-
2
-
-
10444280038
-
Structure-function studies on nitric oxide synthases
-
DOI 10.1016/j.jinorgbio.2004.10.016, PII S0162013404003216, Heme-Diatomic Interactions, Part 1
-
Li, H. and Poulos, T. L. (2005) Structure-function studies on nitric oxide synthases J. Inorg. Biochem. 99, 293-305 (Pubitemid 39642983)
-
(2005)
Journal of Inorganic Biochemistry
, vol.99
, Issue.1
, pp. 293-305
-
-
Li, H.1
Poulos, T.L.2
-
3
-
-
68149166459
-
Structural and mechanistic aspects of flavoproteins: Electron transfer through the nitric oxide synthase flavoprotein domain
-
Stuehr, D. J., Tejero, J., and Haque, M. M. (2009) Structural and mechanistic aspects of flavoproteins: Electron transfer through the nitric oxide synthase flavoprotein domain FEBS J. 276, 3959-3974
-
(2009)
FEBS J.
, vol.276
, pp. 3959-3974
-
-
Stuehr, D.J.1
Tejero, J.2
Haque, M.M.3
-
4
-
-
84861857184
-
Structure and regulation of soluble guanylate cyclase
-
Derbyshire, E. R. and Marletta, M. A. (2012) Structure and regulation of soluble guanylate cyclase Annu. Rev. Biochem. 81, 533-559
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 533-559
-
-
Derbyshire, E.R.1
Marletta, M.A.2
-
5
-
-
28044467552
-
Recent advances in the understanding of the role of nitric oxide in cardiovascular homeostasis
-
DOI 10.1016/j.pharmthera.2005.04.005, PII S0163725805000811
-
Schulz, R., Rassaf, T., Massion, P. B., Kelm, M., and Balligand, J. L. (2005) Recent advances in the understanding of the role of nitric oxide in cardiovascular homeostasis Pharmacol. Ther. 108, 225-256 (Pubitemid 41691866)
-
(2005)
Pharmacology and Therapeutics
, vol.108
, Issue.3
, pp. 225-256
-
-
Schulz, R.1
Rassaf, T.2
Massion, P.B.3
Kelm, M.4
Balligand, J.-L.5
-
6
-
-
10444235057
-
Soluble guanylyl cyclase: More secrets revealed
-
DOI 10.1016/j.cellsig.2004.09.008, PII S0898656804001974
-
Pyriochou, A. and Papapetropoulos, A. (2005) Soluble guanylyl cyclase: More secrets revealed Cell. Signalling 17, 407-413 (Pubitemid 39643059)
-
(2005)
Cellular Signalling
, vol.17
, Issue.4
, pp. 407-413
-
-
Pyriochou, A.1
Papapetropoulos, A.2
-
7
-
-
84855353573
-
Heart disease and stroke statistics -2012 update: A report from the American Heart Association
-
Roger, V. L., Go, A. S., Lloyd-Jones, D. M., Benjamin, E. J., Berry, J. D., Borden, W. B., Bravata, D. M., Dai, S., Ford, E. S., Fox, C. S., Fullerton, H. J., Gillespie, C., Hailpern, S. M., Heit, J. A., Howard, V. J., Kissela, B. M., Kittner, S. J., Lackland, D. T., Lichtman, J. H., Lisabeth, L. D., Makuc, D. M., Marcus, G. M., Marelli, A., Matchar, D. B., Moy, C. S., Mozaffarian, D., Mussolino, M. E., Nichol, G., Paynter, N. P., Soliman, E. Z., Sorlie, P. D., Sotoodehnia, N., Turan, T. N., Virani, S. S., Wong, N. D., Woo, D., and Turner, M. B. (2012) Heart disease and stroke statistics-2012 update: A report from the American Heart Association Circulation 125, e2-e220
-
(2012)
Circulation
, vol.125
-
-
Roger, V.L.1
Go, A.S.2
Lloyd-Jones, D.M.3
Benjamin, E.J.4
Berry, J.D.5
Borden, W.B.6
Bravata, D.M.7
Dai, S.8
Ford, E.S.9
Fox, C.S.10
Fullerton, H.J.11
Gillespie, C.12
Hailpern, S.M.13
Heit, J.A.14
Howard, V.J.15
Kissela, B.M.16
Kittner, S.J.17
Lackland, D.T.18
Lichtman, J.H.19
Lisabeth, L.D.20
Makuc, D.M.21
Marcus, G.M.22
Marelli, A.23
Matchar, D.B.24
Moy, C.S.25
Mozaffarian, D.26
Mussolino, M.E.27
Nichol, G.28
Paynter, N.P.29
Soliman, E.Z.30
Sorlie, P.D.31
Sotoodehnia, N.32
Turan, T.N.33
Virani, S.S.34
Wong, N.D.35
Woo, D.36
Turner, M.B.37
more..
-
8
-
-
50449181106
-
Nitro-glycerine as a remedy for angina pectoris
-
Murrell, W. (1879) Nitro-glycerine as a remedy for angina pectoris Lancet 113, 113-115
-
(1879)
Lancet
, vol.113
, pp. 113-115
-
-
Murrell, W.1
-
9
-
-
33748312096
-
NO-independent stimulators and activators of soluble guanylate cyclase: Discovery and therapeutic potential
-
DOI 10.1038/nrd2038, PII NRD2038
-
Evgenov, O. V., Pacher, P., Schmidt, P. M., Hasko, G., Schmidt, H. H., and Stasch, J. P. (2006) NO-independent stimulators and activators of soluble guanylate cyclase: Discovery and therapeutic potential Nat. Rev. Drug Discovery 5, 755-768 (Pubitemid 44323702)
-
(2006)
Nature Reviews Drug Discovery
, vol.5
, Issue.9
, pp. 755-768
-
-
Evgenov, O.V.1
Pacher, P.2
Schmidt, P.M.3
Hasko, G.4
Schmidt, H.H.H.W.5
Stasch, J.-P.6
-
10
-
-
69549120287
-
Riociguat, an oral soluble guanylate cyclase stimulator for the treatment of pulmonary hypertension
-
Belik, J. (2009) Riociguat, an oral soluble guanylate cyclase stimulator for the treatment of pulmonary hypertension Curr. Opin. Invest. Drugs 10, 971-979
-
(2009)
Curr. Opin. Invest. Drugs
, vol.10
, pp. 971-979
-
-
Belik, J.1
-
11
-
-
67651094166
-
Discovery of riociguat (BAY 63-2521): A potent, oral stimulator of soluble guanylate cyclase for the treatment of pulmonary hypertension
-
Mittendorf, J., Weigand, S., Alonso-Alija, C., Bischoff, E., Feurer, A., Gerisch, M., Kern, A., Knorr, A., Lang, D., Muenter, K., Radtke, M., Schirok, H., Schlemmer, K. H., Stahl, E., Straub, A., Wunder, F., and Stasch, J. P. (2009) Discovery of riociguat (BAY 63-2521): A potent, oral stimulator of soluble guanylate cyclase for the treatment of pulmonary hypertension ChemMedChem 4, 853-865
-
(2009)
ChemMedChem
, vol.4
, pp. 853-865
-
-
Mittendorf, J.1
Weigand, S.2
Alonso-Alija, C.3
Bischoff, E.4
Feurer, A.5
Gerisch, M.6
Kern, A.7
Knorr, A.8
Lang, D.9
Muenter, K.10
Radtke, M.11
Schirok, H.12
Schlemmer, K.H.13
Stahl, E.14
Straub, A.15
Wunder, F.16
Stasch, J.P.17
-
12
-
-
77954568592
-
Structure of cinaciguat (BAY 58-2667) bound to Nostoc H-NOX domain reveals insights into heme-mimetic activation of the soluble guanylyl cyclase
-
Martin, F., Baskaran, P., Ma, X., Dunten, P. W., Schaefer, M., Stasch, J. P., Beuve, A., and van den Akker, F. (2010) Structure of cinaciguat (BAY 58-2667) bound to Nostoc H-NOX domain reveals insights into heme-mimetic activation of the soluble guanylyl cyclase J. Biol. Chem. 285, 22651-22657
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 22651-22657
-
-
Martin, F.1
Baskaran, P.2
Ma, X.3
Dunten, P.W.4
Schaefer, M.5
Stasch, J.P.6
Beuve, A.7
Van Den Akker, F.8
-
13
-
-
67949105076
-
Nitric oxide-independent vasodilator rescues heme-oxidized soluble guanylate cyclase from proteasomal degradation
-
Meurer, S., Pioch, S., Pabst, T., Opitz, N., Schmidt, P. M., Beckhaus, T., Wagner, K., Matt, S., Gegenbauer, K., Geschka, S., Karas, M., Stasch, J. P., Schmidt, H. H., and Muller-Esterl, W. (2009) Nitric oxide-independent vasodilator rescues heme-oxidized soluble guanylate cyclase from proteasomal degradation Circ. Res. 105, 33-41
-
(2009)
Circ. Res.
, vol.105
, pp. 33-41
-
-
Meurer, S.1
Pioch, S.2
Pabst, T.3
Opitz, N.4
Schmidt, P.M.5
Beckhaus, T.6
Wagner, K.7
Matt, S.8
Gegenbauer, K.9
Geschka, S.10
Karas, M.11
Stasch, J.P.12
Schmidt, H.H.13
Muller-Esterl, W.14
-
14
-
-
67651174445
-
More than a retrograde messenger: Nitric oxide needs two cGMP pathways to induce hippocampal long-term potentiation
-
Taqatqeh, F., Mergia, E., Neitz, A., Eysel, U. T., Koesling, D., and Mittmann, T. (2009) More than a retrograde messenger: Nitric oxide needs two cGMP pathways to induce hippocampal long-term potentiation J. Neurosci. 29, 9344-9350
-
(2009)
J. Neurosci.
, vol.29
, pp. 9344-9350
-
-
Taqatqeh, F.1
Mergia, E.2
Neitz, A.3
Eysel, U.T.4
Koesling, D.5
Mittmann, T.6
-
15
-
-
33645959194
-
Nitric oxide signaling: No longer simply on or off
-
Cary, S. P., Winger, J. A., Derbyshire, E. R., and Marletta, M. A. (2006) Nitric oxide signaling: No longer simply on or off Trends Biochem. Sci. 31, 231-239
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 231-239
-
-
Cary, S.P.1
Winger, J.A.2
Derbyshire, E.R.3
Marletta, M.A.4
-
16
-
-
70349777587
-
Structure and signaling mechanism of Per-ARNT-Sim domains
-
Moglich, A., Ayers, R. A., and Moffat, K. (2009) Structure and signaling mechanism of Per-ARNT-Sim domains Structure 17, 1282-1294
-
(2009)
Structure
, vol.17
, pp. 1282-1294
-
-
Moglich, A.1
Ayers, R.A.2
Moffat, K.3
-
17
-
-
0030476908
-
Sensitizing soluble guanylyl cyclase to become a highly CO-sensitive enzyme
-
Friebe, A., Schultz, G., and Koesling, D. (1996) Sensitizing soluble guanylyl cyclase to become a highly CO-sensitive enzyme EMBO J. 15, 6863-6868 (Pubitemid 27023257)
-
(1996)
EMBO Journal
, vol.15
, Issue.24
, pp. 6863-6868
-
-
Friebe, A.1
Schultz, G.2
Koesling, D.3
-
18
-
-
0032078245
-
Synergistic activation of soluble guanylate cyclase by CY-1 and carbon monoxide: Implications for the role of cleavage of the iron-histidine bond during activation by nitric oxide
-
Stone, J. R. and Marletta, M. A. (1998) Synergistic activation of soluble guanylate cyclase by YC-1 and carbon monoxide: Implications for the role of cleavage of the iron-histidine bond during activation by nitric oxide Chem. Biol. 5, 255-261 (Pubitemid 28259740)
-
(1998)
Chemistry and Biology
, vol.5
, Issue.5
, pp. 255-261
-
-
Stone, J.R.1
Marletta, M.A.2
-
19
-
-
4444333687
-
Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases
-
DOI 10.1073/pnas.0405188101
-
Pellicena, P., Karow, D. S., Boon, E. M., Marletta, M. A., and Kuriyan, J. (2004) Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases Proc. Natl. Acad. Sci. U.S.A. 101, 12854-12859 (Pubitemid 39167547)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.35
, pp. 12854-12859
-
-
Pellicena, P.1
Karow, D.S.2
Boon, E.M.3
Marletta, M.A.4
Kuriyan, J.5
-
20
-
-
9444240366
-
Femtomolar sensitivity of a NO sensor from Clostridium botulinum
-
DOI 10.1126/science.1103596
-
Nioche, P., Berka, V., Vipond, J., Minton, N., Tsai, A. L., and Raman, C. S. (2004) Femtomolar sensitivity of a NO sensor from Clostridium botulinum Science 306, 1550-1553 (Pubitemid 39564949)
-
(2004)
Science
, vol.306
, Issue.5701
, pp. 1550-1553
-
-
Nioche, P.1
Berka, V.2
Vipond, J.3
Minton, N.4
Tsai, A.-L.5
Raman, C.S.6
-
21
-
-
33846491964
-
NO and CO differentially activate soluble guanylyl cyclase via a heme pivot-bend mechanism
-
DOI 10.1038/sj.emboj.7601521, PII 7601521
-
Ma, X., Sayed, N., Beuve, A., and van den Akker, F. (2007) NO and CO differentially activate soluble guanylyl cyclase via a heme pivot-bend mechanism EMBO J. 26, 578-588 (Pubitemid 46160957)
-
(2007)
EMBO Journal
, vol.26
, Issue.2
, pp. 578-588
-
-
Ma, X.1
Sayed, N.2
Beuve, A.3
Van Den Akker, F.4
-
22
-
-
38149078912
-
PAS-mediated Dimerization of Soluble Guanylyl Cyclase Revealed by Signal Transduction Histidine Kinase Domain Crystal Structure
-
Ma, X., Sayed, N., Baskaran, P., Beuve, A., and van den Akker, F. (2008) PAS-mediated Dimerization of Soluble Guanylyl Cyclase Revealed by Signal Transduction Histidine Kinase Domain Crystal Structure J. Biol. Chem. 283, 1167-1178
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 1167-1178
-
-
Ma, X.1
Sayed, N.2
Baskaran, P.3
Beuve, A.4
Van Den Akker, F.5
-
23
-
-
77649085537
-
Crystal structure of the signaling helix coiled-coil domain of the β1 subunit of the soluble guanylyl cyclase
-
Ma, X., Beuve, A., and van den Akker, F. (2010) Crystal structure of the signaling helix coiled-coil domain of the β1 subunit of the soluble guanylyl cyclase BMC Struct. Biol. 10, 2
-
(2010)
BMC Struct. Biol.
, vol.10
, pp. 2
-
-
Ma, X.1
Beuve, A.2
Van Den Akker, F.3
-
24
-
-
51049110540
-
Allostery in recombinant soluble guanylyl cyclase from Manduca sexta
-
Hu, X., Murata, L. B., Weichsel, A., Brailey, J. L., Roberts, S. A., Nighorn, A., and Montfort, W. R. (2008) Allostery in recombinant soluble guanylyl cyclase from Manduca sexta J. Biol. Chem. 283, 20968-20977
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20968-20977
-
-
Hu, X.1
Murata, L.B.2
Weichsel, A.3
Brailey, J.L.4
Roberts, S.A.5
Nighorn, A.6
Montfort, W.R.7
-
25
-
-
56749185763
-
Binding of YC-1 or BAY 41-2272 to Soluble Guanylyl Cyclase Induces a Geminate Phase in CO Photolysis
-
Hu, X., Feng, C., Hazzard, J. T., Tollin, G., and Montfort, W. R. (2008) Binding of YC-1 or BAY 41-2272 to Soluble Guanylyl Cyclase Induces a Geminate Phase in CO Photolysis J. Am. Chem. Soc. 130, 15748-15749
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 15748-15749
-
-
Hu, X.1
Feng, C.2
Hazzard, J.T.3
Tollin, G.4
Montfort, W.R.5
-
26
-
-
79959800268
-
Oxidation and loss of heme in soluble guanylyl cyclase from Manduca sexta
-
Fritz, B. G., Hu, X., Brailey, J. L., Berry, R. E., Walker, F. A., and Montfort, W. R. (2011) Oxidation and loss of heme in soluble guanylyl cyclase from Manduca sexta Biochemistry 50, 5813-5815
-
(2011)
Biochemistry
, vol.50
, pp. 5813-5815
-
-
Fritz, B.G.1
Hu, X.2
Brailey, J.L.3
Berry, R.E.4
Walker, F.A.5
Montfort, W.R.6
-
27
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling Biophys. J. 78, 1606-1619 (Pubitemid 30141584)
-
(2000)
Biophysical Journal
, vol.78
, Issue.3
, pp. 1606-1619
-
-
Schuck, P.1
-
28
-
-
0036707991
-
Modern analytical ultracentrifugation in protein science: A tutorial review
-
DOI 10.1110/ps.0207702
-
Lebowitz, J., Lewis, M. S., and Schuck, P. (2002) Modern analytical ultracentrifugation in protein science: A tutorial review Protein Sci. 11, 2067-2079 (Pubitemid 34919611)
-
(2002)
Protein Science
, vol.11
, Issue.9
, pp. 2067-2079
-
-
Lebowitz, J.1
Lewis, M.S.2
Schuck, P.3
-
29
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels Anal. Chem. 68, 850-858
-
(1996)
Anal. Chem.
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
30
-
-
84867315928
-
SQID-XLink: Implementation of an intensity-incorporated algorithm for cross-linked peptide identification
-
Li, W., O'Neill, H. A., and Wysocki, V. H. (2012) SQID-XLink: Implementation of an intensity-incorporated algorithm for cross-linked peptide identification Bioinformatics 28, 2548-2550
-
(2012)
Bioinformatics
, vol.28
, pp. 2548-2550
-
-
Li, W.1
O'Neill, H.A.2
Wysocki, V.H.3
-
31
-
-
58149287749
-
In-depth analysis of tandem mass spectrometry data from disparate instrument types
-
Chalkley, R. J., Baker, P. R., Medzihradszky, K. F., Lynn, A. J., and Burlingame, A. L. (2008) In-depth analysis of tandem mass spectrometry data from disparate instrument types Mol. Cell. Proteomics 7, 2386-2398
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 2386-2398
-
-
Chalkley, R.J.1
Baker, P.R.2
Medzihradszky, K.F.3
Lynn, A.J.4
Burlingame, A.L.5
-
32
-
-
34248369857
-
Biological small-angle X-ray scattering facility at the Stanford Synchrotron Radiation Laboratory
-
Smolsky, I. L., Liu, P., Niebuhr, M., Ito, K., Weiss, T. M., and Tsuruta, H. (2007) Biological small-angle X-ray scattering facility at the Stanford Synchrotron Radiation Laboratory J. Appl. Crystallogr. 40, S453-S458
-
(2007)
J. Appl. Crystallogr.
, vol.40
-
-
Smolsky, I.L.1
Liu, P.2
Niebuhr, M.3
Ito, K.4
Weiss, T.M.5
Tsuruta, H.6
-
33
-
-
0034484513
-
SAXS experiments on absolute scale with Kratky systems using water as a secondary standard
-
DOI 10.1107/S0021889899015216
-
Orthaber, D., Bergmann, A., and Glatter, O. (2000) SAXS experiments on absolute scale with Kratky systems using water as a secondary standard J. Appl. Crystallogr. 33, 218-225 (Pubitemid 32142126)
-
(2000)
Journal of Applied Crystallography
, vol.33
, Issue.2
, pp. 218-225
-
-
Orthaber, D.1
Bergmann, A.2
Glatter, O.3
-
34
-
-
0141484613
-
PRIMUS: A Windows PC-based system for small-angle scattering data analysis
-
Svergun, D. I., Konarev, P. V., Volkov, V. V., Sokolova, A. V., and Koch, M. H. J. (2003) PRIMUS: A Windows PC-based system for small-angle scattering data analysis J. Appl. Crystallogr. 36, 1277-1282
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Svergun, D.I.1
Konarev, P.V.2
Volkov, V.V.3
Sokolova, A.V.4
Koch, M.H.J.5
-
35
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
DOI 10.1107/S0021889892001663
-
Svergun, D. I. (1992) Determination of the Regularization Parameter in Indirect-Transform Methods Using Perceptual Criteria J. Appl. Crystallogr. 25, 495-503 (Pubitemid 23564996)
-
(1992)
Journal of Applied Crystallography
, vol.25
, Issue.PART 4
, pp. 495-503
-
-
Svergun, D.I.1
-
36
-
-
34248359067
-
ATSAS 2.1: Towards automated and web-supported small-angle scattering data analysis
-
Petoukhov, M. V., Konarev, P. V., Kikhney, A. G., and Svergun, D. I. (2007) ATSAS 2.1: Towards automated and web-supported small-angle scattering data analysis J. Appl. Crystallogr. 40, S223-S228
-
(2007)
J. Appl. Crystallogr.
, vol.40
-
-
Petoukhov, M.V.1
Konarev, P.V.2
Kikhney, A.G.3
Svergun, D.I.4
-
37
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun, D. I. (1999) Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing Biophys. J. 76, 2879-2886 (Pubitemid 29269438)
-
(1999)
Biophysical Journal
, vol.76
, Issue.6
, pp. 2879-2886
-
-
Svergun, D.I.1
-
38
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
Volkov, V. V. and Svergun, D. I. (2003) Uniqueness of ab initio shape determination in small-angle scattering J. Appl. Crystallogr. 36, 860-864
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
39
-
-
33744816438
-
UltraScan: A Comprehensive Data Analysis Software Package for Analytical Ultracentrifugation Experiments
-
(Scott, D. J. Harding, S. E. and Rowe, A. J. Eds.) The Royal Society of Chemistry, Cambridge, U.K
-
Demeler, B. (2005) UltraScan: A Comprehensive Data Analysis Software Package for Analytical Ultracentrifugation Experiments. In Analytical Ultracentrifugation: Techniques and Methods (Scott, D. J., Harding, S. E., and Rowe, A. J., Eds.) pp 210-229, The Royal Society of Chemistry, Cambridge, U.K.
-
(2005)
Analytical Ultracentrifugation: Techniques and Methods
, pp. 210-229
-
-
Demeler, B.1
-
40
-
-
0029185933
-
CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
DOI 10.1107/S0021889895007047
-
Svergun, D., Barberato, C., and Koch, M. H. J. (1995) CRYSOL: A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates J. Appl. Crystallogr. 28, 768-773 (Pubitemid 3014671)
-
(1995)
Journal of Applied Crystallography
, vol.28
, Issue.6
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.3
-
41
-
-
4444221565
-
UCSF Chimera: A visualization system for exploratory research and analysis
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera: A visualization system for exploratory research and analysis J. Comput. Chem. 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
42
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
DOI 10.1093/bioinformatics/btg124
-
Ginalski, K., Elofsson, A., Fischer, D., and Rychlewski, L. (2003) 3D-Jury: A simple approach to improve protein structure predictions Bioinformatics 19, 1015-1018 (Pubitemid 36675823)
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
43
-
-
3242887695
-
Protein structure prediction and analysis using the Robetta server
-
Kim, D. E., Chivian, D., and Baker, D. (2004) Protein structure prediction and analysis using the Robetta server Nucleic Acids Res. 32, W526-W531
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kim, D.E.1
Chivian, D.2
Baker, D.3
-
44
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
DOI 10.1002/prot.10389
-
Chen, R., Li, L., and Weng, Z. (2003) ZDOCK: An initial-stage protein-docking algorithm Proteins 52, 80-87 (Pubitemid 36648854)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.52
, Issue.1
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
45
-
-
77954276842
-
SMOG@ctbp: Simplified deployment of structure-based models in GROMACS
-
Noel, J. K., Whitford, P. C., Sanbonmatsu, K. Y., and Onuchic, J. N. (2010) SMOG@ctbp: Simplified deployment of structure-based models in GROMACS Nucleic Acids Res. 38, W657-W661
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Noel, J.K.1
Whitford, P.C.2
Sanbonmatsu, K.Y.3
Onuchic, J.N.4
-
46
-
-
63449135082
-
An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields
-
Whitford, P. C., Noel, J. K., Gosavi, S., Schug, A., Sanbonmatsu, K. Y., and Onuchic, J. N. (2009) An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields Proteins 75, 430-441
-
(2009)
Proteins
, vol.75
, pp. 430-441
-
-
Whitford, P.C.1
Noel, J.K.2
Gosavi, S.3
Schug, A.4
Sanbonmatsu, K.Y.5
Onuchic, J.N.6
-
47
-
-
72449186057
-
Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps
-
Grubisic, I., Shokhirev, M. N., Orzechowski, M., Miyashita, O., and Tama, F. (2010) Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps J. Struct. Biol. 169, 95-105
-
(2010)
J. Struct. Biol.
, vol.169
, pp. 95-105
-
-
Grubisic, I.1
Shokhirev, M.N.2
Orzechowski, M.3
Miyashita, O.4
Tama, F.5
-
48
-
-
84857034165
-
Consensus among flexible fitting approaches improves the interpretation of cryo-EM data
-
Ahmed, A., Whitford, P. C., Sanbonmatsu, K. Y., and Tama, F. (2012) Consensus among flexible fitting approaches improves the interpretation of cryo-EM data J. Struct. Biol. 177, 561-570
-
(2012)
J. Struct. Biol.
, vol.177
, pp. 561-570
-
-
Ahmed, A.1
Whitford, P.C.2
Sanbonmatsu, K.Y.3
Tama, F.4
-
49
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
DOI 10.1002/jcc.20291
-
Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A. E., and Berendsen, H. J. (2005) GROMACS: Fast, flexible, and free J. Comput. Chem. 26, 1701-1718 (Pubitemid 43076182)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
50
-
-
34248513078
-
ZRANK: Reranking protein docking predictions with an optimized energy function
-
DOI 10.1002/prot.21373
-
Pierce, B. and Weng, Z. (2007) ZRANK: Reranking protein docking predictions with an optimized energy function Proteins 67, 1078-1086 (Pubitemid 46753952)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.67
, Issue.4
, pp. 1078-1086
-
-
Pierce, B.1
Weng, Z.2
-
51
-
-
0003965863
-
-
Ed., 70th ed. CRC Press, Inc. Boca Raton, FL.
-
Weast, R. C., Ed. (1989) CRC Handbook of Chemistry and Physics, 70th ed., CRC Press, Inc., Boca Raton, FL.
-
(1989)
CRC Handbook of Chemistry and Physics
-
-
Weast, R.C.1
-
52
-
-
33745742438
-
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
-
DOI 10.1002/mas.20082
-
Sinz, A. (2006) Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions Mass Spectrom. Rev. 25, 663-682 (Pubitemid 44014105)
-
(2006)
Mass Spectrometry Reviews
, vol.25
, Issue.4
, pp. 663-682
-
-
Sinz, A.1
-
53
-
-
77956190770
-
Structural characterization of proteins and complexes using small-angle X-ray solution scattering
-
Mertens, H. D. and Svergun, D. I. (2010) Structural characterization of proteins and complexes using small-angle X-ray solution scattering J. Struct. Biol. 172, 128-141
-
(2010)
J. Struct. Biol.
, vol.172
, pp. 128-141
-
-
Mertens, H.D.1
Svergun, D.I.2
-
54
-
-
77749311718
-
Bridging the solution divide: Comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering
-
Rambo, R. P. and Tainer, J. A. (2010) Bridging the solution divide: Comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering Curr. Opin. Struct. Biol. 20, 128-137
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 128-137
-
-
Rambo, R.P.1
Tainer, J.A.2
-
55
-
-
79958045453
-
Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law
-
Rambo, R. P. and Tainer, J. A. (2011) Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law Biopolymers 95, 559-571
-
(2011)
Biopolymers
, vol.95
, pp. 559-571
-
-
Rambo, R.P.1
Tainer, J.A.2
-
56
-
-
43749107283
-
Comparative protein structure modeling using Modeller
-
Chapter 5, Unit 5.6, Wiley, New York.
-
Eswar, N., Webb, B., Marti-Renom, M. A., Madhusudhan, M. S., Eramian, D., Shen, M. Y., Pieper, U., and Sali, A. (2006) Comparative protein structure modeling using Modeller. Current Protocols in Bioinformatics, Chapter 5, Unit 5.6, Wiley, New York.
-
(2006)
Current Protocols in Bioinformatics
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
Shen, M.Y.6
Pieper, U.7
Sali, A.8
-
57
-
-
0032407722
-
YC-1 potentiates nitric oxide- and carbon monoxide-induced cyclic GMP effects in human platelets
-
Friebe, A., Mullershausen, F., Smolenski, A., Walter, U., Schultz, G., and Koesling, D. (1998) YC-1 potentiates nitric oxide-and carbon monoxide-induced cyclic GMP effects in human platelets Mol. Pharmacol. 54, 962-967 (Pubitemid 29002038)
-
(1998)
Molecular Pharmacology
, vol.54
, Issue.6
, pp. 962-967
-
-
Friebe, A.1
Mullershausen, F.2
Smolenski, A.3
Walter, U.4
Schultz, G.5
Koesling, D.6
-
58
-
-
80052479984
-
Thrombospondin-1 and angiotensin II inhibit soluble guanylyl cyclase through an increase in intracellular calcium concentration
-
Ramanathan, S., Mazzalupo, S., Boitano, S., and Montfort, W. R. (2011) Thrombospondin-1 and angiotensin II inhibit soluble guanylyl cyclase through an increase in intracellular calcium concentration Biochemistry 50, 7787-7799
-
(2011)
Biochemistry
, vol.50
, pp. 7787-7799
-
-
Ramanathan, S.1
Mazzalupo, S.2
Boitano, S.3
Montfort, W.R.4
-
59
-
-
53449094062
-
Protein kinase G phosphorylates soluble guanylyl cyclase on serine 64 and inhibits its activity
-
Zhou, Z., Sayed, N., Pyriochou, A., Roussos, C., Fulton, D., Beuve, A., and Papapetropoulos, A. (2008) Protein kinase G phosphorylates soluble guanylyl cyclase on serine 64 and inhibits its activity Arterioscler., Thromb., Vasc. Biol. 28, 1803-1810
-
(2008)
Arterioscler., Thromb., Vasc. Biol.
, vol.28
, pp. 1803-1810
-
-
Zhou, Z.1
Sayed, N.2
Pyriochou, A.3
Roussos, C.4
Fulton, D.5
Beuve, A.6
Papapetropoulos, A.7
-
60
-
-
25844439569
-
Reactive oxygen species induce tyrosine phosphorylation of and Src kinase recruitment to NO-sensitive guanylyl cyclase
-
DOI 10.1074/jbc.M507565200
-
Meurer, S., Pioch, S., Gross, S., and Muller-Esterl, W. (2005) Reactive oxygen species induce tyrosine phosphorylation of and Src kinase recruitment to NO-sensitive guanylyl cyclase J. Biol. Chem. 280, 33149-33156 (Pubitemid 41397111)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.39
, pp. 33149-33156
-
-
Meurer, S.1
Pioch, S.2
Gross, S.3
Muller-Esterl, W.4
-
61
-
-
0031561372
-
Dissociation of nitric oxide from soluble guanylate cyclase
-
DOI 10.1006/bbrc.1997.7470
-
Kharitonov, V. G., Russwurm, M., Magde, D., Sharma, V. S., and Koesling, D. (1997) Dissociation of nitric oxide from soluble guanylate cyclase Biochem. Biophys. Res. Commun. 239, 284-286 (Pubitemid 27480357)
-
(1997)
Biochemical and Biophysical Research Communications
, vol.239
, Issue.1
, pp. 284-286
-
-
Kharitonov, V.G.1
Russwurm, M.2
Magde, D.3
Sharma, V.S.4
Koesling, D.5
-
62
-
-
10044276844
-
NO activation of guanylyl cyclase
-
DOI 10.1038/sj.emboj.7600422
-
Russwurm, M. and Koesling, D. (2004) NO activation of guanylyl cyclase EMBO J. 23, 4443-4450 (Pubitemid 39601969)
-
(2004)
EMBO Journal
, vol.23
, Issue.22
, pp. 4443-4450
-
-
Russwurm, M.1
Koesling, D.2
-
63
-
-
33847720350
-
Dissociation of nitric oxide from soluble guanylate cyclase and heme-nitric oxide/oxygen binding domain constructs
-
DOI 10.1074/jbc.M606327200
-
Winger, J. A., Derbyshire, E. R., and Marletta, M. A. (2007) Dissociation of nitric oxide from soluble guanylate cyclase and heme-nitric oxide/oxygen binding domain constructs J. Biol. Chem. 282, 897-907 (Pubitemid 47076536)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.2
, pp. 897-907
-
-
Winger, J.A.1
Derbyshire, E.R.2
Marletta, M.A.3
-
64
-
-
79955638852
-
The boundary structure in the analysis of reversibly interacting systems by sedimentation velocity
-
Zhao, H., Balbo, A., Brown, P. H., and Schuck, P. (2011) The boundary structure in the analysis of reversibly interacting systems by sedimentation velocity Methods 54, 16-30
-
(2011)
Methods
, vol.54
, pp. 16-30
-
-
Zhao, H.1
Balbo, A.2
Brown, P.H.3
Schuck, P.4
-
65
-
-
0037809223
-
1 subunit of soluble guanylyl cyclase is necessary for activation of the enzyme by nitric oxide and YC-1 but is not involved in heme binding
-
DOI 10.1074/jbc.M212740200
-
Koglin, M. and Behrends, S. (2003) A functional domain of the α1 subunit of soluble guanylyl cyclase is necessary for activation of the enzyme by nitric oxide and YC-1 but is not involved in heme binding J. Biol. Chem. 278, 12590-12597 (Pubitemid 36800249)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.14
, pp. 12590-12597
-
-
Koglin, M.1
Behrends, S.2
-
66
-
-
14844344676
-
Expression and characterization of the catalytic domains of soluble guanylate cyclase: Interaction with the heme domain
-
DOI 10.1021/bi047601d
-
Winger, J. A. and Marletta, M. A. (2005) Expression and characterization of the catalytic domains of soluble guanylate cyclase: Interaction with the heme domain Biochemistry 44, 4083-4090 (Pubitemid 40358061)
-
(2005)
Biochemistry
, vol.44
, Issue.10
, pp. 4083-4090
-
-
Winger, J.A.1
Marletta, M.A.2
-
67
-
-
77955402749
-
Fluorescent fusion proteins of soluble guanylyl cyclase indicate proximity of the heme nitric oxide domain and catalytic domain
-
Haase, T., Haase, N., Kraehling, J. R., and Behrends, S. (2010) Fluorescent fusion proteins of soluble guanylyl cyclase indicate proximity of the heme nitric oxide domain and catalytic domain PLoS One 5, e11617
-
(2010)
PLoS One
, vol.5
, pp. 11617
-
-
Haase, T.1
Haase, N.2
Kraehling, J.R.3
Behrends, S.4
-
68
-
-
0033592910
-
A molecular basis for nitric oxide sensing by soluble guanylate cyclase
-
DOI 10.1073/pnas.96.26.14753
-
Zhao, Y., Brandish, P. E., Ballou, D. P., and Marletta, M. A. (1999) A molecular basis for nitric oxide sensing by soluble guanylate cyclase Proc. Natl. Acad. Sci. U.S.A. 96, 14753-14758 (Pubitemid 30019712)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.26
, pp. 14753-14758
-
-
Zhao, Y.1
Brandish, P.E.2
Ballou, D.P.3
Marletta, M.A.4
-
69
-
-
84859404668
-
Mechanism of binding of NO to soluble guanylyl cyclase: Implication for the second NO binding to the heme proximal site
-
Martin, E., Berka, V., Sharina, I., and Tsai, A. L. (2012) Mechanism of binding of NO to soluble guanylyl cyclase: Implication for the second NO binding to the heme proximal site Biochemistry 51, 2737-2746
-
(2012)
Biochemistry
, vol.51
, pp. 2737-2746
-
-
Martin, E.1
Berka, V.2
Sharina, I.3
Tsai, A.L.4
-
70
-
-
0036774056
-
Structure and interactions of PAS Kinase N-terminal PAS domain: Model for intramolecular kinase regulation
-
DOI 10.1016/S0969-2126(02)00857-2, PII S0969212602008572
-
Amezcua, C. A., Harper, S. M., Rutter, J., and Gardner, K. H. (2002) Structure and interactions of PAS kinase N-terminal PAS domain: Model for intramolecular kinase regulation Structure 10, 1349-1361 (Pubitemid 35232384)
-
(2002)
Structure
, vol.10
, Issue.10
, pp. 1349-1361
-
-
Amezcua, C.A.1
Harper, S.M.2
Rutter, J.3
Gardner, K.H.4
-
71
-
-
84871576386
-
Picosecond to Second Dynamics Reveals a Structural Transition in Clostridium botulinum NO-Sensor Triggered by the Activator BAY-41-2272
-
Yoo, B. K., Lamarre, I., Rappaport, F., Nioche, P., Raman, C. S., Martin, J. L., and Negrerie, M. (2012) Picosecond to Second Dynamics Reveals a Structural Transition in Clostridium botulinum NO-Sensor Triggered by the Activator BAY-41-2272 ACS Chem. Biol. 7, 2046-2054
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 2046-2054
-
-
Yoo, B.K.1
Lamarre, I.2
Rappaport, F.3
Nioche, P.4
Raman, C.S.5
Martin, J.L.6
Negrerie, M.7
|