-
1
-
-
34248137874
-
Methodological considerations for the use of stable isotope probing in microbial ecology
-
Neufeld, J. D., Dumont, M. G., Vohra, J., Murrell, J. C., Methodological considerations for the use of stable isotope probing in microbial ecology. Microbiol. Ecol. 2007, 53, 435-442.
-
(2007)
Microbiol. Ecol.
, vol.53
, pp. 435-442
-
-
Neufeld, J.D.1
Dumont, M.G.2
Vohra, J.3
Murrell, J.C.4
-
2
-
-
19144372182
-
Stable isotope probing - linking microbial identity to function
-
Dumont, M. G., Murrell, J. C., Stable isotope probing - linking microbial identity to function. Nat. Rev. Microbiol. 2005, 3, 499-504.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 499-504
-
-
Dumont, M.G.1
Murrell, J.C.2
-
3
-
-
55549089274
-
Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
-
Jehmlich, N., Schmidt, F., von Bergen, M., Richnow, H. H., Vogt, C., Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures. ISME. J. 2008, 2, 1122-1133.
-
(2008)
ISME. J.
, vol.2
, pp. 1122-1133
-
-
Jehmlich, N.1
Schmidt, F.2
von Bergen, M.3
Richnow, H.H.4
Vogt, C.5
-
4
-
-
79956272680
-
-
German Patent Agency, no. DE 102008043241
-
Schmidt, F., Jehmlich, N., Kopinke, F. D., von Bergen, M., German Patent Agency, no. DE 102008043241, 2009.
-
(2009)
-
-
Schmidt, F.1
Jehmlich, N.2
Kopinke, F.D.3
von Bergen, M.4
-
5
-
-
0032560228
-
Direct linking of microbial populations to specific biogeochemical processes by C-13-labelling of biomarkers
-
Boschker, H. T. S., Nold, S. C., Wellsbury, P., Bos, D. et al., Direct linking of microbial populations to specific biogeochemical processes by C-13-labelling of biomarkers. Nature 1998, 392, 801-805.
-
(1998)
Nature
, vol.392
, pp. 801-805
-
-
Boschker, H.T.S.1
Nold, S.C.2
Wellsbury, P.3
Bos, D.4
-
6
-
-
34248577608
-
DNA stable-isotope probing
-
Neufeld, J. D., Vohra, J., Dumont, M. G., Lueders, T. et al., DNA stable-isotope probing. Nat. Protoc. 2007, 2, 860-866.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 860-866
-
-
Neufeld, J.D.1
Vohra, J.2
Dumont, M.G.3
Lueders, T.4
-
7
-
-
0036840287
-
RNA stable isotope probing, a novel means of linking microbial community function to phylogeny
-
Manefield, M., Whiteley, A. S., Griffiths, R. I., Bailey, M. J., RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl. Environ. Microbiol. 2002, 68, 5367-5373.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5367-5373
-
-
Manefield, M.1
Whiteley, A.S.2
Griffiths, R.I.3
Bailey, M.J.4
-
8
-
-
78649957273
-
Protein stable isotope probing (Protein-SIP)
-
Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J. et al., Protein stable isotope probing (Protein-SIP). Nat. Protoc. 2010, 5, 1957-1966.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 1957-1966
-
-
Jehmlich, N.1
Schmidt, F.2
Taubert, M.3
Seifert, J.4
-
9
-
-
53049085850
-
Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)
-
Jehmlich, N., Schmidt, F., Hartwich, M., von Bergen, M. et al., Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP). Rapid Commun. Mass Spectrom. 2008, 22, 2889-2897.
-
(2008)
Rapid Commun. Mass Spectrom.
, vol.22
, pp. 2889-2897
-
-
Jehmlich, N.1
Schmidt, F.2
Hartwich, M.3
von Bergen, M.4
-
10
-
-
67149131864
-
Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
-
Jehmlich, N., Schmidt, F., Taubert, M., Seifert, J. et al., Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments. Rapid Commun. Mass Spectrom. 2009, 23, 1871-1878.
-
(2009)
Rapid Commun. Mass Spectrom.
, vol.23
, pp. 1871-1878
-
-
Jehmlich, N.1
Schmidt, F.2
Taubert, M.3
Seifert, J.4
-
11
-
-
77954398650
-
Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach
-
Bastida, F., Rosell, M., Franchini, A. G., Seifert, J. et al., Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach. FEMS Microbiol. Ecol. 2010, 73, 370-384.
-
(2010)
FEMS Microbiol. Ecol.
, vol.73
, pp. 370-384
-
-
Bastida, F.1
Rosell, M.2
Franchini, A.G.3
Seifert, J.4
-
13
-
-
29144431588
-
Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics
-
Snijders, A. P. L., de Koning, B., Wright, P. C., Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics. J. Proteome Res. 2005, 4, 2185-2191.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 2185-2191
-
-
Snijders, A.P.L.1
de Koning, B.2
Wright, P.C.3
-
14
-
-
31644449424
-
35S into proteins detectable by autoradiography
-
35S into proteins detectable by autoradiography. J. Histochem. Cytochem. 1958, 6, 185-190.
-
(1958)
J. Histochem. Cytochem.
, vol.6
, pp. 185-190
-
-
Sirlin, J.L.1
-
15
-
-
0033931002
-
Identification of stress-inducible proteins in Lactobacillus delbrueckii subsp. bulgaricus
-
Lim, E. M., Ehrlich, S. D., Maguin, E., Identification of stress-inducible proteins in Lactobacillus delbrueckii subsp. bulgaricus. Electrophoresis 2000, 21, 2557-2561.
-
(2000)
Electrophoresis
, vol.21
, pp. 2557-2561
-
-
Lim, E.M.1
Ehrlich, S.D.2
Maguin, E.3
-
16
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
17
-
-
33847174067
-
Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research
-
Wiese, S., Reidegeld, K. A., Meyer, H. E., Warscheid, B., Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research. Proteomics 2007, 7, 340-350.
-
(2007)
Proteomics
, vol.7
, pp. 340-350
-
-
Wiese, S.1
Reidegeld, K.A.2
Meyer, H.E.3
Warscheid, B.4
-
18
-
-
44649164495
-
Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques
-
Dreisbach, A., Otto, A., Becher, D., Hammer, E. et al., Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques. Proteomics 2008, 8, 2062-2076.
-
(2008)
Proteomics
, vol.8
, pp. 2062-2076
-
-
Dreisbach, A.1
Otto, A.2
Becher, D.3
Hammer, E.4
-
19
-
-
77954371891
-
Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis
-
Soufi, B., Kumar, C., Gnad, F., Mann, M. et al., Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis. J. Proteome Res. 2010, 9, 3638-3646.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 3638-3646
-
-
Soufi, B.1
Kumar, C.2
Gnad, F.3
Mann, M.4
-
20
-
-
77955119702
-
Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells
-
Schmidt, F., Scharf, S. S., Hildebrandt, P., Burian, M. et al., Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells. Proteomics 2010, 10, 2801-2811.
-
(2010)
Proteomics
, vol.10
, pp. 2801-2811
-
-
Schmidt, F.1
Scharf, S.S.2
Hildebrandt, P.3
Burian, M.4
-
21
-
-
63649139204
-
Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry
-
Phanstiel, D., Unwin, R., McAlister, G. C., Coon, J. J., Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry. Anal. Chem. 2009, 81, 1693-1698.
-
(2009)
Anal. Chem.
, vol.81
, pp. 1693-1698
-
-
Phanstiel, D.1
Unwin, R.2
McAlister, G.C.3
Coon, J.J.4
-
22
-
-
0029824723
-
Characterization and expression of the plasmid-borne bedD gene from Pseudomonas putida ML2, which codes for a NAD+-dependent cis-benzene dihydrodiol dehydrogenase
-
Fong, K. P., Goh, C. B., Tan, H. M., Characterization and expression of the plasmid-borne bedD gene from Pseudomonas putida ML2, which codes for a NAD+-dependent cis-benzene dihydrodiol dehydrogenase. J. Bacteriol. 1996, 178, 5592-5601.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5592-5601
-
-
Fong, K.P.1
Goh, C.B.2
Tan, H.M.3
-
23
-
-
0027203859
-
The Pseudomonas putida ML2 plasmid-encoded genes for benzene dioxygenase are unusual in codon usage and low in G+C content
-
Tan, H. M., Tang, H. Y., Joannou, C. L., Abdel-Wahab, N. H., Mason, J. R., The Pseudomonas putida ML2 plasmid-encoded genes for benzene dioxygenase are unusual in codon usage and low in G+C content. Gene 1993, 130, 33-39.
-
(1993)
Gene
, vol.130
, pp. 33-39
-
-
Tan, H.M.1
Tang, H.Y.2
Joannou, C.L.3
Abdel-Wahab, N.H.4
Mason, J.R.5
-
24
-
-
0014027918
-
The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. IV. Regulation
-
Ornston, L. N., The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. IV. Regulation. J. Biol. Chem. 1966, 241, 3800-3810.
-
(1966)
J. Biol. Chem.
, vol.241
, pp. 3800-3810
-
-
Ornston, L.N.1
-
25
-
-
0028851013
-
Discontinuities in the evolution of Pseudomonas putida cat genes
-
Houghton, J. E., Brown, T. M., Appel, A. J., Hughes, E. J., Ornston, L. N., Discontinuities in the evolution of Pseudomonas putida cat genes. J. Bacteriol. 1995, 177, 401-412.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 401-412
-
-
Houghton, J.E.1
Brown, T.M.2
Appel, A.J.3
Hughes, E.J.4
Ornston, L.N.5
-
26
-
-
0028060530
-
The induction and repression of benzene and catechol oxidizing capacity of Pseudomonas putida ML2 studied in perturbed chemostat culture
-
Mason, J. R., The induction and repression of benzene and catechol oxidizing capacity of Pseudomonas putida ML2 studied in perturbed chemostat culture. Arch. Microbiol. 1994, 162, 57-62.
-
(1994)
Arch. Microbiol.
, vol.162
, pp. 57-62
-
-
Mason, J.R.1
-
27
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J. C., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
28
-
-
29144431588
-
Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics
-
Snijders, A. P. L., de Koning, B., Wright, P. C., Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics. J. Proteome Res. 2005, 4, 2185-2191.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 2185-2191
-
-
Snijders, A.P.L.1
de Koning, B.2
Wright, P.C.3
-
29
-
-
41149172403
-
Table of the isotopic compositions of the elements
-
De Biévre, P., Taylor, P. D. P., Table of the isotopic compositions of the elements. Int. J. Mass Spectrom. Ion Process. 1993, 123, 149-166.
-
(1993)
Int. J. Mass Spectrom. Ion Process.
, vol.123
, pp. 149-166
-
-
De Biévre, P.1
Taylor, P.D.P.2
-
30
-
-
26544479794
-
The 1995 update to the atomic mass evaluation
-
Audi, G., Wapstra, A. H., The 1995 update to the atomic mass evaluation. Nucl. Phys. A 1995, 595, 409-480.
-
(1995)
Nucl. Phys. A
, vol.595
, pp. 409-480
-
-
Audi, G.1
Wapstra, A.H.2
-
31
-
-
0025198763
-
Modeling of the bacterial growth curve
-
Zwietering, M. H., Jongenburger, I., Rombouts, F. M., van 't Riet, K., Modeling of the bacterial growth curve. Appl. Environ. Microbiol. 1990, 56, 1875-1881.
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 1875-1881
-
-
Zwietering, M.H.1
Jongenburger, I.2
Rombouts, F.M.3
van 't Riet, K.4
-
32
-
-
0029795374
-
The beta-ketoadipate pathway and the biology of self-identity
-
Harwood, C. S., Parales, R. E., The beta-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 1996, 50, 553-590.
-
(1996)
Annu. Rev. Microbiol.
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
33
-
-
0023655066
-
Benzene dioxygenase in Pseudomonas putida. Subunit composition and immuno-cross-reactivity with other aromatic dioxygenases
-
Zamanian, M., Mason, J. R., Benzene dioxygenase in Pseudomonas putida. Subunit composition and immuno-cross-reactivity with other aromatic dioxygenases. Biochem. J. 1987, 244, 611-616.
-
(1987)
Biochem. J.
, vol.244
, pp. 611-616
-
-
Zamanian, M.1
Mason, J.R.2
|