-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66 (Part 2): 213-221
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 2
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
2
-
-
33750465167
-
Two Plasmodium rhomboid proteases preferentially cleave different adhesins implicated in all invasive stages of malaria
-
Baker RP, Wijetilaka R, Urban S (2006) Two Plasmodium rhomboid proteases preferentially cleave different adhesins implicated in all invasive stages of malaria. PLoS Pathog 2: e113
-
(2006)
PLoS Pathog
, vol.2
-
-
Baker, R.P.1
Wijetilaka, R.2
Urban, S.3
-
3
-
-
34347250499
-
Enzymatic analysis of a rhomboid intramembrane protease implicates trans-membrane helix 5 as the lateral substrate gate
-
Baker RP, Young K, Feng L, Shi Y, Urban S (2007) Enzymatic analysis of a rhomboid intramembrane protease implicates trans-membrane helix 5 as the lateral substrate gate. Proc Natl Acad Sci USA 104: 8257-8262
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8257-8262
-
-
Baker, R.P.1
Young, K.2
Feng, L.3
Shi, Y.4
Urban, S.5
-
4
-
-
45349108992
-
An Entamoeba histolytica rhomboid protease with atypical specificity cleaves a surface lectin involved in phagocytosis and immune evasion
-
Baxt LA, Baker RP, Singh U, Urban S (2008) An Entamoeba histolytica rhomboid protease with atypical specificity cleaves a surface lectin involved in phagocytosis and immune evasion. Genes Dev 22: 1636-1646
-
(2008)
Genes Dev
, vol.22
, pp. 1636-1646
-
-
Baxt, L.A.1
Baker, R.P.2
Singh, U.3
Urban, S.4
-
5
-
-
33846275257
-
Structural basis for intramem-brane proteolysis by rhomboid serine proteases
-
Ben-Shem A, Fass D, Bibi E (2007) Structural basis for intramem-brane proteolysis by rhomboid serine proteases. Proc Natl Acad Sci USA 104: 462-466
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 462-466
-
-
Ben-Shem, A.1
Fass, D.2
Bibi, E.3
-
6
-
-
84987278622
-
Structure and Substrate Specificity in the serine enzymes
-
Blow D (1974) Structure and Substrate Specificity in the serine enzymes. Isr J Chem 12: 483-494
-
(1974)
Isr J Chem
, vol.12
, pp. 483-494
-
-
Blow, D.1
-
7
-
-
0024571818
-
Human leukocyte and porcine pancreatic elastase: X-ray crystal structures, mechanism, substrate specificity, and mechanism-based inhibitors
-
Bode W, Meyer Jr E, Powers JC (1989) Human leukocyte and porcine pancreatic elastase: X-ray crystal structures, mechanism, substrate specificity, and mechanism-based inhibitors. Biochemistry 28: 1951-1963
-
(1989)
Biochemistry
, vol.28
, pp. 1951-1963
-
-
Bode, W.1
Meyer Jr., E.2
Powers, J.C.3
-
8
-
-
61549125968
-
Rhomboid protease dynamics and lipid interactions
-
Bondar AN, del Val C, White SH (2009) Rhomboid protease dynamics and lipid interactions. Structure 17: 395-405
-
(2009)
Structure
, vol.17
, pp. 395-405
-
-
Bondar, A.N.1
Del Val, C.2
White, S.H.3
-
9
-
-
0343006258
-
Site-directed mutagenesis and the role of the oxyanion hole in subtilisin
-
Bryan P, Pantoliano MW, Quill SG, Hsiao HY, Poulos T (1986) Site-directed mutagenesis and the role of the oxyanion hole in subtilisin. Proc Natl Acad Sci USA 83: 3743-3745
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 3743-3745
-
-
Bryan, P.1
Pantoliano, M.W.2
Quill, S.G.3
Hsiao, H.Y.4
Poulos, T.5
-
10
-
-
0034691249
-
Mutational evidence of transition state stabilization by serine 88 in Escherichia coli type i signal peptidase
-
Carlos JL, Klenotic PA, Paetzel M, Strynadka NC, Dalbey RE (2000) Mutational evidence of transition state stabilization by serine 88 in Escherichia coli type I signal peptidase. Biochemistry 39: 7276-7283
-
(2000)
Biochemistry
, vol.39
, pp. 7276-7283
-
-
Carlos, J.L.1
Klenotic, P.A.2
Paetzel, M.3
Strynadka, N.C.4
Dalbey, R.E.5
-
11
-
-
0025048045
-
The 2.2 Aresolution X-ray crystal structure of the complex of trypsin inhibited by 4-chloro-3-ethoxy-7-guanidinoisocoumarin: A proposed model of the thrombin-inhibitor complex
-
Chow MM, Meyer Jr EF, Bode W, Kam CM, Radhakrishnan R, Vijayalakshmi J, Powers JC (1990) The 2.2 Aresolution X-ray crystal structure of the complex of trypsin inhibited by 4-chloro-3-ethoxy-7-guanidinoisocoumarin: a proposed model of the thrombin-inhibitor complex. J Am Chem Soc 112: 7783-7789
-
(1990)
J Am Chem Soc
, vol.112
, pp. 7783-7789
-
-
Chow, M.M.1
Meyer Jr., E.F.2
Bode, W.3
Kam, C.M.4
Radhakrishnan, R.5
Vijayalakshmi, J.6
Powers, J.C.7
-
12
-
-
33745685054
-
Mitochondrial rhomboid PARL regulates cytochrome c release during apoptosis via OPA1-dependent cristae remodeling
-
0Hooge R, Scorrano L, De Strooper B (2006) Mitochondrial rhomboid PARL regulates cytochrome c release during apoptosis via OPA1-dependent cristae remodeling. Cell 126: 163-175
-
(2006)
Cell
, vol.126
, pp. 163-175
-
-
Cipolat, S.1
Rudka, T.2
Hartmann, D.3
Costa, V.4
Serneels, L.5
Craessaerts, K.6
Metzger, K.7
Frezza, C.8
Annaert, W.9
D'Adamio, L.10
Derks, C.11
Dejaegere, T.12
Pellegrini, L.13
D'Hooge, R.14
Scorrano, L.15
De Strooper, B.16
-
13
-
-
0033535504
-
A presenilin-1-dependent gamma-secretase-like protease mediates release of Notch intracellular domain
-
De Strooper B, Annaert W, Cupers P, Saftig P, Craessaerts K, Mumm JS, Schroeter EH, Schrijvers V, Wolfe MS, Ray WJ, Goate A, Kopan R (1999) A presenilin-1-dependent gamma-secretase-like protease mediates release of Notch intracellular domain. Nature 398: 518-522
-
(1999)
Nature
, vol.398
, pp. 518-522
-
-
De Strooper, B.1
Annaert, W.2
Cupers, P.3
Saftig, P.4
Craessaerts, K.5
Mumm, J.S.6
Schroeter, E.H.7
Schrijvers, V.8
Wolfe, M.S.9
Ray, W.J.10
Goate, A.11
Kopan, R.12
-
15
-
-
56749154097
-
Unconventional serine proteases: Variations on the catalytic Ser/His/Asp triad configuration
-
Ekici OD, Paetzel M, Dalbey RE (2008) Unconventional serine proteases: variations on the catalytic Ser/His/Asp triad configuration. Protein Sci 17: 2023-2037
-
(2008)
Protein Sci
, vol.17
, pp. 2023-2037
-
-
Ekici, O.D.1
Paetzel, M.2
Dalbey, R.E.3
-
16
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60 (Part 12, Part 1): 2126-2132
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 12 AND PART 1
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
17
-
-
33644875355
-
Scaling and assessment of data quality
-
Evans P (2006) Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr 62(Part 1): 72-82
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, Issue.PART 1
, pp. 72-82
-
-
Evans, P.1
-
18
-
-
58549108805
-
Rhomboid proteases and their biological functions
-
Freeman M (2008) Rhomboid proteases and their biological functions. Annu Rev Genet 42: 191-210
-
(2008)
Annu Rev Genet
, vol.42
, pp. 191-210
-
-
Freeman, M.1
-
19
-
-
63649088506
-
Structure and mechanism of intramembrane protease
-
Ha Y (2009) Structure and mechanism of intramembrane protease. Semin Cell Dev Biol 20: 240-250
-
(2009)
Semin Cell Dev Biol
, vol.20
, pp. 240-250
-
-
Ha, Y.1
-
20
-
-
0022271601
-
Reaction of serine proteases with substituted isocoumarins: Discovery of 3,4-dichloroisocou-marin, a new general mechanism based serine protease inhibitor
-
Harper JW, Hemmi K, Powers JC (1985) Reaction of serine proteases with substituted isocoumarins: discovery of 3,4-dichloroisocou-marin, a new general mechanism based serine protease inhibitor. Biochemistry 24: 1831-1841
-
(1985)
Biochemistry
, vol.24
, pp. 1831-1841
-
-
Harper, J.W.1
Hemmi, K.2
Powers, J.C.3
-
21
-
-
36949069459
-
Inhibition of chymotrypsin by diethyl p-nitrophenyl phosphate
-
Hartley BS, Kilby BA (1950) Inhibition of chymotrypsin by diethyl p-nitrophenyl phosphate. Nature 166: 784-785
-
(1950)
Nature
, vol.166
, pp. 784-785
-
-
Hartley, B.S.1
Kilby, B.A.2
-
23
-
-
0014945734
-
Structure of crystalline alpha-chymotrypsin. IV. The structure of indoleacryloyl-alpha-chyotrypsin and its relevance to the hydrolytic mechanism of the enzyme
-
Henderson R (1970) Structure of crystalline alpha-chymotrypsin. IV. The structure of indoleacryloyl-alpha-chyotrypsin and its relevance to the hydrolytic mechanism of the enzyme. J Mol Biol 54: 341-354
-
(1970)
J Mol Biol
, vol.54
, pp. 341-354
-
-
Henderson, R.1
-
24
-
-
0042526632
-
Processing of Mgm1 by the rhomboid-type protease Pcp1 is required for maintenance of mitochondrial morphology and of mitochondrial DNA
-
Herlan M, Vogel F, Bornhovd C, Neupert W, Reichert AS (2003) Processing of Mgm1 by the rhomboid-type protease Pcp1 is required for maintenance of mitochondrial morphology and of mitochondrial DNA. J Biol Chem 278: 27781-27788
-
(2003)
J Biol Chem
, vol.278
, pp. 27781-27788
-
-
Herlan, M.1
Vogel, F.2
Bornhovd, C.3
Neupert, W.4
Reichert, A.S.5
-
25
-
-
22544468788
-
Distinct mechanisms govern proteolytic shedding of a key invasion protein in apicomplexan pathogens
-
Howell SA, Hackett F, Jongco AM, Withers-Martinez C, Kim K, Carruthers VB, Blackman MJ (2005) Distinct mechanisms govern proteolytic shedding of a key invasion protein in apicomplexan pathogens. Mol Microbiol 57: 1342-1356
-
(2005)
Mol Microbiol
, vol.57
, pp. 1342-1356
-
-
Howell, S.A.1
Hackett, F.2
Jongco, A.M.3
Withers-Martinez, C.4
Kim, K.5
Carruthers, V.B.6
Blackman, M.J.7
-
26
-
-
0037264371
-
The rhomboids: A nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers
-
Koonin EV, Makarova KS, Rogozin IB, Davidovic L, Letellier MC, Pellegrini L (2003) The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers. Genome Biol 4: R19
-
(2003)
Genome Biol
, vol.4
-
-
Koonin, E.V.1
Makarova, K.S.2
Rogozin, I.B.3
Davidovic, L.4
Letellier, M.C.5
Pellegrini, L.6
-
27
-
-
0035913906
-
Regulated intracel-lular ligand transport and proteolysis control EGF signal activation in Drosophila
-
Lee JR, Urban S, Garvey CF, Freeman M (2001) Regulated intracel-lular ligand transport and proteolysis control EGF signal activation in Drosophila. Cell 107: 161-171
-
(2001)
Cell
, vol.107
, pp. 161-171
-
-
Lee, J.R.1
Urban, S.2
Garvey, C.F.3
Freeman, M.4
-
28
-
-
35748982195
-
Cutting proteins within lipid bilayers: Rhomboid structure and mechanism
-
Freeman M
-
Lemberg MK, Freeman M (2007a) Cutting proteins within lipid bilayers: rhomboid structure and mechanism. Mol Cell 28: 930-940
-
(2007)
Mol Cell
, vol.28
, pp. 930-940
-
-
Lemberg, M.K.1
-
29
-
-
35948982252
-
Functional and evolutionary implications of enhanced genomic analysis of rhomboid intra-membrane proteases
-
Freeman M
-
Lemberg MK, Freeman M (2007b) Functional and evolutionary implications of enhanced genomic analysis of rhomboid intra-membrane proteases. Genome Res 17: 1634-1646
-
(2007)
Genome Res
, vol.17
, pp. 1634-1646
-
-
Lemberg, M.K.1
-
30
-
-
14844300797
-
Mechanism of intramembrane proteolysis investigated with purified rhomboid proteases
-
Freeman M
-
Lemberg MK, Menendez J, Misik A, Garcia M, Koth CM, Freeman M (2005) Mechanism of intramembrane proteolysis investigated with purified rhomboid proteases. EMBO J 24: 464-472
-
(2005)
EMBO J
, vol.24
, pp. 464-472
-
-
Lemberg, M.K.1
Menendez, J.2
Misik, A.3
Garcia, M.4
Koth, C.M.5
-
31
-
-
33846543356
-
The crystal structure of the rhomboid peptidase from Haemophilus influenzae provides insight into intramembrane proteolysis
-
Lemieux MJ, Fischer SJ, Cherney MM, Bateman KS, James MN (2007) The crystal structure of the rhomboid peptidase from Haemophilus influenzae provides insight into intramembrane proteolysis. Proc Natl Acad Sci USA 104: 750-754
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 750-754
-
-
Lemieux, M.J.1
Fischer, S.J.2
Cherney, M.M.3
Bateman, K.S.4
James, M.N.5
-
32
-
-
33644874235
-
The integration of macromolecular diffraction data
-
Leslie AG (2006) The integration of macromolecular diffraction data. Acta Crystallogr D Biol Crystallogr 62(Part 1): 48-57
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, Issue.PART 1
, pp. 48-57
-
-
Leslie, A.G.1
-
33
-
-
1242288387
-
Diverse substrate recognition mechanisms for rhomboids; Thrombomodulin is cleaved by mammalian rhomboids
-
Lohi O, Urban S, Freeman M (2004) Diverse substrate recognition mechanisms for rhomboids; thrombomodulin is cleaved by mammalian rhomboids. Curr Biol 14: 236-241
-
(2004)
Curr Biol
, vol.14
, pp. 236-241
-
-
Lohi, O.1
Urban, S.2
Freeman, M.3
-
34
-
-
34247370690
-
The intramembrane active site of GlpG, an E. coli rhomboid protease, is accessible to water and hydrolyses an extramembrane peptide bond of substrates
-
Maegawa S, Koide K, Ito K, Akiyama Y (2007) The intramembrane active site of GlpG, an E. coli rhomboid protease, is accessible to water and hydrolyses an extramembrane peptide bond of substrates. Mol Microbiol 64: 435-447
-
(2007)
Mol Microbiol
, vol.64
, pp. 435-447
-
-
Maegawa, S.1
Koide, K.2
Ito, K.3
Akiyama, Y.4
-
35
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ (2007) Phaser crystallographic software. J Appl Crystallogr 40(Part 4): 658-674
-
(2007)
J Appl Crystallogr
, vol.40
, Issue.PART 4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
36
-
-
0038700756
-
Mitochondrial membrane remodelling regulated by a conserved rhomboid protease
-
McQuibban GA, Saurya S, Freeman M (2003) Mitochondrial membrane remodelling regulated by a conserved rhomboid protease. Nature 423: 537-541
-
(2003)
Nature
, vol.423
, pp. 537-541
-
-
McQuibban, G.A.1
Saurya, S.2
Freeman, M.3
-
37
-
-
0001522448
-
Steresospecific reaction of 3-methoxy-4-chloro-7-aminoisocoumarin with crystalline porcine pancreatic elastase
-
Meyer Jr EF, Presta LG, Radhakrishnan R (1985) Steresospecific reaction of 3-methoxy-4-chloro-7-aminoisocoumarin with crystalline porcine pancreatic elastase. J Am Chem Soc 107: 4091-4093
-
(1985)
J Am Chem Soc
, vol.107
, pp. 4091-4093
-
-
Meyer Jr., E.F.1
Presta, L.G.2
Radhakrishnan, R.3
-
38
-
-
0030593468
-
Over-production of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels
-
Miroux B, Walker JE (1996) Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J Mol Biol 260: 289-298
-
(1996)
J Mol Biol
, vol.260
, pp. 289-298
-
-
Miroux, B.1
Walker, J.E.2
-
39
-
-
0014030459
-
Structural specificity of alpha-chymotrypsin: Polypeptide substrates
-
Neil GL, Niemann C, Hein GE (1966) Structural specificity of alpha-chymotrypsin: polypeptide substrates. Nature 210: 903-907
-
(1966)
Nature
, vol.210
, pp. 903-907
-
-
Neil, G.L.1
Niemann, C.2
Hein, G.E.3
-
40
-
-
33749342018
-
Intramembrane proteolysis mediates shedding of a key adhesin during erythrocyte invasion by the malaria parasite
-
O'Donnell RA, Hackett F, Howell SA, Treeck M, Struck N, Krnajski Z, Withers-Martinez C, Gilberger TW, Blackman MJ (2006) Intramembrane proteolysis mediates shedding of a key adhesin during erythrocyte invasion by the malaria parasite. J Cell Biol 174: 1023-1033
-
(2006)
J Cell Biol
, vol.174
, pp. 1023-1033
-
-
O'Donnell, R.A.1
Hackett, F.2
Howell, S.A.3
Treeck, M.4
Struck, N.5
Krnajski, Z.6
Withers-Martinez, C.7
Gilberger, T.W.8
Blackman, M.J.9
-
41
-
-
0037007235
-
Intramembrane cleavage of microneme proteins at the surface of the apicomplexan parasite Toxoplasma gondii
-
Opitz C, Di Cristina M, Reiss M, Ruppert T, Crisanti A, Soldati D (2002) Intramembrane cleavage of microneme proteins at the surface of the apicomplexan parasite Toxoplasma gondii. EMBO J 21: 1577-1585
-
(2002)
EMBO J
, vol.21
, pp. 1577-1585
-
-
Opitz, C.1
Di Cristina, M.2
Reiss, M.3
Ruppert, T.4
Crisanti, A.5
Soldati, D.6
-
42
-
-
0028914722
-
Structural basis of substrate specificity in the serine proteases
-
Perona JJ, Craik CS (1995) Structural basis of substrate specificity in the serine proteases. Protein Sci 4: 337-360
-
(1995)
Protein Sci
, vol.4
, pp. 337-360
-
-
Perona, J.J.1
Craik, C.S.2
-
43
-
-
27144523783
-
The catalytic triad of serine peptidases
-
Polgar L (2005) The catalytic triad of serine peptidases. Cell Mol Life Sci 62: 2161-2172
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 2161-2172
-
-
Polgar, L.1
-
44
-
-
0033212804
-
The Rossmann Fourier autoindexing algorithm in MOSFLM
-
Powell HR (1999) The Rossmann Fourier autoindexing algorithm in MOSFLM. Acta Crystallogr D Biol Crystallogr 55 (Part 10): 1690-1695
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, Issue.PART 10
, pp. 1690-1695
-
-
Powell, H.R.1
-
45
-
-
0036882396
-
Irreversible inhibitors of serine, cysteine, and threonine proteases
-
Powers JC, Asgian JL, Ekici OD, James KE (2002) Irreversible inhibitors of serine, cysteine, and threonine proteases. Chem Rev 102: 4639-4750
-
(2002)
Chem Rev
, vol.102
, pp. 4639-4750
-
-
Powers, J.C.1
Asgian, J.L.2
Ekici, O.D.3
James, K.E.4
-
46
-
-
0025265667
-
Reaction of porcine pancreatic elastase with 7-substituted 3-alkoxy-4-chloroisocoumarins: Design of potent inhibitors using the crystal structure of the complex formed with 4-chloro-3-ethoxy-7-guani-dinoisocoumarin
-
Powers JC, Oleksyszyn J, Narasimhan SL, Kam CM (1990) Reaction of porcine pancreatic elastase with 7-substituted 3-alkoxy-4-chloroisocoumarins: design of potent inhibitors using the crystal structure of the complex formed with 4-chloro-3-ethoxy-7-guani-dinoisocoumarin. Biochemistry 29: 3108-3118
-
(1990)
Biochemistry
, vol.29
, pp. 3108-3118
-
-
Powers, J.C.1
Oleksyszyn, J.2
Narasimhan, S.L.3
Kam, C.M.4
-
47
-
-
0032561323
-
Isolation of cholesterol-requiring mutant Chinese hamster ovary cells with defects in cleavage of sterol regulatory element-binding proteins at site 1
-
Rawson RB, Cheng D, Brown MS, Goldstein JL (1998) Isolation of cholesterol-requiring mutant Chinese hamster ovary cells with defects in cleavage of sterol regulatory element-binding proteins at site 1. J Biol Chem 273: 28261-28269
-
(1998)
J Biol Chem
, vol.273
, pp. 28261-28269
-
-
Rawson, R.B.1
Cheng, D.2
Brown, M.S.3
Goldstein, J.L.4
-
48
-
-
0015497445
-
Subtilisin; A stereochemical mechanism involving transition-state stabilization
-
Robertus JD, Kraut J, Alden RA, Birktoft JJ (1972) Subtilisin; a stereochemical mechanism involving transition-state stabilization. Biochemistry 11 : 4293-4303
-
(1972)
Biochemistry
, vol.11
, pp. 4293-4303
-
-
Robertus, J.D.1
Kraut, J.2
Alden, R.A.3
Birktoft, J.J.4
-
49
-
-
77955085749
-
Intramembrane proteolysis of Mgm1 by the mitochondrial rhomboid protease is highly promiscuous regarding the sequence of the cleaved hydrophobic segment
-
Schafer A, Zick M, Kief J, Steger M, Heide H, Duvezin-Caubet S, Neupert W, Reichert AS (2010) Intramembrane proteolysis of Mgm1 by the mitochondrial rhomboid protease is highly promiscuous regarding the sequence of the cleaved hydrophobic segment. J Mol Biol 401: 182-193
-
(2010)
J Mol Biol
, vol.401
, pp. 182-193
-
-
Schafer, A.1
Zick, M.2
Kief, J.3
Steger, M.4
Heide, H.5
Duvezin-Caubet, S.6
Neupert, W.7
Reichert, A.S.8
-
50
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
Schechter I, Berger A (1967) On the size of the active site in proteases. I. Papain. Biochem Biophys Res Commun 27: 157-162
-
(1967)
Biochem Biophys Res Commun
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
51
-
-
7544226311
-
PRODRG: A tool for high-throughput crystallography of protein-ligand complexes
-
Schuttelkopf AW, van Aalten DM (2004) PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr D Biol Crystallogr 60(Part 8): 1355-1363
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 8
, pp. 1355-1363
-
-
Schuttelkopf, A.W.1
Van Aalten, D.M.2
-
52
-
-
33846541511
-
Rhomboid protease AarA mediates quorum-sensing in Providencia stuartii by activating TatA of the twin-arginine translocase
-
Stevenson LG, Strisovsky K, Clemmer KM, Bhatt S, Freeman M, Rather PN (2007) Rhomboid protease AarA mediates quorum-sensing in Providencia stuartii by activating TatA of the twin-arginine translocase. Proc Natl Acad Sci USA 104: 1003-1008
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1003-1008
-
-
Stevenson, L.G.1
Strisovsky, K.2
Clemmer, K.M.3
Bhatt, S.4
Freeman, M.5
Rather, P.N.6
-
53
-
-
72149124813
-
Sequence-specific intramembrane proteolysis: Identification of a recognition motif in rhomboid substrates
-
Strisovsky K, Sharpe HJ, Freeman M (2009) Sequence-specific intramembrane proteolysis: identification of a recognition motif in rhomboid substrates. Mol Cell 36: 1048-1059
-
(2009)
Mol Cell
, vol.36
, pp. 1048-1059
-
-
Strisovsky, K.1
Sharpe, H.J.2
Freeman, M.3
-
54
-
-
33846490396
-
M-AAA protease-driven membrane dislocation allows intramem-brane cleavage by rhomboid in mitochondria
-
Tatsuta T, Augustin S, Nolden M, Friedrichs B, Langer T (2007) m-AAA protease-driven membrane dislocation allows intramem-brane cleavage by rhomboid in mitochondria. EMBO J 26: 325-335
-
(2007)
EMBO J
, vol.26
, pp. 325-335
-
-
Tatsuta, T.1
Augustin, S.2
Nolden, M.3
Friedrichs, B.4
Langer, T.5
-
55
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: programs for protein crystallography (1994) Acta Crystallogr D Biol Crystallogr 50(Part 5): 760-763
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, Issue.PART 5
, pp. 760-763
-
-
-
56
-
-
33748308883
-
Targeting proteases: Successes, failures and future prospects
-
Turk B (2006) Targeting proteases: successes, failures and future prospects. Nat Rev Drug Discov 5: 785-799
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 785-799
-
-
Turk, B.1
-
57
-
-
17244364283
-
Proteases universally recognize beta strands in their active sites
-
Tyndall JD, Nall T, Fairlie DP (2005) Proteases universally recognize beta strands in their active sites. Chem Rev 105: 973-999
-
(2005)
Chem Rev
, vol.105
, pp. 973-999
-
-
Tyndall, J.D.1
Nall, T.2
Fairlie, D.P.3
-
58
-
-
74349127184
-
Taking the plunge: Integrating structural, enzymatic and computational insights into a unified model for membrane-immersed rhomboid proteolysis
-
Urban S (2009) Taking the plunge: integrating structural, enzymatic and computational insights into a unified model for membrane-immersed rhomboid proteolysis. Biochem J 425: 501-512
-
(2009)
Biochem J
, vol.425
, pp. 501-512
-
-
Urban, S.1
-
59
-
-
0038771224
-
Substrate specificity of rhomboid intramembrane proteases is governed by helix-breaking residues in the substrate transmembrane domain
-
Urban S, Freeman M (2003) Substrate specificity of rhomboid intramembrane proteases is governed by helix-breaking residues in the substrate transmembrane domain. Mol Cell 11 : 1425-1434
-
(2003)
Mol Cell
, vol.11
, pp. 1425-1434
-
-
Urban, S.1
Freeman, M.2
-
60
-
-
0035913908
-
Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases
-
Urban S, Lee JR, Freeman M (2001) Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases. Cell 107 : 173-182
-
(2001)
Cell
, vol.107
, pp. 173-182
-
-
Urban, S.1
Lee, J.R.2
Freeman, M.3
-
61
-
-
0037015265
-
Conservation of intramem-brane proteolytic activity and substrate specificity in prokaryotic and eukaryotic rhomboids
-
Urban S, Schlieper D, Freeman M (2002) Conservation of intramem-brane proteolytic activity and substrate specificity in prokaryotic and eukaryotic rhomboids. Curr Biol 12: 1507-1512
-
(2002)
Curr Biol
, vol.12
, pp. 1507-1512
-
-
Urban, S.1
Schlieper, D.2
Freeman, M.3
-
62
-
-
13844306483
-
Reconstitution of intramembrane pro-teolysis in vitro reveals that pure rhomboid is sufficient for catalysis and specificity
-
Urban S, Wolfe MS (2005) Reconstitution of intramembrane pro-teolysis in vitro reveals that pure rhomboid is sufficient for catalysis and specificity. Proc Natl Acad Sci USA 102: 1883-1888
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 1883-1888
-
-
Urban, S.1
Wolfe, M.S.2
-
63
-
-
0025980157
-
Structural study of porcine pancreatic elastase complexed with 7-amino-3-(2-bromoethoxy)-4-chloroisocoumarin as a nonreactivatable doubly covalent enzyme-inhibitor complex
-
Vijayalakshmi J, Meyer Jr EF, Kam CM, Powers JC (1991) Structural study of porcine pancreatic elastase complexed with 7-amino-3-(2-bromoethoxy)-4- chloroisocoumarin as a nonreactivatable doubly covalent enzyme-inhibitor complex. Biochemistry 30: 2175-2183
-
(1991)
Biochemistry
, vol.30
, pp. 2175-2183
-
-
Vijayalakshmi, J.1
Meyer Jr., E.F.2
Kam, C.M.3
Powers, J.C.4
-
64
-
-
33847793631
-
Open-cap conformation of intramembrane protease GlpG
-
Wang Y, Ha Y (2007) Open-cap conformation of intramembrane protease GlpG. Proc Natl Acad Sci USA 104: 2098-2102
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2098-2102
-
-
Wang, Y.1
Ha, Y.2
-
65
-
-
35748974498
-
The role of L1 loop in the mechanism of rhomboid intramembrane protease GlpG
-
Wang Y, Maegawa S, Akiyama Y, Ha Y (2007) The role of L1 loop in the mechanism of rhomboid intramembrane protease GlpG. J Mol Biol 374: 1104-1113
-
(2007)
J Mol Biol
, vol.374
, pp. 1104-1113
-
-
Wang, Y.1
Maegawa, S.2
Akiyama, Y.3
Ha, Y.4
-
66
-
-
33750886311
-
Crystal structure of a rhomboid family intramembrane protease
-
Wang Y, Zhang Y, Ha Y (2006) Crystal structure of a rhomboid family intramembrane protease. Nature 444: 179-180
-
(2006)
Nature
, vol.444
, pp. 179-180
-
-
Wang, Y.1
Zhang, Y.2
Ha, Y.3
-
67
-
-
0034234250
-
A family of rhomboidlike genes: Drosophila rhomboid-1 and roughoid/rhomboid-3 cooperate to activate EGF receptor signaling
-
Wasserman JD, Urban S, Freeman M (2000) A family of rhomboidlike genes: Drosophila rhomboid-1 and roughoid/rhomboid-3 cooperate to activate EGF receptor signaling. Genes Dev 14: 1651-1663
-
(2000)
Genes Dev
, vol.14
, pp. 1651-1663
-
-
Wasserman, J.D.1
Urban, S.2
Freeman, M.3
-
68
-
-
0037150672
-
Identification of signal peptide peptidase, a presenilin-type aspar-tic protease
-
Weihofen A, Binns K, Lemberg MK, Ashman K, Martoglio B (2002) Identification of signal peptide peptidase, a presenilin-type aspar-tic protease. Science 296: 2215-2218
-
(2002)
Science
, vol.296
, pp. 2215-2218
-
-
Weihofen, A.1
Binns, K.2
Lemberg, M.K.3
Ashman, K.4
Martoglio, B.5
-
69
-
-
4143084775
-
Intramembrane proteolysis: Theme and variations
-
Wolfe MS, Kopan R (2004) Intramembrane proteolysis: theme and variations. Science 305: 1119-1123
-
(2004)
Science
, vol.305
, pp. 1119-1123
-
-
Wolfe, M.S.1
Kopan, R.2
-
70
-
-
33845365770
-
Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry
-
Wu Z, Yan N, Feng L, Oberstein A, Yan H, Baker RP, Gu L, Jeffrey PD, Urban S, Shi Y (2006) Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry. Nat Struct Mol Biol 13: 1084-1091
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 1084-1091
-
-
Wu, Z.1
Yan, N.2
Feng, L.3
Oberstein, A.4
Yan, H.5
Baker, R.P.6
Gu, L.7
Jeffrey, P.D.8
Urban, S.9
Shi, Y.10
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