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Volumn 2, Issue , 2008, Pages

A quantitative estimation of the global translational activity in logarithmically growing yeast cells

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 57149143976     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-2-87     Document Type: Article
Times cited : (127)

References (44)
  • 2
    • 3943080710 scopus 로고    scopus 로고
    • The molecular mechanics of eukaryotic translation
    • 10.1146/annurev.biochem.73.030403.080419 15189156
    • Kapp LD Lorsch JR The molecular mechanics of eukaryotic translation Annu Rev Biochem 2004, 73:657-704 10.1146/annurev.biochem.73.030403.080419 15189156
    • (2004) Annu Rev Biochem , vol.73 , pp. 657-704
    • Kapp, L.D.1    Lorsch, J.R.2
  • 3
    • 31344452991 scopus 로고    scopus 로고
    • Folding transitions during assembly of the eukaryotic mRNA cap-binding complex
    • 10.1016/j.jmb.2005.12.034 16405910
    • von der Haar T Oku Y Ptushkina M Moerke N Wagner G Gross JD McCarthy JE Folding transitions during assembly of the eukaryotic mRNA cap-binding complex J Mol Biol 2006, 356(4):982-992 10.1016/j.jmb.2005.12.034 16405910
    • (2006) J Mol Biol , vol.356 , Issue.4 , pp. 982-992
    • von der Haar, T.1    Oku, Y.2    Ptushkina, M.3    Moerke, N.4    Wagner, G.5    Gross, J.D.6    McCarthy, J.E.7
  • 4
    • 0347123543 scopus 로고    scopus 로고
    • GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2
    • 10.1016/j.jmb.2003.11.025 14698289
    • Kapp LD Lorsch JR GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2 J Mol Biol 2004, 335(4):923-936 10.1016/j.jmb.2003.11.025 14698289
    • (2004) J Mol Biol , vol.335 , Issue.4 , pp. 923-936
    • Kapp, L.D.1    Lorsch, J.R.2
  • 5
    • 0034714288 scopus 로고    scopus 로고
    • Purification and kinetic analysis of eIF2B from Saccharomyces cerevisiae
    • 10.1074/jbc.M003718200 10852917
    • Nika J Yang W Pavitt GD Hinnebusch AG Hannig EM Purification and kinetic analysis of eIF2B from Saccharomyces cerevisiae J Biol Chem 2000, 275(34):26011-26017 10.1074/jbc.M003718200 10852917
    • (2000) J Biol Chem , vol.275 , Issue.34 , pp. 26011-26017
    • Nika, J.1    Yang, W.2    Pavitt, G.D.3    Hinnebusch, A.G.4    Hannig, E.M.5
  • 7
    • 33947245582 scopus 로고    scopus 로고
    • Coupled release of eukaryotic translation initiation factors 5B and 1A from 80S ribosomes following subunit joining
    • 1820483 17242201 10.1128/MCB.02254-06
    • Fringer JM Acker MG Fekete CA Lorsch JR Dever TE Coupled release of eukaryotic translation initiation factors 5B and 1A from 80S ribosomes following subunit joining Mol Cell Biol 2007, 27(6):2384-2397 1820483 17242201 10.1128/MCB.02254-06
    • (2007) Mol Cell Biol , vol.27 , Issue.6 , pp. 2384-2397
    • Fringer, J.M.1    Acker, M.G.2    Fekete, C.A.3    Lorsch, J.R.4    Dever, T.E.5
  • 8
    • 37249009538 scopus 로고    scopus 로고
    • Kinetics of the interactions between yeast elongation factors 1A and 1Balpha, guanine nucleotides, and aminoacyl-tRNA
    • 10.1074/jbc.M707245200 17925388
    • Gromadski KB Schummer T Stromgaard A Knudsen CR Kinzy TG Rodnina MV Kinetics of the interactions between yeast elongation factors 1A and 1Balpha, guanine nucleotides, and aminoacyl-tRNA J Biol Chem 2007, 282(49):35629-35637 10.1074/jbc.M707245200 17925388
    • (2007) J Biol Chem , vol.282 , Issue.49 , pp. 35629-35637
    • Gromadski, K.B.1    Schummer, T.2    Stromgaard, A.3    Knudsen, C.R.4    Kinzy, T.G.5    Rodnina, M.V.6
  • 9
    • 33845917020 scopus 로고    scopus 로고
    • How ribosomes make peptide bonds
    • 10.1016/j.tibs.2006.11.007 17157507
    • Rodnina MV Beringer M Wintermeyer W How ribosomes make peptide bonds Trends Biochem Sci 2007, 32(1):20-26 10.1016/j.tibs.2006.11.007 17157507
    • (2007) Trends Biochem Sci , vol.32 , Issue.1 , pp. 20-26
    • Rodnina, M.V.1    Beringer, M.2    Wintermeyer, W.3
  • 11
    • 0030832613 scopus 로고    scopus 로고
    • Identification of partners of TIF34, a component of the yeast eIF3 complex, required for cell proliferation and translation initiation
    • 1170285 9362495 10.1093/emboj/16.22.6812
    • Verlhac MH Chen RH Hanachi P Hershey JW Derynck R Identification of partners of TIF34, a component of the yeast eIF3 complex, required for cell proliferation and translation initiation Embo J 1997, 16(22):6812-6822 1170285 9362495 10.1093/emboj/16.22.6812
    • (1997) Embo J , vol.16 , Issue.22 , pp. 6812-6822
    • Verlhac, M.H.1    Chen, R.H.2    Hanachi, P.3    Hershey, J.W.4    Derynck, R.5
  • 12
    • 0036428702 scopus 로고    scopus 로고
    • Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex function
    • 10.1046/j.1365-2958.2002.03172.x 12406227
    • von der Haar T McCarthy JE Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex function Mol Microbiol 2002, 46(2):531-544 10.1046/ j.1365-2958.2002.03172.x 12406227
    • (2002) Mol Microbiol , vol.46 , Issue.2 , pp. 531-544
    • von der Haar, T.1    McCarthy, J.E.2
  • 13
    • 33748377124 scopus 로고    scopus 로고
    • Quantification of protein half-lives in the budding yeast proteome
    • 1550773 16916930 10.1073/pnas.0605420103
    • Belle A Tanay A Bitincka L Shamir R O'Shea EK Quantification of protein half-lives in the budding yeast proteome Proc Natl Acad Sci USA 2006, 103(35):13004-13009 1550773 16916930 10.1073/pnas.0605420103
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.35 , pp. 13004-13009
    • Belle, A.1    Tanay, A.2    Bitincka, L.3    Shamir, R.4    O'Shea, E.K.5
  • 15
    • 33846165487 scopus 로고    scopus 로고
    • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    • 10.1038/nbt1270 17187058
    • Lu P Vogel C Wang R Yao X Marcotte EM Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation Nat Biotechnol 2007, 25(1):117-124 10.1038/ nbt1270 17187058
    • (2007) Nat Biotechnol , vol.25 , Issue.1 , pp. 117-124
    • Lu, P.1    Vogel, C.2    Wang, R.3    Yao, X.4    Marcotte, E.M.5
  • 16
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
    • 10.1038/nature04785 16699522
    • Newman JR Ghaemmaghami S Ihmels J Breslow DK Noble M DeRisi JL Weissman JS Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise Nature 2006, 441(7095):840-846 10.1038/ nature04785 16699522
    • (2006) Nature , vol.441 , Issue.7095 , pp. 840-846
    • Newman, J.R.1    Ghaemmaghami, S.2    Ihmels, J.3    Breslow, D.K.4    Noble, M.5    DeRisi, J.L.6    Weissman, J.S.7
  • 17
    • 10944232800 scopus 로고    scopus 로고
    • Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale
    • 10.1074/mcp.M400099-MCP200 15326222
    • Beyer A Hollunder J Nasheuer HP Wilhelm T Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale Mol Cell Proteomics 2004, 3(11):1083-1092 10.1074/ mcp.M400099-MCP200 15326222
    • (2004) Mol Cell Proteomics , vol.3 , Issue.11 , pp. 1083-1092
    • Beyer, A.1    Hollunder, J.2    Nasheuer, H.P.3    Wilhelm, T.4
  • 18
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • 193646 12952525 10.1186/gb-2003-4-9-117
    • Greenbaum D Colangelo C Williams K Gerstein M Comparing protein abundance and mRNA expression levels on a genomic scale Genome Biol 2003, 4(9):117 193646 12952525 10.1186/gb-2003-4-9-117
    • (2003) Genome Biol , vol.4 , Issue.9 , pp. 117
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 20
    • 0037388094 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
    • 153018 12660367 10.1073/pnas.0635171100
    • Arava Y Wang Y Storey JD Liu CL Brown PO Herschlag D Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae Proc Natl Acad Sci USA 2003, 100(7):3889-3894 153018 12660367 10.1073/ pnas.0635171100
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.7 , pp. 3889-3894
    • Arava, Y.1    Wang, Y.2    Storey, J.D.3    Liu, C.L.4    Brown, P.O.5    Herschlag, D.6
  • 21
    • 0037177855 scopus 로고    scopus 로고
    • Transcript abundance in yeast varies over six orders of magnitude
    • 10.1074/jbc.C200101200 11882647
    • Holland MJ Transcript abundance in yeast varies over six orders of magnitude J Biol Chem 2002, 277(17):14363-14366 10.1074/jbc.C200101200 11882647
    • (2002) J Biol Chem , vol.277 , Issue.17 , pp. 14363-14366
    • Holland, M.J.1
  • 22
    • 0033573938 scopus 로고    scopus 로고
    • Global response of Saccharomyces cerevisiae to an alkylating agent
    • 15489 9990050 10.1073/pnas.96.4.1486
    • Jelinsky SA Samson LD Global response of Saccharomyces cerevisiae to an alkylating agent Proc Natl Acad Sci USA 1999, 96(4):1486-1491 15489 9990050 10.1073/pnas.96.4.1486
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.4 , pp. 1486-1491
    • Jelinsky, S.A.1    Samson, L.D.2
  • 23
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • 10.1038/nbt1098-939 9788350
    • Roth FP Hughes JD Estep PW Church GM Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation Nat Biotechnol 1998, 16(10):939-945 10.1038/nbt1098-939 9788350
    • (1998) Nat Biotechnol , vol.16 , Issue.10 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 24
    • 34548489876 scopus 로고    scopus 로고
    • Balanced production of ribosomal proteins
    • 10.1016/j.gene.2007.07.007 17689889
    • Perry RP Balanced production of ribosomal proteins Gene 2007, 401(1-2):1-3 10.1016/j.gene.2007.07.007 17689889
    • (2007) Gene , vol.401 , Issue.1-2 , pp. 1-3
    • Perry, R.P.1
  • 25
    • 0016434646 scopus 로고
    • Cellular content of ribonucleic acid and protein in Saccharomyces cerevisiae as a function of exponential growth rate: Calculation of the apparent peptide chain elongation rate
    • 245948 1089627
    • Boehlke KW Friesen JD Cellular content of ribonucleic acid and protein in Saccharomyces cerevisiae as a function of exponential growth rate: calculation of the apparent peptide chain elongation rate J Bacteriol 1975, 121(2):429-433 245948 1089627
    • (1975) J Bacteriol , vol.121 , Issue.2 , pp. 429-433
    • Boehlke, K.W.1    Friesen, J.D.2
  • 26
    • 0014556725 scopus 로고
    • On the regulation of ribosomal RNA synthesis in yeast
    • 10.1016/0014-4827(69)90008-1 5824444
    • Schweizer E Halvorson HO On the regulation of ribosomal RNA synthesis in yeast Exp Cell Res 1969, 56(2):239-244 10.1016/0014-4827(69)90008-1 5824444
    • (1969) Exp Cell Res , vol.56 , Issue.2 , pp. 239-244
    • Schweizer, E.1    Halvorson, H.O.2
  • 27
    • 0015526789 scopus 로고
    • Ribosomal RNA synthesis in Saccharomyces cerevisiae
    • 10.1016/0022-2836(72)90279-3 4557192
    • Udem SA Warner JR Ribosomal RNA synthesis in Saccharomyces cerevisiae J Mol Biol 1972, 65(2):227-242 10.1016/0022-2836(72)90279-3 4557192
    • (1972) J Mol Biol , vol.65 , Issue.2 , pp. 227-242
    • Udem, S.A.1    Warner, J.R.2
  • 28
    • 0016393893 scopus 로고
    • The elongation rate of proteins of different molecular weight classes in yeast
    • 10.1016/0014-5793(74)80323-6 4607959
    • Waldron C Jund R Lacroute F The elongation rate of proteins of different molecular weight classes in yeast FEBS Lett 1974, 46(1):11-16 10.1016/ 0014-5793(74)80323-6 4607959
    • (1974) FEBS Lett , vol.46 , Issue.1 , pp. 11-16
    • Waldron, C.1    Jund, R.2    Lacroute, F.3
  • 29
    • 0016730809 scopus 로고
    • Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast
    • 246135 1097403
    • Waldron C Lacroute F Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast J Bacteriol 1975, 122(3):855-865 246135 1097403
    • (1975) J Bacteriol , vol.122 , Issue.3 , pp. 855-865
    • Waldron, C.1    Lacroute, F.2
  • 30
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • 10.1016/S0968-0004(99)01460-7 10542411
    • Warner JR The economics of ribosome biosynthesis in yeast Trends Biochem Sci 1999, 24(11):437-440 10.1016/S0968-0004(99)01460-7 10542411
    • (1999) Trends Biochem Sci , vol.24 , Issue.11 , pp. 437-440
    • Warner, J.R.1
  • 31
    • 42449124168 scopus 로고    scopus 로고
    • Optimized protein extraction for quantitative proteomics of yeasts
    • 2031916 17957260 10.1371/journal.pone.0001078
    • von der Haar T Optimized protein extraction for quantitative proteomics of yeasts PLoS ONE 2007, 2(10):e1078 2031916 17957260 10.1371/ journal.pone.0001078
    • (2007) PLoS ONE , vol.2 , Issue.10
    • von der Haar, T.1
  • 32
    • 0017360718 scopus 로고
    • Number and distribution of polyadenylated RNA sequences in yeast
    • 10.1016/0092-8674(77)90032-0 321129
    • Hereford LM Rosbash M Number and distribution of polyadenylated RNA sequences in yeast Cell 1977, 10(3):453-462 10.1016/0092-8674(77)90032-0 321129
    • (1977) Cell , vol.10 , Issue.3 , pp. 453-462
    • Hereford, L.M.1    Rosbash, M.2
  • 33
    • 0019818270 scopus 로고
    • Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiae
    • 369722 7050661
    • Kief DR Warner JR Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiae Mol Cell Biol 1981, 1(11):1007-1015 369722 7050661
    • (1981) Mol Cell Biol , vol.1 , Issue.11 , pp. 1007-1015
    • Kief, D.R.1    Warner, J.R.2
  • 34
    • 0017745070 scopus 로고
    • Evidence for a high proportion of inactive ribosomes in slow-growing yeast cells
    • 1183787 343781
    • Waldron C Jund R Lacroute F Evidence for a high proportion of inactive ribosomes in slow-growing yeast cells Biochem J 1977, 168(3):409-415 1183787 343781
    • (1977) Biochem J , vol.168 , Issue.3 , pp. 409-415
    • Waldron, C.1    Jund, R.2    Lacroute, F.3
  • 35
    • 34547106335 scopus 로고    scopus 로고
    • Distributed control for recruitment, scanning and subunit joining steps of translation initiation
    • 1920251 17483513 10.1093/nar/gkm283
    • Sangthong P Hughes J McCarthy JE Distributed control for recruitment, scanning and subunit joining steps of translation initiation Nucleic Acids Res 2007, 35(11):3573-3580 1920251 17483513 10.1093/nar/gkm283
    • (2007) Nucleic Acids Res , vol.35 , Issue.11 , pp. 3573-3580
    • Sangthong, P.1    Hughes, J.2    McCarthy, J.E.3
  • 36
    • 34748898487 scopus 로고    scopus 로고
    • Structure and function of the eukaryotic ribosome and elongation factors
    • Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press Mathews MB, Sonenberg N, Hershey JWB
    • Taylor DJ Frank J Kinzy TG Structure and function of the eukaryotic ribosome and elongation factors Translational control in biology and medicine Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press Mathews MB, Sonenberg N, Hershey JWB 2007:59-85
    • (2007) Translational Control in Biology and Medicine , pp. 59-85
    • Taylor, D.J.1    Frank, J.2    Kinzy, T.G.3
  • 37
    • 33846666638 scopus 로고    scopus 로고
    • Regulated translational bypass of stop codons in yeast
    • 10.1016/j.tim.2006.12.002 17187982
    • von der Haar T Tuite MF Regulated translational bypass of stop codons in yeast Trends Microbiol 2007, 15(2):78-86 10.1016/j.tim.2006.12.002 17187982
    • (2007) Trends Microbiol , vol.15 , Issue.2 , pp. 78-86
    • von der Haar, T.1    Tuite, M.F.2
  • 38
    • 33845992204 scopus 로고    scopus 로고
    • Kinetic analysis of interaction of eukaryotic release factor 3 with guanine nucleotides
    • 10.1074/jbc.M607461200 17062564
    • Pisareva VP Pisarev AV Hellen CU Rodnina MV Pestova TV Kinetic analysis of interaction of eukaryotic release factor 3 with guanine nucleotides J Biol Chem 2006, 281(52):40224-40235 10.1074/jbc.M607461200 17062564
    • (2006) J Biol Chem , vol.281 , Issue.52 , pp. 40224-40235
    • Pisareva, V.P.1    Pisarev, A.V.2    Hellen, C.U.3    Rodnina, M.V.4    Pestova, T.V.5
  • 39
    • 28844478867 scopus 로고    scopus 로고
    • eIF2B, a mediator of general and gene-specific translational control
    • 16246152
    • Pavitt GD eIF2B, a mediator of general and gene-specific translational control Biochem Soc Trans 2005, 33(Pt 6):1487-1492 16246152
    • (2005) Biochem Soc Trans , vol.33 , Issue.PART 6 , pp. 1487-1492
    • Pavitt, G.D.1
  • 40
    • 34249699125 scopus 로고    scopus 로고
    • Change in nutritional status modulates the abundance of critical pre-initiation intermediate complexes during translation initiation in vivo
    • 2041914 17512538 10.1016/j.jmb.2007.04.034
    • Singh CR Udagawa T Lee B Wassink S He H Yamamoto Y Anderson JT Pavitt GD Asano K Change in nutritional status modulates the abundance of critical pre-initiation intermediate complexes during translation initiation in vivo J Mol Biol 2007, 370(2):315-330 2041914 17512538 10.1016/ j.jmb.2007.04.034
    • (2007) J Mol Biol , vol.370 , Issue.2 , pp. 315-330
    • Singh, C.R.1    Udagawa, T.2    Lee, B.3    Wassink, S.4    He, H.5    Yamamoto, Y.6    Anderson, J.T.7    Pavitt, G.D.8    Asano, K.9
  • 41
    • 0025084414 scopus 로고
    • Processivity errors of gene expression in Escherichia coli
    • 10.1016/S0022-2836(05)80164-0 2121997
    • Jorgensen F Kurland CG Processivity errors of gene expression in Escherichia coli J Mol Biol 1990, 215(4):511-521 10.1016/ S0022-2836(05)80164-0 2121997
    • (1990) J Mol Biol , vol.215 , Issue.4 , pp. 511-521
    • Jorgensen, F.1    Kurland, C.G.2
  • 42
    • 17844395239 scopus 로고    scopus 로고
    • Dissecting eukaryotic translation and its control by ribosome density mapping
    • 1087779 15860778 10.1093/nar/gki331
    • Arava Y Boas FE Brown PO Herschlag D Dissecting eukaryotic translation and its control by ribosome density mapping Nucleic Acids Res 2005, 33(8):2421-2432 1087779 15860778 10.1093/nar/gki331
    • (2005) Nucleic Acids Res , vol.33 , Issue.8 , pp. 2421-2432
    • Arava, Y.1    Boas, F.E.2    Brown, P.O.3    Herschlag, D.4
  • 43
    • 34548446795 scopus 로고    scopus 로고
    • Halting a cellular production line: Responses to ribosomal pausing during translation
    • 10.1042/BC20070037 17696878
    • Buchan JR Stansfield I Halting a cellular production line: Responses to ribosomal pausing during translation Biol Cell 2007, 99(9):475-487 10.1042/BC20070037 17696878
    • (2007) Biol Cell , vol.99 , Issue.9 , pp. 475-487
    • Buchan, J.R.1    Stansfield, I.2
  • 44
    • 33947211185 scopus 로고    scopus 로고
    • Kinetic analysis of the interaction of guanine nucleotides with eukaryotic translation initiation factor eIF5B
    • 10.1021/bi062134g 17297921
    • Pisareva VP Hellen CU Pestova TV Kinetic analysis of the interaction of guanine nucleotides with eukaryotic translation initiation factor eIF5B Biochemistry 2007, 46(10):2622-2629 10.1021/bi062134g 17297921
    • (2007) Biochemistry , vol.46 , Issue.10 , pp. 2622-2629
    • Pisareva, V.P.1    Hellen, C.U.2    Pestova, T.V.3


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