-
1
-
-
79960102830
-
Validation of heavy-water stable isotope probing for the characterization of rapidly responding soil bacteria
-
Aanderud Z.T., Lennon J.T. Validation of heavy-water stable isotope probing for the characterization of rapidly responding soil bacteria. Appl Environ Microbiol 2011, 77:4589-4596.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 4589-4596
-
-
Aanderud, Z.T.1
Lennon, J.T.2
-
2
-
-
0242573148
-
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function
-
Adamczyk J., Hesselsoe M., Iversen N., Horn M., Lehner A., Nielsen P.H., et al. The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Appl Environ Microbiol 2003, 69:6875-6887.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6875-6887
-
-
Adamczyk, J.1
Hesselsoe, M.2
Iversen, N.3
Horn, M.4
Lehner, A.5
Nielsen, P.H.6
-
3
-
-
34547098835
-
Bioremediation and monitoring of aromatic-polluted habitats
-
Andreoni V., Gianfreda L. Bioremediation and monitoring of aromatic-polluted habitats. Appl Microbiol Biotechnol 2007, 76:287-308.
-
(2007)
Appl Microbiol Biotechnol
, vol.76
, pp. 287-308
-
-
Andreoni, V.1
Gianfreda, L.2
-
4
-
-
0033161440
-
Bioremediation of trichloroethylene and cis-1,2-dichloroethylene-contaminated groundwater by methane-utilizing bacteria
-
Arai K., Tsubone T., Takechi T., Inoue T. Bioremediation of trichloroethylene and cis-1,2-dichloroethylene-contaminated groundwater by methane-utilizing bacteria. J Vet Med Sci 1999, 61:861-863.
-
(1999)
J Vet Med Sci
, vol.61
, pp. 861-863
-
-
Arai, K.1
Tsubone, T.2
Takechi, T.3
Inoue, T.4
-
5
-
-
0036299808
-
Family shuffling of a targeted bphA region to engineer biphenyl dioxygenase
-
Barriault D., Plante M.M., Sylvestre M. Family shuffling of a targeted bphA region to engineer biphenyl dioxygenase. J Bacteriol 2002, 184:3794-3800.
-
(2002)
J Bacteriol
, vol.184
, pp. 3794-3800
-
-
Barriault, D.1
Plante, M.M.2
Sylvestre, M.3
-
6
-
-
77954398650
-
Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
-
Bastida F., Rosell M., Franchini A.G., Seifert J., Finsterbusch S., Jehmlich N., et al. Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach. FEMS Microbiol Ecol 2010, 73:370-384.
-
(2010)
FEMS Microbiol Ecol
, vol.73
, pp. 370-384
-
-
Bastida, F.1
Rosell, M.2
Franchini, A.G.3
Seifert, J.4
Finsterbusch, S.5
Jehmlich, N.6
-
7
-
-
79960171702
-
Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies
-
Bastida F., Jechalke S., Bombach P., Franchini A.G., Seifert J., von Bergen M., et al. Assimilation of benzene carbon through multiple trophic levels traced by different stable isotope probing methodologies. FEMS Microbiol Ecol 2011, 77:357-369.
-
(2011)
FEMS Microbiol Ecol
, vol.77
, pp. 357-369
-
-
Bastida, F.1
Jechalke, S.2
Bombach, P.3
Franchini, A.G.4
Seifert, J.5
von Bergen, M.6
-
8
-
-
44249104008
-
Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS
-
Behrens S., Losekann T., Pett-Ridge J., Weber P.K., Ng W.O., Stevenson B.S., et al. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Appl Environ Microbiol 2008, 74:3143-3150.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3143-3150
-
-
Behrens, S.1
Losekann, T.2
Pett-Ridge, J.3
Weber, P.K.4
Ng, W.O.5
Stevenson, B.S.6
-
10
-
-
0344152353
-
The role of root exudates and allelochemicals in the rhizosphere
-
Bertin C., Yang X.H., Weston L.A. The role of root exudates and allelochemicals in the rhizosphere. Plant Soil 2003, 256:67-83.
-
(2003)
Plant Soil
, vol.256
, pp. 67-83
-
-
Bertin, C.1
Yang, X.H.2
Weston, L.A.3
-
11
-
-
40249095175
-
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology
-
Binga E.K., Lasken R.S., Neufeld J.D. Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. ISME J 2008, 2:233-241.
-
(2008)
ISME J
, vol.2
, pp. 233-241
-
-
Binga, E.K.1
Lasken, R.S.2
Neufeld, J.D.3
-
12
-
-
84859756155
-
On the use of stable isotopes in trophic ecology
-
Boecklen W.J., Yarnes C.T., Cook B.A., James A.C. On the use of stable isotopes in trophic ecology. Annu Rev Ecol Evol Syst 2011, 42:411-440.
-
(2011)
Annu Rev Ecol Evol Syst
, vol.42
, pp. 411-440
-
-
Boecklen, W.J.1
Yarnes, C.T.2
Cook, B.A.3
James, A.C.4
-
13
-
-
72949090817
-
Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques
-
Bombach P., Chatzinotas A., Neu T.R., Kästner M., Lueders T., Vogt C. Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques. FEMS Microbiol Ecol 2010, 71:237-246.
-
(2010)
FEMS Microbiol Ecol
, vol.71
, pp. 237-246
-
-
Bombach, P.1
Chatzinotas, A.2
Neu, T.R.3
Kästner, M.4
Lueders, T.5
Vogt, C.6
-
15
-
-
84867325959
-
Field applicability of Compound-Specific Isotope Analysis (CSIA) for characterization and quantification of in situ contaminant degradation in aquifers
-
Braeckevelt M., Fischer A., Kaestner M. Field applicability of Compound-Specific Isotope Analysis (CSIA) for characterization and quantification of in situ contaminant degradation in aquifers. Appl Microbiol Biotechnol 2012, 94:1401-1421.
-
(2012)
Appl Microbiol Biotechnol
, vol.94
, pp. 1401-1421
-
-
Braeckevelt, M.1
Fischer, A.2
Kaestner, M.3
-
16
-
-
0037029968
-
Towards a global historical emission inventory for selected PCB congeners - a mass balance approach. 1. Global production and consumption
-
Breivik K., Sweetman A., Pacyna J.M., Jones K.C. Towards a global historical emission inventory for selected PCB congeners - a mass balance approach. 1. Global production and consumption. Sci Total Environ 2002, 290:181-198.
-
(2002)
Sci Total Environ
, vol.290
, pp. 181-198
-
-
Breivik, K.1
Sweetman, A.2
Pacyna, J.M.3
Jones, K.C.4
-
17
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
Brodie E.L., Desantis T.Z., Joyner D.C., Baek S.M., Larsen J.T., Andersen G.L., et al. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 2006, 72:6288-6298.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6288-6298
-
-
Brodie, E.L.1
Desantis, T.Z.2
Joyner, D.C.3
Baek, S.M.4
Larsen, J.T.5
Andersen, G.L.6
-
20
-
-
77950859287
-
When metagenomics meets stable-isotope probing: progress and perspectives
-
Chen Y., Murrell J.C. When metagenomics meets stable-isotope probing: progress and perspectives. Trends Microbiol 2010, 18:157-163.
-
(2010)
Trends Microbiol
, vol.18
, pp. 157-163
-
-
Chen, Y.1
Murrell, J.C.2
-
21
-
-
51649084234
-
Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands
-
Chen Y., Dumont M.G., Neufeld J.D., Bodrossy L., Stralis-Pavese N., McNamara N.P., et al. Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands. Environ Microbiol 2008, 10:2609-2622.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2609-2622
-
-
Chen, Y.1
Dumont, M.G.2
Neufeld, J.D.3
Bodrossy, L.4
Stralis-Pavese, N.5
McNamara, N.P.6
-
22
-
-
19144366982
-
The metagenomics of soil
-
Daniel R. The metagenomics of soil. Nat Rev Microbiol 2005, 3:470-478.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 470-478
-
-
Daniel, R.1
-
23
-
-
80052812650
-
PCR amplification-independent methods for detection of microbial communities by the high-density microarray phylochip
-
DeAngelis K.M., Wu C.H., Beller H.R., Brodie E.L., Chakraborty R., DeSantis T.Z., et al. PCR amplification-independent methods for detection of microbial communities by the high-density microarray phylochip. Appl Environ Microbiol 2011, 77:6313-6322.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 6313-6322
-
-
DeAngelis, K.M.1
Wu, C.H.2
Beller, H.R.3
Brodie, E.L.4
Chakraborty, R.5
DeSantis, T.Z.6
-
24
-
-
29144520930
-
Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community
-
DeRito C.M., Pumphrey G.M., Madsen E.L. Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community. Appl Environ Microbiol 2005, 71:7858-7865.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7858-7865
-
-
DeRito, C.M.1
Pumphrey, G.M.2
Madsen, E.L.3
-
25
-
-
16544381551
-
Bacterial degradation of aromatic pollutants: a paradigm of metabolic versatility
-
Diaz E. Bacterial degradation of aromatic pollutants: a paradigm of metabolic versatility. Int Microbiol 2004, 7:173-180.
-
(2004)
Int Microbiol
, vol.7
, pp. 173-180
-
-
Diaz, E.1
-
26
-
-
19144372182
-
Stable isotope probing - linking microbial identity to function
-
Dumont M.G., Murrell J.C. Stable isotope probing - linking microbial identity to function. Nat Rev Microbiol 2005, 3:499-504.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 499-504
-
-
Dumont, M.G.1
Murrell, J.C.2
-
27
-
-
33745134375
-
Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis
-
Dumont M.G., Radajewski S.M., Miguez C.B., McDonald I.R., Murrell J.C. Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis. Environ Microbiol 2006, 8:1240-1250.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1240-1250
-
-
Dumont, M.G.1
Radajewski, S.M.2
Miguez, C.B.3
McDonald, I.R.4
Murrell, J.C.5
-
28
-
-
79955015975
-
DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment
-
Dumont M.G., Pommerenke B., Casper P., Conrad R. DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment. Environ Microbiol 2011, 13:1153-1167.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1153-1167
-
-
Dumont, M.G.1
Pommerenke, B.2
Casper, P.3
Conrad, R.4
-
29
-
-
80055105058
-
DNA stable-isotope probing (DNA-SIP)
-
Dunford E.A., Neufeld J.D. DNA stable-isotope probing (DNA-SIP). J Vis Exp 2010, 42:2027.
-
(2010)
J Vis Exp
, vol.42
, pp. 2027
-
-
Dunford, E.A.1
Neufeld, J.D.2
-
30
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards R.A., Rodriguez-Brito B., Wegley L., Haynes M., Breitbart M., Peterson D.M., et al. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 2006, 7.
-
(2006)
BMC Genomics
, vol.7
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
-
31
-
-
0027368828
-
Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene
-
Erickson B.D., Mondello F.J. Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene. Appl Environ Microbiol 1993, 59:3858-3862.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3858-3862
-
-
Erickson, B.D.1
Mondello, F.J.2
-
32
-
-
84855924760
-
Measuring unbiased metatranscriptomics in suboxic waters of the central Baltic Sea using a new in situ fixation system
-
Feike J., Jurgens K., Hollibaugh J.T., Kruger S., Jost G., Labrenz M. Measuring unbiased metatranscriptomics in suboxic waters of the central Baltic Sea using a new in situ fixation system. ISME J 2012, 6:461-470.
-
(2012)
ISME J
, vol.6
, pp. 461-470
-
-
Feike, J.1
Jurgens, K.2
Hollibaugh, J.T.3
Kruger, S.4
Jost, G.5
Labrenz, M.6
-
33
-
-
80053929391
-
Progress in prokaryotic transcriptomics
-
Filiatrault M.J. Progress in prokaryotic transcriptomics. Curr Opin Microbiol 2011, 14:579-586.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 579-586
-
-
Filiatrault, M.J.1
-
34
-
-
31944434504
-
Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes
-
Friedrich M.W. Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes. Curr Opin Biotechnol 2006, 17:59-66.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 59-66
-
-
Friedrich, M.W.1
-
35
-
-
41349099621
-
Biochemical and genetic bases of dehalorespiration
-
Futagami T., Goto M., Furukawa K. Biochemical and genetic bases of dehalorespiration. Chem Rec 2008, 8:1-12.
-
(2008)
Chem Rec
, vol.8
, pp. 1-12
-
-
Futagami, T.1
Goto, M.2
Furukawa, K.3
-
37
-
-
77749261551
-
Metals, minerals and microbes: geomicrobiology and bioremediation
-
Geoffrey M.G. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology 2010, 156:609-643.
-
(2010)
Microbiology
, vol.156
, pp. 609-643
-
-
Geoffrey, M.G.1
-
38
-
-
55749084193
-
Phytoremediation and rhizoremediation of organic soil contaminants: potential and challenges
-
Gerhardt K.E., Huang X.D., Glick B.R., Greenberg B.M. Phytoremediation and rhizoremediation of organic soil contaminants: potential and challenges. Plant Sci 2009, 176:20-30.
-
(2009)
Plant Sci
, vol.176
, pp. 20-30
-
-
Gerhardt, K.E.1
Huang, X.D.2
Glick, B.R.3
Greenberg, B.M.4
-
39
-
-
77953025003
-
An appraisal of methods for linking environmental processes to specific microbial taxa
-
Gutierrez-Zamora M.L., Manefield M. An appraisal of methods for linking environmental processes to specific microbial taxa. Rev Environ Sci Biotechnol 2010, 9:153-185.
-
(2010)
Rev Environ Sci Biotechnol
, vol.9
, pp. 153-185
-
-
Gutierrez-Zamora, M.L.1
Manefield, M.2
-
40
-
-
0032192790
-
Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products
-
Handelsman J., Rondon M.R., Brady S.F., Clardy J., Goodman R.M. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol 1998, 5:R245-R249.
-
(1998)
Chem Biol
, vol.5
-
-
Handelsman, J.1
Rondon, M.R.2
Brady, S.F.3
Clardy, J.4
Goodman, R.M.5
-
41
-
-
35348926028
-
Quantitative assessment of protein function prediction from metagenomics shotgun sequences
-
Harrington E.D., Singh A.H., Doerks T., Letunic I., von Mering C., Jensen L.J., et al. Quantitative assessment of protein function prediction from metagenomics shotgun sequences. Proc Natl Acad Sci U S A 2007, 104:13913-13918.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13913-13918
-
-
Harrington, E.D.1
Singh, A.H.2
Doerks, T.3
Letunic, I.4
von Mering, C.5
Jensen, L.J.6
-
42
-
-
77956299931
-
Deep-sea oil plume enriches indigenous oil-degrading bacteria
-
Hazen T.C., Dubinsky E.A., DeSantis T.Z., Andersen G.L., Piceno Y.M., Singh N., et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 2010, 330:204-208.
-
(2010)
Science
, vol.330
, pp. 204-208
-
-
Hazen, T.C.1
Dubinsky, E.A.2
DeSantis, T.Z.3
Andersen, G.L.4
Piceno, Y.M.5
Singh, N.6
-
43
-
-
34248159046
-
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
He Z., Gentry T.J., Schadt C.W., Wu L., Liebich J., Chong S.C., et al. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 2007, 1:67-77.
-
(2007)
ISME J
, vol.1
, pp. 67-77
-
-
He, Z.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.4
Liebich, J.5
Chong, S.C.6
-
44
-
-
77956094278
-
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
-
He Z., Deng Y., Van Nostrand J.D., Tu Q., Xu M., Hemme C.L., et al. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 2010, 4:1167-1179.
-
(2010)
ISME J
, vol.4
, pp. 1167-1179
-
-
He, Z.1
Deng, Y.2
Van Nostrand, J.D.3
Tu, Q.4
Xu, M.5
Hemme, C.L.6
-
45
-
-
48349129552
-
Method for measuring substrate preferences by individual members of microbial consortia proposed for bioaugmentation
-
Hesselsoe M., Bjerring M.L., Henriksen K., Loll P., Nielsen J.L. Method for measuring substrate preferences by individual members of microbial consortia proposed for bioaugmentation. Biodegradation 2008, 19:621-633.
-
(2008)
Biodegradation
, vol.19
, pp. 621-633
-
-
Hesselsoe, M.1
Bjerring, M.L.2
Henriksen, K.3
Loll, P.4
Nielsen, J.L.5
-
46
-
-
34249950990
-
Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function
-
Huang W.E., Stoecker K., Griffiths R., Newbold L., Daims H., Whiteley A.S., et al. Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function. Environ Microbiol 2007, 9:1878-1889.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1878-1889
-
-
Huang, W.E.1
Stoecker, K.2
Griffiths, R.3
Newbold, L.4
Daims, H.5
Whiteley, A.S.6
-
47
-
-
58149354855
-
Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell Raman-fluorescence in situ hybridization
-
Huang W.E., Ferguson A., Singer A.C., Lawson K., Thompson I.P., Kalin R.M., et al. Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell Raman-fluorescence in situ hybridization. Appl Environ Microbiol 2009, 75:234-241.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 234-241
-
-
Huang, W.E.1
Ferguson, A.2
Singer, A.C.3
Lawson, K.4
Thompson, I.P.5
Kalin, R.M.6
-
48
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse S.M., Welch D.M., Morrison H.G., Sogin M.L. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 2010, 12:1889-1898.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
49
-
-
84873420952
-
Gene-targeted metagenomics (GT metagenomics) to explore the extensive diversity of genes of interest in microbial communities
-
John Wiley & Sons, Inc.
-
Iwai S., Chai B., Jesus EdC, Penton C.R., Lee T.K., Cole J.R., et al. Gene-targeted metagenomics (GT metagenomics) to explore the extensive diversity of genes of interest in microbial communities. Handbook of molecular microbial ecology I 2011, 235-243. John Wiley & Sons, Inc.
-
(2011)
Handbook of molecular microbial ecology I
, pp. 235-243
-
-
Iwai, S.1
Chai, B.2
Jesus, E.3
Penton, C.R.4
Lee, T.K.5
Cole, J.R.6
-
50
-
-
53049085850
-
Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (protein-SIP)
-
Jehmlich N., Schmidt F., Hartwich M., von Bergen M., Richnow H.H., Vogt C. Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (protein-SIP). Rapid Commun Mass Spectrom 2008, 22:2889-2897.
-
(2008)
Rapid Commun Mass Spectrom
, vol.22
, pp. 2889-2897
-
-
Jehmlich, N.1
Schmidt, F.2
Hartwich, M.3
von Bergen, M.4
Richnow, H.H.5
Vogt, C.6
-
51
-
-
55549089274
-
Protein-based stable isotope probing (protein-SIP) reveals active species within anoxic mixed cultures
-
Jehmlich N., Schmidt F., von Bergen M., Richnow H.H., Vogt C. Protein-based stable isotope probing (protein-SIP) reveals active species within anoxic mixed cultures. ISME J 2008, 2:1122-1133.
-
(2008)
ISME J
, vol.2
, pp. 1122-1133
-
-
Jehmlich, N.1
Schmidt, F.2
von Bergen, M.3
Richnow, H.H.4
Vogt, C.5
-
52
-
-
67149131864
-
Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (protein-SIP) experiments
-
Jehmlich N., Schmidt F., Taubert M., Seifert J., von Bergen M., Richnow H.H., et al. Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (protein-SIP) experiments. Rapid Commun Mass Spectrom 2009, 23:1871-1878.
-
(2009)
Rapid Commun Mass Spectrom
, vol.23
, pp. 1871-1878
-
-
Jehmlich, N.1
Schmidt, F.2
Taubert, M.3
Seifert, J.4
von Bergen, M.5
Richnow, H.H.6
-
53
-
-
34247139729
-
In situ bioremediation
-
Jørgensen K.S. In situ bioremediation. Adv Appl Microbiol 2007, 61:285-305.
-
(2007)
Adv Appl Microbiol
, vol.61
, pp. 285-305
-
-
Jørgensen, K.S.1
-
54
-
-
51349161191
-
High-resolution metagenomics targets specific functional types in complex microbial communities
-
Kalyuzhnaya M.G., Lapidus A., Ivanova N., Copeland A.C., McHardy A.C., Szeto E., et al. High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol 2008, 26:1029-1034.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1029-1034
-
-
Kalyuzhnaya, M.G.1
Lapidus, A.2
Ivanova, N.3
Copeland, A.C.4
McHardy, A.C.5
Szeto, E.6
-
55
-
-
33947129628
-
Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1
-
Kane S.R., Chakicherla A.Y., Chain P.S., Schmidt R., Shin M.W., Legler T.C., et al. Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. J Bacteriol 2007, 189:1931-1945.
-
(2007)
J Bacteriol
, vol.189
, pp. 1931-1945
-
-
Kane, S.R.1
Chakicherla, A.Y.2
Chain, P.S.3
Schmidt, R.4
Shin, M.W.5
Legler, T.C.6
-
56
-
-
1642567940
-
Rhizoremediation: a beneficial plant-microbe interaction
-
Kuiper I., Lagendijk E.L., Bloemberg G.V., Lugtenberg B.J. Rhizoremediation: a beneficial plant-microbe interaction. Mol Plant Microbe Interact 2004, 17:6-15.
-
(2004)
Mol Plant Microbe Interact
, vol.17
, pp. 6-15
-
-
Kuiper, I.1
Lagendijk, E.L.2
Bloemberg, G.V.3
Lugtenberg, B.J.4
-
57
-
-
73349110099
-
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V., Engelbrektson A., Ochman H., Hugenholtz P. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 2010, 12:118-123.
-
(2010)
Environ Microbiol
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
58
-
-
33846056558
-
The future of single-cell environmental microbiology
-
Kuypers M.M.M., Jørgensen B.B. The future of single-cell environmental microbiology. Environ Microbiol 2007, 9:6-7.
-
(2007)
Environ Microbiol
, vol.9
, pp. 6-7
-
-
Kuypers, M.M.M.1
Jørgensen, B.B.2
-
59
-
-
0032986790
-
Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology
-
Lee N., Nielsen P.H., Andreasen K.H., Juretschko S., Nielsen J.L., Schleifer K.H., et al. Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl Environ Microbiol 1999, 65:1289-1297.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1289-1297
-
-
Lee, N.1
Nielsen, P.H.2
Andreasen, K.H.3
Juretschko, S.4
Nielsen, J.L.5
Schleifer, K.H.6
-
60
-
-
79958260979
-
Novel biphenyl-oxidizing bacteria and dioxygenase genes from a Korean tidal mudflat
-
Lee T.K., Lee J., Sul W.J., Iwai S., Chai B.C., Tiedje J.M., et al. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a Korean tidal mudflat. Appl Environ Microbiol 2011, 77:3888-3891.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 3888-3891
-
-
Lee, T.K.1
Lee, J.2
Sul, W.J.3
Iwai, S.4
Chai, B.C.5
Tiedje, J.M.6
-
61
-
-
0036534396
-
Root turnover: an important source of microbial substrates in rhizosphere remediation of recalcitrant contaminants
-
Leigh M.B., Fletcher J.S., Fu X., Schmitz F.J. Root turnover: an important source of microbial substrates in rhizosphere remediation of recalcitrant contaminants. Environ Sci Technol 2002, 36:1579-1583.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 1579-1583
-
-
Leigh, M.B.1
Fletcher, J.S.2
Fu, X.3
Schmitz, F.J.4
-
62
-
-
33646086019
-
Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated site
-
Leigh M.B., Prouzová P., Macková M., Macek T., Nagle D.P., Fletcher J.S. Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated site. Appl Environ Microbiol 2006, 72:2331-2342.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 2331-2342
-
-
Leigh, M.B.1
Prouzová, P.2
Macková, M.3
Macek, T.4
Nagle, D.P.5
Fletcher, J.S.6
-
63
-
-
34249939326
-
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs)
-
Leigh M.B., Pellizari V.H., Uhlík O., Sutka R., Rodrigues J., Ostrom N.E., et al. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 2007, 1:134-148.
-
(2007)
ISME J
, vol.1
, pp. 134-148
-
-
Leigh, M.B.1
Pellizari, V.H.2
Uhlík, O.3
Sutka, R.4
Rodrigues, J.5
Ostrom, N.E.6
-
64
-
-
38549118279
-
Simultaneous analysis of microbial identity and function using NanoSIMS
-
Li T., Wu T.D., Mazeas L., Toffin L., Guerquin-Kern J.L., Leblon G., et al. Simultaneous analysis of microbial identity and function using NanoSIMS. Environ Microbiol 2008, 10:580-588.
-
(2008)
Environ Microbiol
, vol.10
, pp. 580-588
-
-
Li, T.1
Wu, T.D.2
Mazeas, L.3
Toffin, L.4
Guerquin-Kern, J.L.5
Leblon, G.6
-
65
-
-
58149226417
-
Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment
-
Liou J.S., DeRito C.M., Madsen E.L. Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment. Environ Microbiol 2008, 10:1964-1977.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1964-1977
-
-
Liou, J.S.1
DeRito, C.M.2
Madsen, E.L.3
-
66
-
-
0023907532
-
Trichloroethylene biodegradation by a methane-oxidizing bacterium
-
Little C.D., Palumbo A.V., Herbes S.E., Lidstrom M.E., Tyndall R.L., Gilmer P.J. Trichloroethylene biodegradation by a methane-oxidizing bacterium. Appl Environ Microbiol 1988, 54:951-956.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 951-956
-
-
Little, C.D.1
Palumbo, A.V.2
Herbes, S.E.3
Lidstrom, M.E.4
Tyndall, R.L.5
Gilmer, P.J.6
-
67
-
-
0027306070
-
Ecology and evolution of microbial populations for bioremediation
-
Liu S., Suflita J.M. Ecology and evolution of microbial populations for bioremediation. Trends Biotechnol 1993, 11:344-352.
-
(1993)
Trends Biotechnol
, vol.11
, pp. 344-352
-
-
Liu, S.1
Suflita, J.M.2
-
68
-
-
2142763872
-
Cleaning up with genomics: applying molecular biology to bioremediation
-
Lovley D.R. Cleaning up with genomics: applying molecular biology to bioremediation. Nat Rev Microbiol 2003, 1:35-44.
-
(2003)
Nat Rev Microbiol
, vol.1
, pp. 35-44
-
-
Lovley, D.R.1
-
69
-
-
44849128805
-
Species divergence and the measurement of microbial diversity
-
Lozupone C.A., Knight R. Species divergence and the measurement of microbial diversity. FEMS Microbiol Rev 2008, 32:557-578.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 557-578
-
-
Lozupone, C.A.1
Knight, R.2
-
70
-
-
84855964551
-
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
-
Lu Z.M., Deng Y., Van Nostrand J.D., He Z.L., Voordeckers J., Zhou A.F., et al. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. ISME J 2012, 6:451-460.
-
(2012)
ISME J
, vol.6
, pp. 451-460
-
-
Lu, Z.M.1
Deng, Y.2
Van Nostrand, J.D.3
He, Z.L.4
Voordeckers, J.5
Zhou, A.F.6
-
71
-
-
33747348104
-
Identification of bacterial micropredators distinctively active in a soil microbial food web
-
Lueders T., Kindler R., Miltner A., Friedrich M.W., Kaestner M. Identification of bacterial micropredators distinctively active in a soil microbial food web. Appl Environ Microbiol 2006, 72:5342-5348.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5342-5348
-
-
Lueders, T.1
Kindler, R.2
Miltner, A.3
Friedrich, M.W.4
Kaestner, M.5
-
72
-
-
0034163589
-
Exploitation of plants for the removal of organics in environmental remediation
-
Macek T., Macková M., Káš J. Exploitation of plants for the removal of organics in environmental remediation. Biotechnol Adv 2000, 18:23-34.
-
(2000)
Biotechnol Adv
, vol.18
, pp. 23-34
-
-
Macek, T.1
Macková, M.2
Káš, J.3
-
73
-
-
39149102827
-
Novel roles for genetically modified plants in environmental protection
-
Macek T., Kotrba P., Svatoš A., Nováková M., Demnerová K., Macková M. Novel roles for genetically modified plants in environmental protection. Trends Biotechnol 2008, 26:146-152.
-
(2008)
Trends Biotechnol
, vol.26
, pp. 146-152
-
-
Macek, T.1
Kotrba, P.2
Svatoš, A.3
Nováková, M.4
Demnerová, K.5
Macková, M.6
-
74
-
-
70349946802
-
Advances in phytoremediation and rhizoremediation
-
Springer, Berlin, Germany, A. Varma (Ed.)
-
Macek T., Uhlík O., Ječná K., Nováková M., Lovecká P., Rezek J., et al. Advances in phytoremediation and rhizoremediation. Soil biology 2009, 257-277. Springer, Berlin, Germany. 17th ed. A. Varma (Ed.).
-
(2009)
Soil biology
, pp. 257-277
-
-
Macek, T.1
Uhlík, O.2
Ječná, K.3
Nováková, M.4
Lovecká, P.5
Rezek, J.6
-
75
-
-
0036048586
-
Isolation of small-subunit rRNA for stable isotopic characterization
-
MacGregor B.J., Bruchert V., Fleischer S., Amann R. Isolation of small-subunit rRNA for stable isotopic characterization. Environ Microbiol 2002, 4:451-464.
-
(2002)
Environ Microbiol
, vol.4
, pp. 451-464
-
-
MacGregor, B.J.1
Bruchert, V.2
Fleischer, S.3
Amann, R.4
-
77
-
-
35448989148
-
Phytoremediation and rhizoremediation
-
Springer, Dordrecht, Netherlands
-
Macková M., Dowling D., Macek T. Phytoremediation and rhizoremediation. Theoretical background. Focus on biotechnology 2006, 300. Springer, Dordrecht, Netherlands.
-
(2006)
Theoretical background. Focus on biotechnology
, pp. 300
-
-
Macková, M.1
Dowling, D.2
Macek, T.3
-
78
-
-
31944439463
-
The use of stable isotope probing techniques in bioreactor and field studies on bioremediation
-
Madsen E.L. The use of stable isotope probing techniques in bioreactor and field studies on bioremediation. Curr Opin Biotechnol 2006, 17:92-97.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 92-97
-
-
Madsen, E.L.1
-
79
-
-
84863773891
-
Stable isotope probing techniques and bioremediation
-
ASM Press, Washington, DC, J.C. Murrell, A. Whiteley (Eds.)
-
Madsen E.L. Stable isotope probing techniques and bioremediation. Stable isotope probing and related technologies 2010, 165-202. ASM Press, Washington, DC. J.C. Murrell, A. Whiteley (Eds.).
-
(2010)
Stable isotope probing and related technologies
, pp. 165-202
-
-
Madsen, E.L.1
-
80
-
-
23944499102
-
Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil
-
Mahmood S., Paton G.I., Prosser J.I. Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil. Environ Microbiol 2005, 7:1349-1360.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1349-1360
-
-
Mahmood, S.1
Paton, G.I.2
Prosser, J.I.3
-
81
-
-
0036840287
-
RNA stable isotope probing, a novel means of linking microbial community function to phylogeny
-
Manefield M., Whiteley A.S., Griffiths R.I., Bailey M.J. RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol 2002, 68:5367-5373.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5367-5373
-
-
Manefield, M.1
Whiteley, A.S.2
Griffiths, R.I.3
Bailey, M.J.4
-
83
-
-
84857134530
-
Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
-
Marchetti A., Schruth D.M., Durkin C.A., Parker M.S., Kodner R.B., Berthiaume C.T., et al. Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability. Proc Natl Acad Sci U S A 2012, 109:E317-E325.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
-
-
Marchetti, A.1
Schruth, D.M.2
Durkin, C.A.3
Parker, M.S.4
Kodner, R.B.5
Berthiaume, C.T.6
-
84
-
-
84858049721
-
Stable isotope switching (SIS): a new stable isotope probing (SIP) approach to determine carbon flow in the soil food web and dynamics in organic matter pools
-
Maxfield P.J., Dildar N., Hornibrook E.R.C., Stott A.W., Evershed R.P. Stable isotope switching (SIS): a new stable isotope probing (SIP) approach to determine carbon flow in the soil food web and dynamics in organic matter pools. Rapid Commun Mass Spectrom 2012, 26:997-1004.
-
(2012)
Rapid Commun Mass Spectrom
, vol.26
, pp. 997-1004
-
-
Maxfield, P.J.1
Dildar, N.2
Hornibrook, E.R.C.3
Stott, A.W.4
Evershed, R.P.5
-
85
-
-
69449095510
-
Plant-associated bacterial degradation of toxic organic compounds in soil
-
McGuinness M., Dowling D. Plant-associated bacterial degradation of toxic organic compounds in soil. Int J Environ Res Public Health 2009, 6:2226-2247.
-
(2009)
Int J Environ Res Public Health
, vol.6
, pp. 2226-2247
-
-
McGuinness, M.1
Dowling, D.2
-
86
-
-
67651251807
-
Linking microbial community function to phylogeny of sulfate-reducing Deltaproteobacteria in marine sediments by combining stable isotope probing with magnetic-bead capture hybridization of 16S rRNA
-
Miyatake T., MacGregor B.J., Boschker H.T. Linking microbial community function to phylogeny of sulfate-reducing Deltaproteobacteria in marine sediments by combining stable isotope probing with magnetic-bead capture hybridization of 16S rRNA. Appl Environ Microbiol 2009, 75:4927-4935.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4927-4935
-
-
Miyatake, T.1
MacGregor, B.J.2
Boschker, H.T.3
-
87
-
-
0030752851
-
Identification and modification of biphenyl dioxygenase sequences that determine the specificity of polychlorinated biphenyl degradation
-
Mondello F.J., Turcich M.P., Lobos J.H., Erickson B.D. Identification and modification of biphenyl dioxygenase sequences that determine the specificity of polychlorinated biphenyl degradation. Appl Environ Microbiol 1997, 63:3096-3103.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3096-3103
-
-
Mondello, F.J.1
Turcich, M.P.2
Lobos, J.H.3
Erickson, B.D.4
-
88
-
-
78650008729
-
Linking bacterial identities and ecosystem processes: can 'omic' analyses be more than the sum of their parts?
-
Morales S.E., Holben W.E. Linking bacterial identities and ecosystem processes: can 'omic' analyses be more than the sum of their parts?. FEMS Microbiol Ecol 2011, 75:2-16.
-
(2011)
FEMS Microbiol Ecol
, vol.75
, pp. 2-16
-
-
Morales, S.E.1
Holben, W.E.2
-
89
-
-
84859812807
-
Metatranscriptomic signature of exogenous polyamine utilization by coastal bacterioplankton
-
Mou X.Z., Vila-Costa M., Sun S.L., Zhao W.D., Sharma S., Moran M.A. Metatranscriptomic signature of exogenous polyamine utilization by coastal bacterioplankton. Environ Microbiol Rep 2011, 3:798-806.
-
(2011)
Environ Microbiol Rep
, vol.3
, pp. 798-806
-
-
Mou, X.Z.1
Vila-Costa, M.2
Sun, S.L.3
Zhao, W.D.4
Sharma, S.5
Moran, M.A.6
-
90
-
-
1542344986
-
Natural attenuation of contaminated soils
-
Mulligan C.N., Yong R.N. Natural attenuation of contaminated soils. Environ Int 2004, 30:587-601.
-
(2004)
Environ Int
, vol.30
, pp. 587-601
-
-
Mulligan, C.N.1
Yong, R.N.2
-
91
-
-
33744762131
-
Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria
-
Nakatsu C.H., Hristova K., Hanada S., Meng X.Y., Hanson J.R., Scow K.M., et al. Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria. Int J Syst Evol Microbiol 2006, 56:983-989.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 983-989
-
-
Nakatsu, C.H.1
Hristova, K.2
Hanada, S.3
Meng, X.Y.4
Hanson, J.R.5
Scow, K.M.6
-
92
-
-
34248137874
-
Methodological considerations for the use of stable isotope probing in microbial ecology
-
Neufeld J.D., Dumont M.G., Vohra J., Murrell J.C. Methodological considerations for the use of stable isotope probing in microbial ecology. Microb Ecol 2007, 53:435-442.
-
(2007)
Microb Ecol
, vol.53
, pp. 435-442
-
-
Neufeld, J.D.1
Dumont, M.G.2
Vohra, J.3
Murrell, J.C.4
-
93
-
-
34248577608
-
DNA stable-isotope probing
-
Neufeld J.D., Vohra J., Dumont M.G., Lueders T., Manefield M., Friedrich M.W., et al. DNA stable-isotope probing. Nat Protoc 2007, 2:860-866.
-
(2007)
Nat Protoc
, vol.2
, pp. 860-866
-
-
Neufeld, J.D.1
Vohra, J.2
Dumont, M.G.3
Lueders, T.4
Manefield, M.5
Friedrich, M.W.6
-
94
-
-
34249948237
-
Who eats what, where and when? Isotope-labelling experiments are coming of age
-
Neufeld J.D., Wagner M., Murrell J.C. Who eats what, where and when? Isotope-labelling experiments are coming of age. ISME J 2007, 1:103-110.
-
(2007)
ISME J
, vol.1
, pp. 103-110
-
-
Neufeld, J.D.1
Wagner, M.2
Murrell, J.C.3
-
95
-
-
40249115825
-
Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics
-
Neufeld J.D., Chen Y., Dumont M.G., Murrell J.C. Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environ Microbiol 2008, 10:1526-1535.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1526-1535
-
-
Neufeld, J.D.1
Chen, Y.2
Dumont, M.G.3
Murrell, J.C.4
-
96
-
-
11344269696
-
Bacteria and phytoremediation: new uses for endophytic bacteria in plants
-
Newman L.A., Reynolds C.M. Bacteria and phytoremediation: new uses for endophytic bacteria in plants. Trends Biotechnol 2005, 23:6-8.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 6-8
-
-
Newman, L.A.1
Reynolds, C.M.2
-
97
-
-
34547412496
-
Novel approach using substrate-mediated radiolabelling of RNA to link metabolic function with the structure of microbial communities
-
Nikolausz M., Palatinszky M.A., Rusznyak A., Richnow H.H., Kappelmeyer U., Kastner M. Novel approach using substrate-mediated radiolabelling of RNA to link metabolic function with the structure of microbial communities. FEMS Microbiol Lett 2007, 274:154-161.
-
(2007)
FEMS Microbiol Lett
, vol.274
, pp. 154-161
-
-
Nikolausz, M.1
Palatinszky, M.A.2
Rusznyak, A.3
Richnow, H.H.4
Kappelmeyer, U.5
Kastner, M.6
-
98
-
-
58149217026
-
Cloning the bacterial bphC gene into Nicotiana tabacum to improve the efficiency of PCB phytoremediation
-
Nováková M., Macková M., Chrastilová Z., Viktorová J., Szekeres M., Demnerová K., et al. Cloning the bacterial bphC gene into Nicotiana tabacum to improve the efficiency of PCB phytoremediation. Biotechnol Bioeng 2009, 102:29-37.
-
(2009)
Biotechnol Bioeng
, vol.102
, pp. 29-37
-
-
Nováková, M.1
Macková, M.2
Chrastilová, Z.3
Viktorová, J.4
Szekeres, M.5
Demnerová, K.6
-
99
-
-
0035919654
-
Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis
-
Orphan V.J., House C.H., Hinrichs K.U., McKeegan K.D., DeLong E.F. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 2001, 293:484-487.
-
(2001)
Science
, vol.293
, pp. 484-487
-
-
Orphan, V.J.1
House, C.H.2
Hinrichs, K.U.3
McKeegan, K.D.4
DeLong, E.F.5
-
100
-
-
81855170246
-
Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton
-
Ottesen E.A., Marin R., Preston C.M., Young C.R., Ryan J.P., Scholin C.A., et al. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. ISME J 2011, 5:1881-1895.
-
(2011)
ISME J
, vol.5
, pp. 1881-1895
-
-
Ottesen, E.A.1
Marin, R.2
Preston, C.M.3
Young, C.R.4
Ryan, J.P.5
Scholin, C.A.6
-
101
-
-
0002861821
-
Analyzing natural microbial populations by rRNA sequences
-
Pace N.R., Stahl D.A., Lane D.J., Olsen G.J. Analyzing natural microbial populations by rRNA sequences. ASM News 1985, 51:4-12.
-
(1985)
ASM News
, vol.51
, pp. 4-12
-
-
Pace, N.R.1
Stahl, D.A.2
Lane, D.J.3
Olsen, G.J.4
-
103
-
-
79953305843
-
Quantitative tracking of isotope flows in proteomes of microbial communities
-
Pan C.L., Fischer C.R., Hyatt D., Bowen B.P., Hettich R.L., Banfield J.F. Quantitative tracking of isotope flows in proteomes of microbial communities. Mol Cell Proteomics 2011, 10.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Pan, C.L.1
Fischer, C.R.2
Hyatt, D.3
Bowen, B.P.4
Hettich, R.L.5
Banfield, J.F.6
-
104
-
-
77953646161
-
Diversity of 16S rRNA genes within individual prokaryotic genomes
-
Pei A.Y., Oberdorf W.E., Nossa C.W., Agarwal A., Chokshi P., Gerz E.A., et al. Diversity of 16S rRNA genes within individual prokaryotic genomes. Appl Environ Microbiol 2010, 76:3886-3897.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3886-3897
-
-
Pei, A.Y.1
Oberdorf, W.E.2
Nossa, C.W.3
Agarwal, A.4
Chokshi, P.5
Gerz, E.A.6
-
105
-
-
44349119350
-
Diverse syntrophic partnerships from-deep-sea methane vents revealed by direct cell capture and metagenomics
-
Pernthaler A., Dekas A.E., Brown C.T., Goffredi S.K., Embaye T., Orphan V.J. Diverse syntrophic partnerships from-deep-sea methane vents revealed by direct cell capture and metagenomics. Proc Natl Acad Sci U S A 2008, 105:7052-7057.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 7052-7057
-
-
Pernthaler, A.1
Dekas, A.E.2
Brown, C.T.3
Goffredi, S.K.4
Embaye, T.5
Orphan, V.J.6
-
106
-
-
80052609854
-
Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP
-
Pilloni G., von Netzer F., Engel M., Lueders T. Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP. FEMS Microbiol Ecol 2011, 78:165-175.
-
(2011)
FEMS Microbiol Ecol
, vol.78
, pp. 165-175
-
-
Pilloni, G.1
von Netzer, F.2
Engel, M.3
Lueders, T.4
-
107
-
-
31944446728
-
Studying plant-microbe interactions using stable isotope technologies
-
Prosser J.I., Rangel-Castro J.I., Killham K. Studying plant-microbe interactions using stable isotope technologies. Curr Opin Biotechnol 2006, 17:98-102.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 98-102
-
-
Prosser, J.I.1
Rangel-Castro, J.I.2
Killham, K.3
-
108
-
-
46949087558
-
Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil
-
Pumphrey G.M., Madsen E.L. Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil. Appl Environ Microbiol 2008, 74:4111-4118.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4111-4118
-
-
Pumphrey, G.M.1
Madsen, E.L.2
-
109
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince C., Lanzén A., Curtis T.P., Davenport R.J., Hall N., Head I.M., et al. Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 2009, 6:639-641.
-
(2009)
Nat Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
Lanzén, A.2
Curtis, T.P.3
Davenport, R.J.4
Hall, N.5
Head, I.M.6
-
111
-
-
0034628432
-
Stable-isotope probing as a tool in microbial ecology
-
Radajewski S., Ineson P., Parekh N.R., Murrell J.C. Stable-isotope probing as a tool in microbial ecology. Nature 2000, 403:646-649.
-
(2000)
Nature
, vol.403
, pp. 646-649
-
-
Radajewski, S.1
Ineson, P.2
Parekh, N.R.3
Murrell, J.C.4
-
112
-
-
0036667422
-
Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing
-
Radajewski S., Webster G., Reay D.S., Morris S.A., Ineson P., Nedwell D.B., et al. Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing. Microbiology 2002, 148:2331-2342.
-
(2002)
Microbiology
, vol.148
, pp. 2331-2342
-
-
Radajewski, S.1
Webster, G.2
Reay, D.S.3
Morris, S.A.4
Ineson, P.5
Nedwell, D.B.6
-
113
-
-
0038482074
-
Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms
-
Radajewski S., McDonald I.R., Murrell J.C. Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms. Curr Opin Biotechnol 2003, 14:296-302.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 296-302
-
-
Radajewski, S.1
McDonald, I.R.2
Murrell, J.C.3
-
114
-
-
77956304094
-
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
-
Reeder J., Knight R. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods 2010, 7:668-669.
-
(2010)
Nat Methods
, vol.7
, pp. 668-669
-
-
Reeder, J.1
Knight, R.2
-
115
-
-
48749084779
-
Hydroxy-PCBs, methoxy-PCBs and hydroxy-methoxy-PCBs: metabolites of polychlorinated biphenyls formed in vitro by tobacco cells
-
Rezek J., Macek T., Macková M., Tříska J., Růžičková K. Hydroxy-PCBs, methoxy-PCBs and hydroxy-methoxy-PCBs: metabolites of polychlorinated biphenyls formed in vitro by tobacco cells. Environ Sci Technol 2008, 42:5746-5751.
-
(2008)
Environ Sci Technol
, vol.42
, pp. 5746-5751
-
-
Rezek, J.1
Macek, T.2
Macková, M.3
Tříska, J.4
Růžičková, K.5
-
117
-
-
84855285773
-
Bacterial community transcription patterns during a marine phytoplankton bloom
-
Rinta-Kanto J.M., Sun S.L., Sharma S., Kiene R.P., Moran M.A. Bacterial community transcription patterns during a marine phytoplankton bloom. Environ Microbiol 2012, 14:228-239.
-
(2012)
Environ Microbiol
, vol.14
, pp. 228-239
-
-
Rinta-Kanto, J.M.1
Sun, S.L.2
Sharma, S.3
Kiene, R.P.4
Moran, M.A.5
-
119
-
-
77956739561
-
The fat that matters: soil food web analysis using fatty acids and their carbon stable isotope signature
-
Ruess L., Chamberlain P.M. The fat that matters: soil food web analysis using fatty acids and their carbon stable isotope signature. Soil Biol Biochem. 2010, 42:1898-1910.
-
(2010)
Soil Biol Biochem.
, vol.42
, pp. 1898-1910
-
-
Ruess, L.1
Chamberlain, P.M.2
-
120
-
-
0037805644
-
Biotechnological prospects from metagenomics
-
Schloss P.D., Handelsman J. Biotechnological prospects from metagenomics. Curr Opin Biotechnol 2003, 14:303-310.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 303-310
-
-
Schloss, P.D.1
Handelsman, J.2
-
121
-
-
23944495106
-
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot
-
229
-
Schloss P.D., Handelsman J. Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biol 2005, 6. 229.
-
(2005)
Genome Biol
, vol.6
-
-
Schloss, P.D.1
Handelsman, J.2
-
122
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss P.D., Gevers D., Westcott S.L. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 2011, 6:e27310.
-
(2011)
PLoS One
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
123
-
-
34250639490
-
Metagenomics, biotechnology with non-culturable microbes
-
Schmeisser C., Steele H., Streit W.R. Metagenomics, biotechnology with non-culturable microbes. Appl Microbiol Biotechnol 2007, 75:955-962.
-
(2007)
Appl Microbiol Biotechnol
, vol.75
, pp. 955-962
-
-
Schmeisser, C.1
Steele, H.2
Streit, W.R.3
-
124
-
-
0028990188
-
Phytoremediation of organic and nutrient contaminants
-
Schnoor J.L., Licht L.A., Mccutcheon S.C., Wolfe N.L., Carreira L.H. Phytoremediation of organic and nutrient contaminants. Environ Sci Technol 1995, 29:A318-A323.
-
(1995)
Environ Sci Technol
, vol.29
-
-
Schnoor, J.L.1
Licht, L.A.2
Mccutcheon, S.C.3
Wolfe, N.L.4
Carreira, L.H.5
-
125
-
-
33646451050
-
Enhancement of gene detection frequencies by combining DNA-based stable-isotope probing with the construction of metagenomic DNA libraries
-
Schwarz S., Waschkowitz T., Daniel R. Enhancement of gene detection frequencies by combining DNA-based stable-isotope probing with the construction of metagenomic DNA libraries. World J Microbiol Biotechnol 2006, 22:363-367.
-
(2006)
World J Microbiol Biotechnol
, vol.22
, pp. 363-367
-
-
Schwarz, S.1
Waschkowitz, T.2
Daniel, R.3
-
126
-
-
0032751752
-
Soluble methane monooxygenase gene clusters from trichloroethylene-degrading Methylomonas sp. strains and detection of methanotrophs during in situ bioremediation
-
Shigematsu T., Hanada S., Eguchi M., Kamagata Y., Kanagawa T., Kurane R. Soluble methane monooxygenase gene clusters from trichloroethylene-degrading Methylomonas sp. strains and detection of methanotrophs during in situ bioremediation. Appl Environ Microbiol 1999, 65:5198-5206.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 5198-5206
-
-
Shigematsu, T.1
Hanada, S.2
Eguchi, M.3
Kamagata, Y.4
Kanagawa, T.5
Kurane, R.6
-
127
-
-
71349088748
-
Achievements and new knowledge unraveled by metagenomic approaches
-
Simon C., Daniel R. Achievements and new knowledge unraveled by metagenomic approaches. Appl Microbiol Biotechnol 2009, 85:265-276.
-
(2009)
Appl Microbiol Biotechnol
, vol.85
, pp. 265-276
-
-
Simon, C.1
Daniel, R.2
-
128
-
-
79953210780
-
Metagenomic analyses: past and future trends
-
Simon C., Daniel R. Metagenomic analyses: past and future trends. Appl Environ Microbiol 2011, 77:1153-1161.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1153-1161
-
-
Simon, C.1
Daniel, R.2
-
129
-
-
0242669932
-
Secondary plant metabolites in phytoremediation and biotransformation
-
Singer A.C., Crowley D.E., Thompson I.P. Secondary plant metabolites in phytoremediation and biotransformation. Trends Biotechnol 2003, 21:123-130.
-
(2003)
Trends Biotechnol
, vol.21
, pp. 123-130
-
-
Singer, A.C.1
Crowley, D.E.2
Thompson, I.P.3
-
130
-
-
2942596158
-
The tritrophic trinity: a source of pollutant-degrading enzymes and its implications for phytoremediation
-
Singer A.C., Thompson I.P., Bailey M.J. The tritrophic trinity: a source of pollutant-degrading enzymes and its implications for phytoremediation. Curr Opin Microbiol 2004, 7:239-244.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 239-244
-
-
Singer, A.C.1
Thompson, I.P.2
Bailey, M.J.3
-
131
-
-
9244251590
-
Anaerobic microbial dehalogenation
-
Smidt H., de Vos W.M. Anaerobic microbial dehalogenation. Annu Rev Microbiol 2004, 58:43-73.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 43-73
-
-
Smidt, H.1
de Vos, W.M.2
-
132
-
-
84855287323
-
Microbial metatranscriptomics in a permanent marine oxygen minimum zone
-
Stewart F.J., Ulloa O., DeLong E.F. Microbial metatranscriptomics in a permanent marine oxygen minimum zone. Environ Microbiol 2012, 14:23-40.
-
(2012)
Environ Microbiol
, vol.14
, pp. 23-40
-
-
Stewart, F.J.1
Ulloa, O.2
DeLong, E.F.3
-
133
-
-
84856373733
-
Culture-independent methods for studying environmental microorganisms: methods, application, and perspective
-
Su C., Lei L.P., Duan Y.Q., Zhang K.Q., Yang J.K. Culture-independent methods for studying environmental microorganisms: methods, application, and perspective. Appl Microbiol Biotechnol 2012, 93:993-1003.
-
(2012)
Appl Microbiol Biotechnol
, vol.93
, pp. 993-1003
-
-
Su, C.1
Lei, L.P.2
Duan, Y.Q.3
Zhang, K.Q.4
Yang, J.K.5
-
134
-
-
72649090171
-
Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis
-
Suenaga H., Koyama Y., Miyakoshi M., Miyazaki R., Yano H., Sota M., et al. Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis. ISME J 2009, 3:1335-1348.
-
(2009)
ISME J
, vol.3
, pp. 1335-1348
-
-
Suenaga, H.1
Koyama, Y.2
Miyakoshi, M.3
Miyazaki, R.4
Yano, H.5
Sota, M.6
-
135
-
-
69449083604
-
DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment
-
Sul W.J., Park J., Quensen J.F., Rodrigues J.L., Seliger L., Tsoi T.V., et al. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Appl Environ Microbiol 2009, 75:5501-5506.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5501-5506
-
-
Sul, W.J.1
Park, J.2
Quensen, J.F.3
Rodrigues, J.L.4
Seliger, L.5
Tsoi, T.V.6
-
136
-
-
65549118951
-
Transgenic plants to improve rhizoremediation of polychlorinated biphenyls (PCBs)
-
Sylvestre M., Macek T., Macková M. Transgenic plants to improve rhizoremediation of polychlorinated biphenyls (PCBs). Curr Opin Biotechnol 2009, 20:242-247.
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 242-247
-
-
Sylvestre, M.1
Macek, T.2
Macková, M.3
-
137
-
-
20544473074
-
In situ bioremediation of a cis-dichloroethylene-contaminated aquifer utilizing methane-rich groundwater from an uncontaminated aquifer
-
Takeuchi M., Nanba K., Iwamoto H., Nirei H., Kusuda T., Kazaoka O., et al. In situ bioremediation of a cis-dichloroethylene-contaminated aquifer utilizing methane-rich groundwater from an uncontaminated aquifer. Water Res 2005, 39:2438-2444.
-
(2005)
Water Res
, vol.39
, pp. 2438-2444
-
-
Takeuchi, M.1
Nanba, K.2
Iwamoto, H.3
Nirei, H.4
Kusuda, T.5
Kazaoka, O.6
-
138
-
-
79956270353
-
Time resolved protein-based stable isotope probing (protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments
-
Taubert M., Jehmlich N., Vogt C., Richnow H.H., Schmidt F., von Bergen M., et al. Time resolved protein-based stable isotope probing (protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments. Proteomics 2011, 11:2265-2274.
-
(2011)
Proteomics
, vol.11
, pp. 2265-2274
-
-
Taubert, M.1
Jehmlich, N.2
Vogt, C.3
Richnow, H.H.4
Schmidt, F.5
von Bergen, M.6
-
139
-
-
82955193864
-
Shotgun isotope array for rapid, substrate-specific detection of microorganisms in a microbial community
-
Tobino T., Kurisu F., Kasuga I., Furumai H. Shotgun isotope array for rapid, substrate-specific detection of microorganisms in a microbial community. Appl Environ Microbiol 2011, 77:7430-7432.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7430-7432
-
-
Tobino, T.1
Kurisu, F.2
Kasuga, I.3
Furumai, H.4
-
140
-
-
0027378004
-
Isolation and characterization of an N-methylcarbamate insecticide-degrading methylotrophic bacterium
-
Topp E., Hanson R.S., Ringelberg D.B., White D.C., Wheatcroft R. Isolation and characterization of an N-methylcarbamate insecticide-degrading methylotrophic bacterium. Appl Environ Microbiol 1993, 59:3339-3349.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3339-3349
-
-
Topp, E.1
Hanson, R.S.2
Ringelberg, D.B.3
White, D.C.4
Wheatcroft, R.5
-
141
-
-
0036270789
-
Microbial diversity and function in soil: from genes to ecosystems
-
Torsvik V., Øvreås L. Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 2002, 5:240-245.
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 240-245
-
-
Torsvik, V.1
Øvreås, L.2
-
142
-
-
84872010771
-
Plant exudates promote PCB degradation by a rhodococcal rhizobacteria
-
Toussaint J.-P., Pham T., Barriault D., Sylvestre M. Plant exudates promote PCB degradation by a rhodococcal rhizobacteria. Appl Microbiol Biotechnol 2012, 95:1589-1603.
-
(2012)
Appl Microbiol Biotechnol
, vol.95
, pp. 1589-1603
-
-
Toussaint, J.-P.1
Pham, T.2
Barriault, D.3
Sylvestre, M.4
-
143
-
-
65049087848
-
DNA-based stable isotope probing: a link between community structure and function
-
Uhlík O., Ječná K., Leigh M.B., Macková M., Macek T. DNA-based stable isotope probing: a link between community structure and function. Sci Total Environ 2009, 407:3611-3619.
-
(2009)
Sci Total Environ
, vol.407
, pp. 3611-3619
-
-
Uhlík, O.1
Ječná, K.2
Leigh, M.B.3
Macková, M.4
Macek, T.5
-
144
-
-
70349912423
-
Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by polychlorinated biphenyls as revealed by stable isotope probing
-
Uhlík O., Ječná K., Macková M., Vlček C., Hroudová M., Demnerová K., et al. Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by polychlorinated biphenyls as revealed by stable isotope probing. Appl Environ Microbiol 2009, 75:6471-6477.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6471-6477
-
-
Uhlík, O.1
Ječná, K.2
Macková, M.3
Vlček, C.4
Hroudová, M.5
Demnerová, K.6
-
145
-
-
84863761785
-
Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil
-
Uhlík O., Wald J., Strejček M., Musilová L., Rídl J., Hroudová M., et al. Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil. PLoS One 2012, 7:e40653.
-
(2012)
PLoS One
, vol.7
-
-
Uhlík, O.1
Wald, J.2
Strejček, M.3
Musilová, L.4
Rídl, J.5
Hroudová, M.6
-
146
-
-
0346499649
-
Biodegradation of nitro-substituted explosives 2,4,6-trinitrotoluene, hexahydro-1,3,5-trinitro-1,3,5-triazine, and octahydro-1,3,5,7-tetranitro-1,3,5-tetrazocine by a phytosymbiotic Methylobacterium sp. associated with poplar tissues (Populus deltoides×nigra DN34)
-
Van Aken B., Yoon J.M., Schnoor J.L. Biodegradation of nitro-substituted explosives 2,4,6-trinitrotoluene, hexahydro-1,3,5-trinitro-1,3,5-triazine, and octahydro-1,3,5,7-tetranitro-1,3,5-tetrazocine by a phytosymbiotic Methylobacterium sp. associated with poplar tissues (Populus deltoides×nigra DN34). Appl Environ Microbiol 2004, 70:508-517.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 508-517
-
-
Van Aken, B.1
Yoon, J.M.2
Schnoor, J.L.3
-
147
-
-
77950945207
-
Phytoremediation of polychlorinated biphenyls: new trends and promises
-
Van Aken B., Correa P.A., Schnoor J.L. Phytoremediation of polychlorinated biphenyls: new trends and promises. Environ Sci Technol 2010, 44:2767-2776.
-
(2010)
Environ Sci Technol
, vol.44
, pp. 2767-2776
-
-
Van Aken, B.1
Correa, P.A.2
Schnoor, J.L.3
-
148
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter J.C., Remington K., Heidelberg J.F., Halpern A.L., Rusch D., Eisen J.A., et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004, 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
-
149
-
-
33846585480
-
Family shuffling of soil DNA to change the regiospecificity of Burkholderia xenovorans LB400 biphenyl dioxygenase
-
Vézina J., Barriault D., Sylvestre M. Family shuffling of soil DNA to change the regiospecificity of Burkholderia xenovorans LB400 biphenyl dioxygenase. J Bacteriol 2007, 189:779-788.
-
(2007)
J Bacteriol
, vol.189
, pp. 779-788
-
-
Vézina, J.1
Barriault, D.2
Sylvestre, M.3
-
150
-
-
49449102312
-
Diversity of the C-terminal portion of the biphenyl dioxygenase large subunit
-
Vézina J., Barriault D., Sylvestre M. Diversity of the C-terminal portion of the biphenyl dioxygenase large subunit. J Mol Microbiol Biotechnol 2008, 15:139-151.
-
(2008)
J Mol Microbiol Biotechnol
, vol.15
, pp. 139-151
-
-
Vézina, J.1
Barriault, D.2
Sylvestre, M.3
-
151
-
-
57549094171
-
Metagenomics approaches in systems microbiology
-
Vieites J.M., Guazzaroni M.E., Beloqui A., Golyshin P.N., Ferrer M. Metagenomics approaches in systems microbiology. FEMS Microbiol Rev 2009, 33:236-255.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 236-255
-
-
Vieites, J.M.1
Guazzaroni, M.E.2
Beloqui, A.3
Golyshin, P.N.4
Ferrer, M.5
-
152
-
-
0038265129
-
Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes
-
Wagner M., Horn M., Daims H. Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes. Curr Opin Microbiol 2003, 6:302-309.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 302-309
-
-
Wagner, M.1
Horn, M.2
Daims, H.3
-
153
-
-
31944434615
-
Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays
-
Wagner M., Nielsen P.H., Loy A., Nielsen J.L., Daims H. Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays. Curr Opin Biotechnol 2006, 17:83-91.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 83-91
-
-
Wagner, M.1
Nielsen, P.H.2
Loy, A.3
Nielsen, J.L.4
Daims, H.5
-
154
-
-
24944501696
-
Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495
-
Warner K.L., Larkin M.J., Harper D.B., Murrell J.C., McDonald I.R. Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495. FEMS Microbiol Lett 2005, 251:45-51.
-
(2005)
FEMS Microbiol Lett
, vol.251
, pp. 45-51
-
-
Warner, K.L.1
Larkin, M.J.2
Harper, D.B.3
Murrell, J.C.4
McDonald, I.R.5
-
155
-
-
0038265142
-
Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing
-
Wellington E.M.H., Berry A., Krsek M. Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing. Curr Opin Microbiol 2003, 6:295-301.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 295-301
-
-
Wellington, E.M.H.1
Berry, A.2
Krsek, M.3
-
156
-
-
66049149852
-
Phytoremediation: plant-endophyte partnerships take the challenge
-
Weyens N., van der Lelie D., Taghavi S., Vangronsveld J. Phytoremediation: plant-endophyte partnerships take the challenge. Curr Opin Biotechnol 2009, 20:248-254.
-
(2009)
Curr Opin Biotechnol
, vol.20
, pp. 248-254
-
-
Weyens, N.1
van der Lelie, D.2
Taghavi, S.3
Vangronsveld, J.4
-
157
-
-
78751480773
-
Endophytes and their potential to deal with co-contamination of organic contaminants (toluene) and toxic metals (nickel) during phytoremediation
-
Weyens N., Truyens S., Saenen E., Boulet J., Dupae J., Taghavi S., et al. Endophytes and their potential to deal with co-contamination of organic contaminants (toluene) and toxic metals (nickel) during phytoremediation. Int J Phytoremediation 2011, 13:244-255.
-
(2011)
Int J Phytoremediation
, vol.13
, pp. 244-255
-
-
Weyens, N.1
Truyens, S.2
Saenen, E.3
Boulet, J.4
Dupae, J.5
Taghavi, S.6
-
158
-
-
31944431917
-
Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies
-
Whiteley A.S., Manefield M., Lueders T. Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies. Curr Opin Biotechnol 2006, 17:67-71.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 67-71
-
-
Whiteley, A.S.1
Manefield, M.2
Lueders, T.3
-
159
-
-
0034076911
-
Microbial reductive dehalogenation of polychlorinated biphenyls
-
Wiegel J., Wu Q. Microbial reductive dehalogenation of polychlorinated biphenyls. FEMS Microbiol Ecol 2000, 32:1-15.
-
(2000)
FEMS Microbiol Ecol
, vol.32
, pp. 1-15
-
-
Wiegel, J.1
Wu, Q.2
-
160
-
-
77957008912
-
DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment
-
Winderl C., Penning H., von Netzer F., Meckenstock R.U., Lueders T. DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment. ISME J 2010, 4:1314-1325.
-
(2010)
ISME J
, vol.4
, pp. 1314-1325
-
-
Winderl, C.1
Penning, H.2
von Netzer, F.3
Meckenstock, R.U.4
Lueders, T.5
-
162
-
-
0344874606
-
Combination of microautoradiography and fluorescence in situ hybridization for identification of microorganisms degrading xenobiotic contaminants
-
Yang Y.R., Zarda A., Zeyer J. Combination of microautoradiography and fluorescence in situ hybridization for identification of microorganisms degrading xenobiotic contaminants. Environ Toxicol Chem 2003, 22:2840-2844.
-
(2003)
Environ Toxicol Chem
, vol.22
, pp. 2840-2844
-
-
Yang, Y.R.1
Zarda, A.2
Zeyer, J.3
-
163
-
-
34250793341
-
Biostimulation of PAH degradation with plants containing high concentrations of linoleic acid
-
Yi H., Crowley D.E. Biostimulation of PAH degradation with plants containing high concentrations of linoleic acid. Environ Sci Technol 2007, 41:4382-4388.
-
(2007)
Environ Sci Technol
, vol.41
, pp. 4382-4388
-
-
Yi, H.1
Crowley, D.E.2
-
164
-
-
26844572199
-
Screening for novel enzymes from metagenome and SIGEX, as a way to improve it
-
Yun J., Ryu S. Screening for novel enzymes from metagenome and SIGEX, as a way to improve it. Microb Cell Fact 2005, 4:8.
-
(2005)
Microb Cell Fact
, vol.4
, pp. 8
-
-
Yun, J.1
Ryu, S.2
-
165
-
-
56749163378
-
Assessing bacterial diversity in soil
-
Zhang L., Xu Z. Assessing bacterial diversity in soil. J Soil Sediment 2008, 8:379-388.
-
(2008)
J Soil Sediment
, vol.8
, pp. 379-388
-
-
Zhang, L.1
Xu, Z.2
|