-
1
-
-
84859366447
-
Protease signalling: The cutting edge
-
Turk B, Turk SA, Turk V (2012) Protease signalling: The cutting edge. EMBO J 31(7):1630-1643.
-
(2012)
EMBO J
, vol.31
, Issue.7
, pp. 1630-1643
-
-
Turk, B.1
Turk, S.A.2
Turk, V.3
-
2
-
-
79251491023
-
Current strategies for probing substrate specificity of proteases
-
Poreba M, Drag M (2010) Current strategies for probing substrate specificity of proteases. Curr Med Chem 17(33):3968-3995.
-
(2010)
Curr Med Chem
, vol.17
, Issue.33
, pp. 3968-3995
-
-
Poreba, M.1
Drag, M.2
-
3
-
-
84855428544
-
New approaches for dissecting protease functions to improve probe development and drug discovery
-
Deu E, Verdoes M, Bogyo M (2012) New approaches for dissecting protease functions to improve probe development and drug discovery. Nat Struct Mol Biol 19(1):9-16.
-
(2012)
Nat Struct Mol Biol
, vol.19
, Issue.1
, pp. 9-16
-
-
Deu, E.1
Verdoes, M.2
Bogyo, M.3
-
4
-
-
50649112213
-
Activity-based protein profiling: From enzyme chemistry to proteomic chemistry
-
Cravatt BF, Wright AT, Kozarich JW (2008) Activity-based protein profiling: From enzyme chemistry to proteomic chemistry. Annu Rev Biochem 77:383-414.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 383-414
-
-
Cravatt, B.F.1
Wright, A.T.2
Kozarich, J.W.3
-
5
-
-
84862873324
-
Activity-based probes for the study of proteases: Recent advances and developments
-
Serim S, Haedke U, Verhelst SHL (2012) Activity-based probes for the study of proteases: Recent advances and developments. ChemMedChem 7(7):1146-1159.
-
(2012)
ChemMedChem
, vol.7
, Issue.7
, pp. 1146-1159
-
-
Serim, S.1
Haedke, U.2
Verhelst, S.H.L.3
-
6
-
-
74349127184
-
Taking the plunge: Integrating structural, enzymatic and computational insights into a unified model for membrane-immersed rhomboid proteolysis
-
Urban S (2010) Taking the plunge: Integrating structural, enzymatic and computational insights into a unified model for membrane-immersed rhomboid proteolysis. Biochem J 425(3):501-512.
-
(2010)
Biochem J
, vol.425
, Issue.3
, pp. 501-512
-
-
Urban, S.1
-
7
-
-
66249133368
-
How intramembrane proteases bury hydrolytic reactions in the membrane
-
Erez E, Fass D, Bibi E (2009) How intramembrane proteases bury hydrolytic reactions in the membrane. Nature 459(7245):371-378.
-
(2009)
Nature
, vol.459
, Issue.7245
, pp. 371-378
-
-
Erez, E.1
Fass, D.2
Bibi, E.3
-
8
-
-
65249188697
-
Intramembrane proteolysis
-
Wolfe MS (2009) Intramembrane proteolysis. Chem Rev 109(4):1599-1612.
-
(2009)
Chem Rev
, vol.109
, Issue.4
, pp. 1599-1612
-
-
Wolfe, M.S.1
-
9
-
-
38549096018
-
MEROPS: The peptidase database
-
DOI 10.1093/nar/gkm954
-
Rawlings ND, Morton FR, Kok CY, Kong J, Barrett AJ (2008) MEROPS: The peptidase database. Nucleic Acids Res 36(Database issue):D320-D325. (Pubitemid 351149743)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Rawlings, N.D.1
Morton, F.R.2
Kok, C.Y.3
Kong, J.4
Barrett, A.J.5
-
10
-
-
0035913908
-
Drosophila Rhomboid-1 defines a family of putative intramembrane serine proteases
-
DOI 10.1016/S0092-8674(01)00525-6
-
Urban S, Lee JR, Freeman M (2001) Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases. Cell 107(2):173-182. (Pubitemid 33035944)
-
(2001)
Cell
, vol.107
, Issue.2
, pp. 173-182
-
-
Urban, S.1
Lee, J.R.2
Freeman, M.3
-
11
-
-
0037264371
-
The rhomboids: A nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers
-
Koonin EV, et al. (2003) The rhomboids: A nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers. Genome Biol 4(3):R19.
-
(2003)
Genome Biol
, vol.4
, Issue.3
-
-
Koonin, E.V.1
-
12
-
-
35948982252
-
Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases
-
DOI 10.1101/gr.6425307
-
Lemberg MK, Freeman M (2007) Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases. Genome Res 17(11):1634-1646. (Pubitemid 350074859)
-
(2007)
Genome Research
, vol.17
, Issue.11
, pp. 1634-1646
-
-
Lemberg, M.K.1
Freeman, M.2
-
13
-
-
33846541511
-
Rhomboid protease AarA mediates quorum-sensing in Providencia stuartii by activating TatA of the twin-arginine translocase
-
DOI 10.1073/pnas.0608140104
-
Stevenson LG, et al. (2007) Rhomboid protease AarA mediates quorum-sensing in Providencia stuartii by activating TatA of the twin-arginine translocase. Proc Natl Acad Sci USA 104(3):1003-1008. (Pubitemid 46154726)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.3
, pp. 1003-1008
-
-
Stevenson, L.G.1
Strisovsky, K.2
Clemmer, K.M.3
Bhatt, S.4
Freeman, M.5
Rather, P.N.6
-
14
-
-
33750465167
-
Two Plasmodium rhomboid proteases preferentially cleave different adhesins implicated in all invasive stages of malaria
-
Baker RP, Wijetilaka R, Urban S (2006) Two Plasmodium rhomboid proteases preferentially cleave different adhesins implicated in all invasive stages of malaria. PLoS Pathog 2(10):e113.
-
(2006)
PLoS Pathog
, vol.2
, Issue.10
-
-
Baker, R.P.1
Wijetilaka, R.2
Urban, S.3
-
15
-
-
33749342018
-
Intramembrane proteolysis mediates shedding of a key adhesin during erythrocyte invasion by the malaria parasite
-
O'Donnell RA, et al. (2006) Intramembrane proteolysis mediates shedding of a key adhesin during erythrocyte invasion by the malaria parasite. J Cell Biol 174(7):1023-1033.
-
(2006)
J Cell Biol
, vol.174
, Issue.7
, pp. 1023-1033
-
-
O'Donnell, R.A.1
-
16
-
-
33750886311
-
Crystal structure of a rhomboid family intramembrane protease
-
Wang Y, Zhang Y, Ha Y (2006) Crystal structure of a rhomboid family intramembrane protease. Nature 444(7116):179-180.
-
(2006)
Nature
, vol.444
, Issue.7116
, pp. 179-180
-
-
Wang, Y.1
Zhang, Y.2
Ha, Y.3
-
17
-
-
33845365770
-
Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry
-
DOI 10.1038/nsmb1179, PII NSMB1179
-
Wu Z, et al. (2006) Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry. Nat Struct Mol Biol 13(12):1084-1091. (Pubitemid 44885918)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.12
, pp. 1084-1091
-
-
Wu, Z.1
Yan, N.2
Feng, L.3
Oberstein, A.4
Yan, H.5
Baker, R.P.6
Gu, L.7
Jeffrey, P.D.8
Urban, S.9
Shi, Y.10
-
19
-
-
79952738921
-
Insights into substrate gating in H. influenzae rhomboid
-
Brooks CL, Lazareno-Saez C, Lamoureux JS, Mak MW, Lemieux MJ (2011) Insights into substrate gating in H. influenzae rhomboid. J Mol Biol 407(5):687-697.
-
(2011)
J Mol Biol
, vol.407
, Issue.5
, pp. 687-697
-
-
Brooks, C.L.1
Lazareno-Saez, C.2
Lamoureux, J.S.3
Mak, M.W.4
Lemieux, M.J.5
-
20
-
-
70449642213
-
The processing of human rhomboid intramembrane serine protease RHBDL2 is required for its proteolytic activity
-
Lei X, Li YM (2009) The processing of human rhomboid intramembrane serine protease RHBDL2 is required for its proteolytic activity. J Mol Biol 394(5):815-825.
-
(2009)
J Mol Biol
, vol.394
, Issue.5
, pp. 815-825
-
-
Lei, X.1
Li, Y.M.2
-
21
-
-
13844306483
-
Reconstitution of intramembrane proteolysis in vitro reveals that pure rhomboid is sufficient for catalysis and specificity
-
DOI 10.1073/pnas.0408306102
-
Urban S, Wolfe MS (2005) Reconstitution of intramembrane proteolysis in vitro reveals that pure rhomboid is sufficient for catalysis and specificity. Proc Natl Acad Sci USA 102(6):1883-1888. (Pubitemid 40261981)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.6
, pp. 1883-1888
-
-
Urban, S.1
Wolfe, M.S.2
-
22
-
-
14844300797
-
Mechanism of intramembrane proteolysis investigated with purified rhomboid proteases
-
DOI 10.1038/sj.emboj.7600537
-
Lemberg MK, et al. (2005) Mechanism of intramembrane proteolysis investigated with purified rhomboid proteases. EMBO J 24(3):464-472. (Pubitemid 40343249)
-
(2005)
EMBO Journal
, vol.24
, Issue.3
, pp. 464-472
-
-
Lemberg, M.K.1
Menendez, J.2
Misik, A.3
Garcia, M.4
Koth, C.M.5
Freeman, M.6
-
23
-
-
78449268297
-
The structural basis for catalysis and substrate specificity of a rhomboid protease
-
Vinothkumar KR, et al. (2010) The structural basis for catalysis and substrate specificity of a rhomboid protease. EMBO J 29(22):3797-3809.
-
(2010)
EMBO J
, vol.29
, Issue.22
, pp. 3797-3809
-
-
Vinothkumar, K.R.1
-
24
-
-
79954613090
-
Monocyclic β-lactams are selective, mechanism-based inhibitors of rhomboid intramembrane proteases
-
Pierrat OA, et al. (2011) Monocyclic β-lactams are selective, mechanism-based inhibitors of rhomboid intramembrane proteases. ACS Chem Biol 6(4):325-335.
-
(2011)
ACS Chem Biol
, vol.6
, Issue.4
, pp. 325-335
-
-
Pierrat, O.A.1
-
25
-
-
84860711067
-
Conformational change in rhomboid protease GlpG induced by inhibitor binding to its S′ subsites
-
Xue Y, et al. (2012) Conformational change in rhomboid protease GlpG induced by inhibitor binding to its S′ subsites. Biochemistry 51(18):3723-3731.
-
(2012)
Biochemistry
, vol.51
, Issue.18
, pp. 3723-3731
-
-
Xue, Y.1
-
26
-
-
84867073516
-
Activity-based protein profiling of the Escherichia coli GlpG rhomboid protein delineates the catalytic core
-
Sherratt AR, Blais DR, Ghasriani H, Pezacki JP, Goto NK (2012) Activity-based protein profiling of the Escherichia coli GlpG rhomboid protein delineates the catalytic core. Biochemistry 51(39):7794-7803.
-
(2012)
Biochemistry
, vol.51
, Issue.39
, pp. 7794-7803
-
-
Sherratt, A.R.1
Blais, D.R.2
Ghasriani, H.3
Pezacki, J.P.4
Goto, N.K.5
-
27
-
-
26644441432
-
Proteolytic action of GlpG, a rhomboid protease in the Escherichia coli cytoplasmic membrane
-
DOI 10.1021/bi051363k
-
Maegawa S, Ito K, Akiyama Y (2005) Proteolytic action of GlpG, a rhomboid protease in the Escherichia coli cytoplasmic membrane. Biochemistry 44(41):13543-13552. (Pubitemid 41443681)
-
(2005)
Biochemistry
, vol.44
, Issue.41
, pp. 13543-13552
-
-
Maegawa, S.1
Ito, K.2
Akiyama, Y.3
-
28
-
-
3042587661
-
Increased peptide deformylase activity for N-formylmethionine processing of proteins overexpressed in Escherichia coli: Application to homogeneous rubredoxin production
-
DOI 10.1016/j.pep.2004.03.007, PII S1046592804001044
-
Tang J, Hernández G, LeMaster DM (2004) Increased peptide deformylase activity for N-formylmethionine processing of proteins overexpressed in Escherichia coli: Application to homogeneous rubredoxin production. Protein Expr Purif 36(1):100-105. (Pubitemid 38836770)
-
(2004)
Protein Expression and Purification
, vol.36
, Issue.1
, pp. 100-105
-
-
Tang, J.1
Hernandez, G.2
LeMaster, D.M.3
-
29
-
-
0033003760
-
A simple statistical parameter for use in evaluation and validation of high throughput screening assays
-
DOI 10.1177/108705719900400206
-
Zhang JH, Chung TD, Oldenburg KR (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 4(2):67-73. (Pubitemid 29278954)
-
(1999)
Journal of Biomolecular Screening
, vol.4
, Issue.2
, pp. 67-73
-
-
Zhang, J.-H.1
Chung, T.D.Y.2
Oldenburg, K.R.3
-
30
-
-
84856292019
-
Catalytic mechanism of rhomboid protease GlpG probed by 3,4-dichloroisocoumarin and diisopropyl fluorophosphonate
-
Xue Y, Ha Y (2012) Catalytic mechanism of rhomboid protease GlpG probed by 3,4-dichloroisocoumarin and diisopropyl fluorophosphonate. J Biol Chem 287(5):3099-3107.
-
(2012)
J Biol Chem
, vol.287
, Issue.5
, pp. 3099-3107
-
-
Xue, Y.1
Ha, Y.2
-
32
-
-
0000096835
-
Click chemistry: Diverse chemical function from a few good reactions
-
Kolb HC, Finn MG, Sharpless KB (2001) Click chemistry: Diverse chemical function from a few good reactions. Angew Chem Int Ed Engl 40(11):2004-2021.
-
(2001)
Angew Chem Int Ed Engl
, vol.40
, Issue.11
, pp. 2004-2021
-
-
Kolb, H.C.1
Finn, M.G.2
Sharpless, K.B.3
-
33
-
-
0037462106
-
Activity-based protein profiling in vivo using a copper(I)-catalyzed azide-alkyne [3 + 2] cycloaddition
-
DOI 10.1021/ja034490h
-
Speers AE, Adam GC, Cravatt BF (2003) Activity-based protein profiling in vivo using a copper(i)-catalyzed azide-alkyne [3 + 2] cycloaddition. J Am Chem Soc 125(16):4686-4687. (Pubitemid 36505343)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.16
, pp. 4686-4687
-
-
Speers, A.E.1
Adam, G.C.2
Cravatt, B.F.3
-
34
-
-
0027934803
-
Characterization of aarA, a pleiotrophic negative regulator of the 2'-N- Acetyltransferase in Providencia stuartii
-
Rather PN, Orosz E (1994) Characterization of aarA, a pleiotrophic negative regulator of the 2′-N-acetyltransferase in Providencia stuartii. J Bacteriol 176(16):5140-5144. (Pubitemid 24253759)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.16
, pp. 5140-5144
-
-
Rather, P.N.1
Orosz, E.2
-
35
-
-
71149098713
-
Insights into the effect of detergents on the full-length rhomboid protease from Pseudomonas aeruginosa and its cytosolic domain
-
Sherratt AR, Braganza MV, Nguyen E, Ducat T, Goto NK (2009) Insights into the effect of detergents on the full-length rhomboid protease from Pseudomonas aeruginosa and its cytosolic domain. Biochim Biophys Acta 1788(11):2444-2453.
-
(2009)
Biochim Biophys Acta
, vol.1788
, Issue.11
, pp. 2444-2453
-
-
Sherratt, A.R.1
Braganza, M.V.2
Nguyen, E.3
Ducat, T.4
Goto, N.K.5
-
36
-
-
0038771224
-
Substrate specificity of Rhomboid intramembrane proteases is governed by helix-breaking residues in the substrate transmembrane domain
-
DOI 10.1016/S1097-2765(03)00181-3
-
Urban S, Freeman M (2003) Substrate specificity of rhomboid intramembrane proteases is governed by helix-breaking residues in the substrate transmembrane domain. Mol Cell 11(6):1425-1434. (Pubitemid 36776530)
-
(2003)
Molecular Cell
, vol.11
, Issue.6
, pp. 1425-1434
-
-
Urban, S.1
Freeman, M.2
-
37
-
-
72149124813
-
Sequence-specific intramembrane proteolysis: Identification of a recognition motif in rhomboid substrates
-
Strisovsky K, Sharpe HJ, Freeman M (2009) Sequence-specific intramembrane proteolysis: Identification of a recognition motif in rhomboid substrates. Mol Cell 36(6):1048-1059.
-
(2009)
Mol Cell
, vol.36
, Issue.6
, pp. 1048-1059
-
-
Strisovsky, K.1
Sharpe, H.J.2
Freeman, M.3
-
38
-
-
0012391933
-
3-Alkoxy-7-amino-4-chloroisocoumarins - A new class of suicide substrates for serine proteases
-
Harper JW, Powers JC (1984) 3-Alkoxy-7-amino-4-chloroisocoumarins - a new class of suicide substrates for serine proteases. J Am Chem Soc 106(24):7618-7619.
-
(1984)
J Am Chem Soc
, vol.106
, Issue.24
, pp. 7618-7619
-
-
Harper, J.W.1
Powers, J.C.2
-
39
-
-
0025265667
-
Reaction of porcine pancreatic elastase with 7-substituted 3-alkoxy-4-chloroisocoumarins: Design of potent inhibitors using the crystal structure of the complex formed with 4-chloro-3-ethoxy-7-guanidinoisocoumarin
-
Powers JC, Oleksyszyn J, Narasimhan SL, Kam CM (1990) Reaction of porcine pancreatic elastase with 7-substituted 3-alkoxy-4-chloroisocoumarins: Design of potent inhibitors using the crystal structure of the complex formed with 4-chloro-3-ethoxy-7-guanidinoisocoumarin. Biochemistry 29(12):3108-3118. (Pubitemid 20119310)
-
(1990)
Biochemistry
, vol.29
, Issue.12
, pp. 3108-3118
-
-
Powers, J.C.1
Oleksyszyn, J.2
Narasimhan, S.L.3
Kam, C.-M.4
Radhakrishnan, R.5
Meyer Jr., E.F.6
-
40
-
-
0025980157
-
Structural study of porcine pancreatic elastase complexed with 7-amino-3-(2-bromoethoxy)-4-chloroisocoumarin as a nonreactivatable doubly covalent enzyme-inhibitor complex
-
Vijayalakshmi J, Meyer EF, Jr., Kam CM, Powers JC (1991) Structural study of porcine pancreatic elastase complexed with 7-amino-3-(2-bromoethoxy)-4- chloroisocoumarin as a nonreactivatable doubly covalent enzyme-inhibitor complex. Biochemistry 30(8):2175-2183.
-
(1991)
Biochemistry
, vol.30
, Issue.8
, pp. 2175-2183
-
-
Vijayalakshmi, J.1
Meyer Jr., E.F.2
Kam, C.M.3
Powers, J.C.4
-
41
-
-
84855811087
-
Alkyne derivatives of isocoumarins as clickable activity-based probes for serine proteases
-
Haedke U, Götz M, Baer P, Verhelst SHL (2012) Alkyne derivatives of isocoumarins as clickable activity-based probes for serine proteases. Bioorg Med Chem 20(2):633-640.
-
(2012)
Bioorg Med Chem
, vol.20
, Issue.2
, pp. 633-640
-
-
Haedke, U.1
Götz, M.2
Baer, P.3
Verhelst, S.H.L.4
-
42
-
-
65549091985
-
Synthesis of beta-aminoethanesulfonyl fluorides or 2-substituted taurine sulfonyl fluorides as potential protease inhibitors
-
Brouwer AJ, Ceylan T, van der Linden T, Liskamp RMJ (2009) Synthesis of beta-aminoethanesulfonyl fluorides or 2-substituted taurine sulfonyl fluorides as potential protease inhibitors. Tetrahedron Lett 50(26):3391-3393.
-
(2009)
Tetrahedron Lett
, vol.50
, Issue.26
, pp. 3391-3393
-
-
Brouwer, A.J.1
Ceylan, T.2
Van Der Linden, T.3
Liskamp, R.M.J.4
-
43
-
-
79953221417
-
Synthesis and biological evaluation of novel irreversible serine protease inhibitors using amino acid based sulfonyl fluorides as an electrophilic trap
-
Brouwer AJ, Ceylan T, Jonker AM, van der Linden T, Liskamp RMJ (2011) Synthesis and biological evaluation of novel irreversible serine protease inhibitors using amino acid based sulfonyl fluorides as an electrophilic trap. Bioorg Med Chem 19(7):2397-2406.
-
(2011)
Bioorg Med Chem
, vol.19
, Issue.7
, pp. 2397-2406
-
-
Brouwer, A.J.1
Ceylan, T.2
Jonker, A.M.3
Van Der Linden, T.4
Liskamp, R.M.J.5
|