Peroxidase activity stabilization of cytochrome P450BM3 by rational analysis of intramolecular electron transfer

Journal of Inorganic Biochemistry

Volumn 122, Issue , 2013, Pages 18-26

  Vidal Limón, Abraham ^a   Águila, Sergio ^b   Ayala, Marcela ^a   Batista, Cesar V ^a   Vazquez Duhalt, Rafael ^a,b  

^a INSTITUTO DE BIOTECNOLOGÍA   (Mexico)

^b UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

Electron transfer; Keywords; Molecular mechanics; P450; Peroxidase; QM MM; Stabilization

Indexed keywords

AMINO ACID; CYTOCHROME P450 BM3; ENZYME VARIANT; HEME; HYDROGEN PEROXIDE; MUTANT PROTEIN; PEROXIDASE;

ARTICLE; BACILLUS MEGATERIUM; CONTROLLED STUDY; DENSITY FUNCTIONAL THEORY; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME INACTIVATION; ENZYME KINETICS; ENZYME STABILITY; HYDROXYLATION; MASS SPECTROMETRY; MOLECULAR MECHANICS; MOLECULAR MODEL; NONHUMAN; OXIDATION; PEPTIDE MAPPING; PROTEIN DOMAIN; QUANTUM MECHANICS; SITE DIRECTED MUTAGENESIS; STATIC ELECTRICITY;

BACILLUS MEGATERIUM; CYTOCHROME P-450 ENZYME SYSTEM; DRUG STABILITY; ELECTRONS; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR STRUCTURE; MUTATION; PEROXIDASE; QUANTUM THEORY;

BACILLUS MEGATERIUM;

EID: 84874006826     PISSN: 01620134     EISSN: 18733344     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2013.01.009     Document Type: Article

References (70)

1. P.C. Cirino, and F.H. Arnold Angew. Chem. Int. Ed. 42 2003 3299 3301
2. D.C. Haines, D.R. Tomchick, M. Machius, and J.A. Peterson Biochemistry 40 2001 13456 13465
3. I.G. Denisov, T.M. Makris, S.G. Sligar, and I. Schlichting Chem. Rev. 105 2005 2253 2278
4. E.G. Hrycay, and S.M. Bandiera Arch. Biochem. Biophys. 522 2010 71 89
5. K. Jensen, P.E. Jensen, and B.L. Müller ACS Chem. Biol. 6 2011 533 539
6. A. Luthra, I.G. Denisov, and S.G. Sligar Arch. Biochem. Biophys. 507 2011 26 35
7. C.J.C. Whitehouse, S.G. Bell, and L.-L. Wong Chem. Soc. Rev. 41 2012 1218 1260
8. I. Schlichting, J. Berendzen, K. Chu, A.M. Stock, S.A. Maves, D.E. Benson, R.M. Sweet, D. Ringe, G.A. Petsko, and S.G. Sligar Science 287 2000 1615 1622
9. P.C. Cirino, and F.H. Arnold Adv. Synth. Catal. 344 2002 932 937
10. G.M. Raner, J.I. Thompson, A. Haddy, V. Tangham, N. Bynum, G. Ramachandra Reddy, D.P. Ballou, and J.H. Dawson J. Inorg. Biochem. 100 2006 2045 2053
11. R. Rutter, L.P. Hager, H. Dhonau, M. Hendrich, M. Valentine, and P. Debrunner Biochemistry 23 1984 6809 6816
12. K.M. Manoj, and L.P. Hager Biochemistry 47 2008 2997 3003
13. M. Pecyna, R. Ullrich, B. Bittner, A. Clemens, K. Scheibner, R. Schubert, and M. Hofrichter Appl. Microbiol. Biotechnol. 84 2009 885 897
14. I. Matsunaga, N. Yokotani, O. Gotoh, E. Kusunose, M. Yamada, and K. Ichihara J. Biol. Chem. 272 1997 23592 23596
15. I. Matsunaga, A. Ueda, N. Fujiwara, T. Sumimoto, and K. Ichihara Lipids 34 1999 841 846
16. Q.-S. Li, J. Ogawa, and S. Shimizu Biochem. Biophys. Res. Commun. 280 2001 1258 1261
17. C.J.C. Whitehouse, S.G. Bell, H.G. Tufton, R.J.P. Kenny, L.C.I. Ogilvie, and L.L. Wong Chem. Commun. 8 2008 966 968
18. M.M.Y. Chen, C.D. Snow, C.L. Vizcarra, S.L. Mayo, and F.H. Arnold Protein Eng. Des. Sel. 25 2012 171 178
19. L. Sanchez-Sanchez, R. Roman, and R. Vazquez-Duhalt Pestic. Biochem. Physiol. 102 2012 169 174
20. B. Valderrama, M. Ayala, and R. Vazquez-Duhalt Chem. Biol. 9 2002 555 565
21. H. Wariishi, and M.H. Gold J. Biol. Chem. 265 1990 2070 2077
22. K.P. Conner, C.M. Woods, and W.M. Atkins Arch. Biochem. Biophys. 507 2011 56 65
23. T. Fox, G. Tsaprailis, and A.M. English Biochemistry 33 1994 186 191
24. R.-Q. Liu, M.A. Miller, G.W. Han, S. Hahm, L. Geren, S. Hibdon, J. Kraut, B. Durham, and F. Millett Biochemistry 33 1994 8678 8685
25. V. Schünemann, A. Trautwein, C. Jung, and J. Terner Hyperfine Interact. 141-142 2002 279 284
26. A. Ivancich, C. Jakopitsch, M. Auer, S. Un, and C. Obinger J. Am. Chem. Soc. 125 2003 14093 14102
27. A.J. Fielding, R. Singh, B. Boscolo, P.C. Loewen, E.M. Ghibaudi, and A. Ivancich Biochemistry 47 2008 9781 9792
28. T. Spolitak, J. Dawson, and D. Ballou J. Biol. Inorg. Chem. 13 2008 599 611
29. C. Bernini, R. Pogni, F.J. Ruiz-Duenas, A.T. Martinez, R. Basosi, and A. Sinicropi Phys. Chem. Chem. Phys. 13 2011 5078 5098
30. J.R. Cherry, M.H. Lamsa, P. Schneider, J. Vind, A. Svendsen, A. Jones, and A.H. Pedersen Nat. Biotechnol. 17 1999 379 384
31. H. Takahashi, and C. Miyazaki-Imamura J. Kim, S.H. Kim, P. Wang, Biomolecular catalysis American Chemical Society Symposium Series vol. 986 2008 61 75 (Chapter 3)
32. B. Valderrama, H. Garcia-Arellano, S. Giansanti, M.C. Baratto, R. Pogni, and R. Vazquez-Duhalt FASEB J. 20 2006 1233 1235
33. V. Guallar, and B. Olsen J. Inorg. Biochem. 100 2006 755 760
34. V. Guallar J. Phys. Chem. B 112 2008 13460 13464
35. V. Guallar, and F.H. Wallrapp J. R. Soc. Interface 5 2008 233 239
36. V. Guallar, and F.H. Wallrapp Biophys. Chem. 149 2010 1 11
37. W.-C. Tseng, J.-W. Lin, T.-Y. Wei, and T.-Y. Fang Anal. Biochem. 375 2008 376 378
38. F.P. Guengerich, M.V. Martin, C.D. Sohl, and Q. Cheng Nat. Protocols 4 2009 1245 1251
39. F. Wallrapp, D. Masone, and V. Guallar J. Phys. Chem. A 112 2008 12989 12994
40. M.F. Lucas, D.L. Rousseau, and V. Guallar Biochim. Biophys. Acta-Bioenerg. 1807 2011 1305 1313
41. W.L. Jorgensen, and J. Tirado-Rives J. Am. Chem. Soc. 110 1988 1657 1666
42. W.L. Jorgensen, D.S. Maxwell, and J. Tirado-Rives J. Am. Chem. Soc. 118 1996 11225 11236
43. T.H. Dunning Jr., and P.J. Hay H.F. Schaefer III Modern Theoretical Chemistry 1976 Plenum New York 1 28
44. P.J. Hay, and W.R. Wadt J. Chem. Phys. 82 1985 270 283
45. W.R. Wadt, and P.J. Hay J. Chem. Phys. 82 1985 284 298
46. G. Battistuzzi, M. Bellei, C.A. Bortolotti, and M. Sola Arch. Biochem. Biophys. 500 2010 21 36
47. M. Newcomb, R. Zhang, R.E.P. Chandrasena, J.A. Halgrimson, J.H. Horner, T.M. Makris, and S.G. Sligar J. Am. Chem. Soc. 128 2006 4580 4581
48. J. Rittle, and M.T. Green Science 330 2010 933 937
49. C.L. Hawkins, and M.J. Davies Biochim. Biophys. Acta-Bioenerg. 1504 2001 196 219
50. P.J. Winn, S.K. Lüdemann, R. Gauges, V. Lounnas, and R.C. Wade Proc. Natl. Acad. Sci. U. S. A. 99 2002 5361 5366
51. T.I. Oprea, G. Hummer, and A.E. García Proc. Natl. Acad. Sci. U. S. A. 94 1997 2133 2138
52. D. Fishelovitch, S. Shaik, H.J. Wolfson, and R. Nussinov J. Phys. Chem. B 113 2009 13018 13025
53. R. Lonsdale, J. Oláh, A.J. Mulholland, and J.N. Harvey J. Am. Chem. Soc. 133 2011 15464 15474
54. V. Guallar, M.-H. Baik, S.J. Lippard, and R.A. Friesner Proc. Natl. Acad. Sci. U. S. A. 100 2003 6998 7002
55. C.M. Bathelt, J. Zurek, A.J. Mulholland, and J.N. Harvey J. Am. Chem. Soc. 127 2005 12900 12908
56. B. Meunier, S.P. de Visser, and S. Shaik Chem. Rev. 104 2004 3947 3980
57. A. Altun, S. Shaik, and W. Thiel J. Comput. Chem. 27 2006 1324 1337
58. V. Schünemann, C. Jung, F. Lendzian, A.L. Barra, T. Teschner, and A. Trautwein Hyperfine Interact. 156-157 2004 247 256
59. T. Spolitak, J.H. Dawson, and D.P. Ballou J. Inorg. Biochem. 100 2006 2034 2044
60. G. Saab-Rincón, and B. Valderrama Antioxid. Redox Signal. 11 2009 167 192
61. E. Garcia-Ruiz, D. Gonzalez-Perez, F.J. Ruiz-Duenas, A.T. Martinez, and M. Alcalde Biochem. J. 441 2012 487 498
62. C.C. Page, C.C. Moser, X. Chen, and P.L. Dutton Nature 402 1999 47 52
63. C.M. Bathelt, A.J. Mulholland, and J.N. Harvey Dalton Trans. 2005 3470 3476
64. K.-B. Cho, H. Hirao, H. Chen, M.A. Carvajal, S. Cohen, E. Derat, W. Thiel, and S. Shaik J. Phys. Chem. A 112 2008 13128 13138
65. A. Feis, M.P. Marzocchi, M. Paoli, and G. Smulevich Biochemistry 33 1994 4577 4583
66. B.D. Howes, C.B. Schidt, K.G. Welinder, M.P. Marzocchi, J.-G. Ma, J. Zhang, J.A. Shelnutt, and G. Smulevich Biophys. J. 77 1999 478 492
67. Y. Sunatsuki, Y. Ikuta, N. Matsumoto, H. Ohta, M. Kojima, S. Iijima, S. Hayami, Y. Maeda, S. Kaizaki, and F. Dahan Angew. Chem. 115 2003 1652 1656
68. H. Chen, H. Hirao, E. Derat, I. Schlichting, and S. Shaik J. Phys. Chem. B 112 2008 9490 9500
69. H. Chen, J. Song, W. Lai, W. Wu, and S. Shaik J. Chem. Theory Comput. 6 2010 940 953
70. T.P. Barrows, and T.L. Poulos Biochemistry 44 2005 14062 14068