메뉴 건너뛰기




Volumn 10, Issue 8, 2008, Pages 1964-1977

Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment

Author keywords

[No Author keywords available]

Indexed keywords

BENZENE; CARBON; COAL TAR; FRESH WATER;

EID: 58149226417     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2008.01612.x     Document Type: Article
Times cited : (52)

References (78)
  • 2
    • 0006304427 scopus 로고    scopus 로고
    • ATSDR Agency for Toxic Substances and Disease Registry, Atlanta, GA, USA: US Public Health Service, US Department of Health and Human Services
    • ATSDR (Agency for Toxic Substances and Disease Registry) (1996) Toxicological Profile for Creosote. Atlanta, GA, USA: US Public Health Service, US Department of Health and Human Services.
    • (1996) Toxicological Profile for Creosote
  • 3
    • 0003815886 scopus 로고    scopus 로고
    • ATSDR Agency for Toxic Substances and Disease Registry, Atlanta, GA, USA: US Public Health Service, US Department of Health and Human Services
    • ATSDR (Agency for Toxic Substances and Disease Registry) (2005) Toxicological Profile for Benzene. (Draft for Public Comment). Atlanta, GA, USA: US Public Health Service, US Department of Health and Human Services.
    • (2005) Toxicological Profile for Benzene. (Draft for Public Comment)
  • 4
    • 0036690823 scopus 로고    scopus 로고
    • Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities
    • Bakermans, C., Hohnstock-Ashe, A.M., Padmanabhan, S., Padmanabhan, P., and Madsen, E.L. (2002) Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities. Microb Ecol 44: 107-117.
    • (2002) Microb Ecol , vol.44 , pp. 107-117
    • Bakermans, C.1    Hohnstock-Ashe, A.M.2    Padmanabhan, S.3    Padmanabhan, P.4    Madsen, E.L.5
  • 5
    • 0017030513 scopus 로고
    • New approach to the cultivation of methanogenic bacteria: 2- mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressurized atmosphere
    • Balch, W.E., and Wolfe, R.S. (1976) New approach to the cultivation of methanogenic bacteria: 2- mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressurized atmosphere. Appl Environ Microbiol 32: 781-791.
    • (1976) Appl Environ Microbiol , vol.32 , pp. 781-791
    • Balch, W.E.1    Wolfe, R.S.2
  • 6
    • 34249684326 scopus 로고    scopus 로고
    • Stable isotope probing achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density
    • Buckley, D.H., Huangyutitham, V., Hsu, S.-F., and Nelson, T.A. (2006) Stable isotope probing achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density. Appl Environ Microbiol 73: 3189-3295.
    • (2006) Appl Environ Microbiol , vol.73 , pp. 3189-3295
    • Buckley, D.H.1    Huangyutitham, V.2    Hsu, S.-F.3    Nelson, T.A.4
  • 7
    • 0033050590 scopus 로고    scopus 로고
    • Anaerobic benzene biodegradation linked to nitrate reduction
    • Burland, S.B., and Edwards, E.A. (1999) Anaerobic benzene biodegradation linked to nitrate reduction. Appl Environ Microbiol 65: 529-533.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 529-533
    • Burland, S.B.1    Edwards, E.A.2
  • 8
    • 33745767937 scopus 로고    scopus 로고
    • Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA
    • Cadillo-Quiroz, H., Brauer, S., Yashiro, E., Sun, C., Yavitt, J., and Zinder, S. (2006) Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA. Environ Microbiol 8: 1428-1440.
    • (2006) Environ Microbiol , vol.8 , pp. 1428-1440
    • Cadillo-Quiroz, H.1    Brauer, S.2    Yashiro, E.3    Sun, C.4    Yavitt, J.5    Zinder, S.6
  • 9
    • 0034176389 scopus 로고    scopus 로고
    • Detection of phenol and benzoate as intermediates of anaerobic benzene bio- degradation under different terminal electron accepting conditions
    • Caldwell, M.E., and Suflita, J.M. (2000) Detection of phenol and benzoate as intermediates of anaerobic benzene bio- degradation under different terminal electron accepting conditions. Environ Sci Technol 34: 1216-1220.
    • (2000) Environ Sci Technol , vol.34 , pp. 1216-1220
    • Caldwell, M.E.1    Suflita, J.M.2
  • 10
    • 29144533404 scopus 로고    scopus 로고
    • Anaerobic degradation of benzene, toluene, ethyl- benzene, and xylene compounds by Dechloromonas strain RCB
    • Chakraborty, R., O'Connor, S.M., Chan, E., and Coates, J.D. (2005) Anaerobic degradation of benzene, toluene, ethyl- benzene, and xylene compounds by Dechloromonas strain RCB. Appl Environ Microbiol 71: 8649-8655.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8649-8655
    • Chakraborty, R.1    O'Connor, S.M.2    Chan, E.3    Coates, J.D.4
  • 11
    • 0033975110 scopus 로고    scopus 로고
    • Degradation of n-hexadecane and its metabolites by Pseudomonas aeruginosa under microaerobic and anaerobic denitrifying conditions
    • Chayabutra, C., and Ju L.K. (2000) Degradation of n-hexadecane and its metabolites by Pseudomonas aeruginosa under microaerobic and anaerobic denitrifying conditions. Appl Environ Microbiol 66: 493-498.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 493-498
    • Chayabutra, C.1    Ju, L.K.2
  • 12
    • 0035963322 scopus 로고    scopus 로고
    • Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas
    • Coates, J.D., Chakraborty, R., Lack, J.G., O'Connor, S.M., Cole, K.A., Bender, K.S., and Achenbach, L.A. (2001) Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas. Nature 411: 1039-1043.
    • (2001) Nature , vol.411 , pp. 1039-1043
    • Coates, J.D.1    Chakraborty, R.2    Lack, J.G.3    O'Connor, S.M.4    Cole, K.A.5    Bender, K.S.6    Achenbach, L.A.7
  • 13
  • 14
    • 0037251969 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-ll): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q., Kulam, S.A., et al. (2003) The Ribosomal Database Project (RDP-ll): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31: 442-443.
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1    Chai, B.2    Marsh, T.L.3    Farris, R.J.4    Wang, Q.5    Kulam, S.A.6
  • 15
    • 33846096841 scopus 로고    scopus 로고
    • Assessment of anaerobic benzene degradation potential using 16S rRNA gene-targeted real-time PCR
    • Da Silva, M.L.B., and Alvarez, P.J.J. (2007) Assessment of anaerobic benzene degradation potential using 16S rRNA gene-targeted real-time PCR. Environ Microbiol 9: 72-80.
    • (2007) Environ Microbiol , vol.9 , pp. 72-80
    • Da Silva, M.L.B.1    Alvarez, P.J.J.2
  • 16
    • 29144520930 scopus 로고    scopus 로고
    • Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol- degrading soil microbial community
    • DeRito, C.M., Pumphrey, G.M., and Madsen, E.L. (2005) Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol- degrading soil microbial community. Appl Environ Microbiol 71: 7858-7865.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7858-7865
    • DeRito, C.M.1    Pumphrey, G.M.2    Madsen, E.L.3
  • 17
    • 19144372182 scopus 로고    scopus 로고
    • Stable isotope probing-linking microbial identity to function
    • Dumont, M.G., and Murrell, J.C. (2005) Stable isotope probing-linking microbial identity to function. Nat Rev Microbiol 3: 499-504.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 499-504
    • Dumont, M.G.1    Murrell, J.C.2
  • 19
    • 0037224856 scopus 로고    scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons at low temperature under aerobic and nitrate-reducing conditions in enrichment cultures from northern soils
    • Eriksson, M., and Sodersten, E., Yu, Z., Dalhammar, G., and Mohn, W.W. (2003) Degradation of polycyclic aromatic hydrocarbons at low temperature under aerobic and nitrate-reducing conditions in enrichment cultures from northern soils. Appl Environ Microbiol 69: 275-284.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 275-284
    • Eriksson, M.1    Sodersten, E.2    Yu, Z.3    Dalhammar, G.4    Mohn, W.W.5
  • 20
    • 22744433578 scopus 로고    scopus 로고
    • Effects of long-term benzene pollution on bacterial diversity and community structure in groundwater
    • Fahy, A., Lethbridge, G., Earle, R., Ball, A.S., Timmis, K.N., and McGenity, T.J. (2005) Effects of long-term benzene pollution on bacterial diversity and community structure in groundwater. Environ Microbiol 7: 1192-1199.
    • (2005) Environ Microbiol , vol.7 , pp. 1192-1199
    • Fahy, A.1    Lethbridge, G.2    Earle, R.3    Ball, A.S.4    Timmis, K.N.5    McGenity, T.J.6
  • 21
    • 33750090667 scopus 로고    scopus 로고
    • Heterogeneous aerobic benzene-degrading communities in oxygen-depleted groundwaters
    • Fahy, A., McGenity, T.J., Timmis, K.N., and Ball, A.S. (2006) Heterogeneous aerobic benzene-degrading communities in oxygen-depleted groundwaters. FEMS Microbiol Ecol 58: 260-270.
    • (2006) FEMS Microbiol Ecol , vol.58 , pp. 260-270
    • Fahy, A.1    McGenity, T.J.2    Timmis, K.N.3    Ball, A.S.4
  • 24
    • 0029147966 scopus 로고
    • Natural selection of PAH-degrading bacterial guilds at coal-tar disposal sites
    • Ghiorse, W.C., Herrick, J.B., Sandoli, R.L., and Madsen, E.L. (1995) Natural selection of PAH-degrading bacterial guilds at coal-tar disposal sites. Environ Health Perspect 103: 107-111.
    • (1995) Environ Health Perspect , vol.103 , pp. 107-111
    • Ghiorse, W.C.1    Herrick, J.B.2    Sandoli, R.L.3    Madsen, E.L.4
  • 25
    • 0014314575 scopus 로고
    • Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzene
    • Gibson, D.T., Koch, J.R., and Kallio, R.E. (1968) Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzene. Biochemistry 7: 2653-2658.
    • (1968) Biochemistry , vol.7 , pp. 2653-2658
    • Gibson, D.T.1    Koch, J.R.2    Kallio, R.E.3
  • 26
    • 0023153032 scopus 로고
    • Transformation of toluene and benzene by mixed methanogenic cultures
    • Grbic-Galic, D., and Vogel, T.M. (1987) Transformation of toluene and benzene by mixed methanogenic cultures. Appl Environ Microbiol 53: 254-260.
    • (1987) Appl Environ Microbiol , vol.53 , pp. 254-260
    • Grbic-Galic, D.1    Vogel, T.M.2
  • 27
    • 0042052049 scopus 로고    scopus 로고
    • Diversity and correlation of specific aromatic hydrocarbon biodegradation capabilities
    • Gulensoy, N., and Alvarez, P.J.J. (1999) Diversity and correlation of specific aromatic hydrocarbon biodegradation capabilities. Biodegradation 10: 331-340
    • (1999) Biodegradation , vol.10 , pp. 331-340
    • Gulensoy, N.1    Alvarez, P.J.J.2
  • 28
    • 0029795374 scopus 로고    scopus 로고
    • The p-ketoadipate pathway and the biology of self-identity
    • Harwood, C.S., and Parales, R.E. (1996) The p-ketoadipate pathway and the biology of self-identity. Ann Rev Microbiol 50: 553-590.
    • (1996) Ann Rev Microbiol , vol.50 , pp. 553-590
    • Harwood, C.S.1    Parales, R.E.2
  • 29
    • 64849098664 scopus 로고    scopus 로고
    • Hoefs, J. (2004) Stable Isotope Geochemistry, 5th edn. New York, USA: Springer. Huber, T., Faulkner, G., and Hugenholtz, P. (2004) Bellero- phon; a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
    • Hoefs, J. (2004) Stable Isotope Geochemistry, 5th edn. New York, USA: Springer. Huber, T., Faulkner, G., and Hugenholtz, P. (2004) Bellero- phon; a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
  • 30
    • 0035487318 scopus 로고    scopus 로고
    • Counting the uncountable: Statistical approaches to estimating microbial diversity
    • Hughes, J.B., Hellmann, J.J., Ricketts, T.H., and Bohannan, B.J.M. (2001) Counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67: 4399-4406.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4399-4406
    • Hughes, J.B.1    Hellmann, J.J.2    Ricketts, T.H.3    Bohannan, B.J.M.4
  • 31
    • 64849099231 scopus 로고    scopus 로고
    • IARC (Interagency Research on Cancer) (2004) Overall Evaluations of Carcinogenicity to Humans: As Evaluated in IARC Monographs 1-82 (A Total of 900 Agents, Mixtures and Exposures). Lyon, France: International Agency for Research on Cancer. [WWW document, accessed 15 February 2005.] URL http://www-cie.iarc.fr/ monoeval/crthall.html
    • IARC (Interagency Research on Cancer) (2004) Overall Evaluations of Carcinogenicity to Humans: As Evaluated in IARC Monographs Volumes 1-82 (A Total of 900 Agents, Mixtures and Exposures). Lyon, France: International Agency for Research on Cancer. [WWW document, accessed 15 February 2005.] URL http://www-cie.iarc.fr/ monoeval/crthall.html
  • 32
    • 20444393042 scopus 로고    scopus 로고
    • Anaerobic degradation of benzene, toluene, ethylbenzene, and o-xylene in sediment-free iron-reducing enrichment cultures
    • Jahn, M.K., Haderlein, S.B., and Meckenstock, R.U. (2005) Anaerobic degradation of benzene, toluene, ethylbenzene, and o-xylene in sediment-free iron-reducing enrichment cultures. Appl Environ Microbiol 71: 3355-3358.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3355-3358
    • Jahn, M.K.1    Haderlein, S.B.2    Meckenstock, R.U.3
  • 33
    • 0345686678 scopus 로고    scopus 로고
    • Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment
    • Jeon, C.O., Park, W., Padmanabhan, P., DeRito, C., Snape, J.R., and Madsen, E.L. (2003) Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment. Proc Natl Acad Sci USA 100: 13591-13596.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 13591-13596
    • Jeon, C.O.1    Park, W.2    Padmanabhan, P.3    DeRito, C.4    Snape, J.R.5    Madsen, E.L.6
  • 34
    • 33646584483 scopus 로고    scopus 로고
    • RNA-based stable isotope probing and isolation of anaerobic benzene-degrading bacteria from gasoline- contaminated groundwater
    • Kasai, Y., Takahata, Y., Manefield, M., and Watanabe, K. (2006) RNA-based stable isotope probing and isolation of anaerobic benzene-degrading bacteria from gasoline- contaminated groundwater. Appl Environ Microbiol 72: 3586-3592.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3586-3592
    • Kasai, Y.1    Takahata, Y.2    Manefield, M.3    Watanabe, K.4
  • 37
    • 35948975729 scopus 로고    scopus 로고
    • The use of stable isotope probing to identify key iron- reducing microorganisms involved in anaerobic benzene degradation
    • Kunapuli, U., Lueders, T., and Meckenstock, R. (2007) The use of stable isotope probing to identify key iron- reducing microorganisms involved in anaerobic benzene degradation. ISME J1 : 643-653.
    • (2007) ISME J , vol.1 , pp. 643-653
    • Kunapuli, U.1    Lueders, T.2    Meckenstock, R.3
  • 38
    • 34249939326 scopus 로고    scopus 로고
    • Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs)
    • Leigh, M.B., Pellizari, V.H., UhIAk, O., Sutka, R., Rodrigues, J., Ostrom, N.E., et al. (2007) Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J1 : 134-148.
    • (2007) ISME J , vol.1 , pp. 134-148
    • Leigh, M.B.1    Pellizari, V.H.2    UhIAk, O.3    Sutka, R.4    Rodrigues, J.5    Ostrom, N.E.6
  • 40
    • 0030022401 scopus 로고    scopus 로고
    • Rapid anaerobic benzene degradation with a variety of chelated Fe(III) forms
    • Lovley, D.R., Woodward, J.C., and Chapelle, F.H. (1996) Rapid anaerobic benzene degradation with a variety of chelated Fe(III) forms. Appl Environ Microbiol 62: 288-291.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 288-291
    • Lovley, D.R.1    Woodward, J.C.2    Chapelle, F.H.3
  • 41
    • 0842266321 scopus 로고    scopus 로고
    • Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic inter-actions with fungi and protozoa in oxic rice field soil
    • Lueders, T., Wagner, B., Claus, P., and Friedrich, M.W. (2004) Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic inter-actions with fungi and protozoa in oxic rice field soil. Environ Microbiol 6: 60.
    • (2004) Environ Microbiol , vol.6 , pp. 60
    • Lueders, T.1    Wagner, B.2    Claus, P.3    Friedrich, M.W.4
  • 42
    • 17844366280 scopus 로고    scopus 로고
    • Identifying microorganisms responsible for ecologically significant biogeochemical processes
    • Madsen, E.L. (2005) Identifying microorganisms responsible for ecologically significant biogeochemical processes. Nat Rev Microbiol 3: 439-446.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 439-446
    • Madsen, E.L.1
  • 43
    • 31944439463 scopus 로고    scopus 로고
    • The use of stable isotope probing techniques in bioreactor and field studies on bioremediation
    • Madsen, E.L. (2006) The use of stable isotope probing techniques in bioreactor and field studies on bioremediation. Curr Opin Biotechnol 17: 92-97.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 92-97
    • Madsen, E.L.1
  • 44
    • 0025918927 scopus 로고
    • In situ biodegradation: Microbiological patterns in a contaminated aquifer
    • Madsen, E.L., Sinclair, J.L., and Ghiorse, W.C. (1991) In situ biodegradation: microbiological patterns in a contaminated aquifer. Science 252: 830-833.
    • (1991) Science , vol.252 , pp. 830-833
    • Madsen, E.L.1    Sinclair, J.L.2    Ghiorse, W.C.3
  • 45
    • 0029852588 scopus 로고    scopus 로고
    • Oxygen limitations and aging as explanation for the persistence of naphthalene in coal-tar contaminated surface sediments
    • Madsen, E.L., Mann, C.L., and Bilotta, S. (1996) Oxygen limitations and aging as explanation for the persistence of naphthalene in coal-tar contaminated surface sediments. Environ Toxicol Chem 15: 1876-1882.
    • (1996) Environ Toxicol Chem , vol.15 , pp. 1876-1882
    • Madsen, E.L.1    Mann, C.L.2    Bilotta, S.3
  • 46
    • 33745514006 scopus 로고    scopus 로고
    • Effect of dissolved oxygen regime on growth dynamics of Pseudomonas spp. during benzene degradation
    • Mahendran, B., Choi, N.-C., Choi, J.-W., and Kim, D.-J. (2006) Effect of dissolved oxygen regime on growth dynamics of Pseudomonas spp. during benzene degradation. Appl Microbiol Biotechnol 71: 350-354.
    • (2006) Appl Microbiol Biotechnol , vol.71 , pp. 350-354
    • Mahendran, B.1    Choi, N.-C.2    Choi, J.-W.3    Kim, D.-J.4
  • 47
    • 0036452120 scopus 로고    scopus 로고
    • Technical considerations for RNA- based stable isotope probing: An approach to associating microbial diversity with microbial community function
    • Manefield, M., Whiteley, A.S., Ostle, N., Ineson, P., and Bailey, M.J. (2002a) Technical considerations for RNA- based stable isotope probing: an approach to associating microbial diversity with microbial community function. Rapid Commun Mass Spectrom 16: 2179-2183.
    • (2002) Rapid Commun Mass Spectrom , vol.16 , pp. 2179-2183
    • Manefield, M.1    Whiteley, A.S.2    Ostle, N.3    Ineson, P.4    Bailey, M.J.5
  • 48
    • 0036840287 scopus 로고    scopus 로고
    • RNA stable isotope probing, a novel means of linking microbial community function to phylogeny
    • Manefield, M., Whiteley, A.S., Griffiths, R.I., and Bailey, M.J. (2002b) RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol 68: 5367-5373.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5367-5373
    • Manefield, M.1    Whiteley, A.S.2    Griffiths, R.I.3    Bailey, M.J.4
  • 49
    • 0002448761 scopus 로고
    • Energetics and bacterial growth
    • Faust, S.D, and Hunter, J.V, eds, New York, USA: Marcel Dekker
    • McCarty, P.L. (1971) Energetics and bacterial growth. In Organic Compounds in Aquatic Environments. Faust, S.D., and Hunter, J.V. (eds). New York, USA: Marcel Dekker.
    • (1971) Organic Compounds in Aquatic Environments
    • McCarty, P.L.1
  • 50
    • 0000959014 scopus 로고    scopus 로고
    • Anaerobic benzene Biodegradation: A microcosm survey
    • Nales, M., Butler, B.J., and Edwards, E.A. (1998) Anaerobic benzene Biodegradation: a microcosm survey. J Biore- mediation 2: 125-144.
    • (1998) J Biore- mediation , vol.2 , pp. 125-144
    • Nales, M.1    Butler, B.J.2    Edwards, E.A.3
  • 51
    • 34248137874 scopus 로고    scopus 로고
    • Methodological considerations for the use of stable isotope probing in microbial ecology
    • Neufeld, J.D., Dumont, M.G., Vohra, J., and Murrell, J.C. (2007a) Methodological considerations for the use of stable isotope probing in microbial ecology. Microb Ecol 53: 435-442.
    • (2007) Microb Ecol , vol.53 , pp. 435-442
    • Neufeld, J.D.1    Dumont, M.G.2    Vohra, J.3    Murrell, J.C.4
  • 53
    • 17144388923 scopus 로고    scopus 로고
    • Aerobic biodeg- radation of benzene and toluene under hypersaline conditions at the Great Salt Plains, Oklahoma
    • Nicholson, C.A., and Fathepure, B.Z. (2005) Aerobic biodeg- radation of benzene and toluene under hypersaline conditions at the Great Salt Plains, Oklahoma. FEMS Microbiol Lett 245: 257-262.
    • (2005) FEMS Microbiol Lett , vol.245 , pp. 257-262
    • Nicholson, C.A.1    Fathepure, B.Z.2
  • 54
    • 0037337335 scopus 로고    scopus 로고
    • Respiration of 13C- labeled substrates added to soil in the field and subsequent 16S rRNA gene analysis of 13C-labeled soil DNA
    • Padmanabhan, P., Padmanabhan, S., DeRito, C., Gray, A., Gannon, D., Snape, J.R., et al. (2003) Respiration of 13C- labeled substrates added to soil in the field and subsequent 16S rRNA gene analysis of 13C-labeled soil DNA. Appl Environ Microbiol 69: 1614-1622.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1614-1622
    • Padmanabhan, P.1    Padmanabhan, S.2    DeRito, C.3    Gray, A.4    Gannon, D.5    Snape, J.R.6
  • 55
    • 0027728946 scopus 로고
    • Coal tar dissolution in water-miscible solvents: Experimental evaluation
    • Peters, C.A., and Luthy, R.W. (1993) Coal tar dissolution in water-miscible solvents: experimental evaluation. Environ Sci Technol 27: 2831-2843.
    • (1993) Environ Sci Technol , vol.27 , pp. 2831-2843
    • Peters, C.A.1    Luthy, R.W.2
  • 56
    • 0031732243 scopus 로고    scopus 로고
    • Molecular characterization of a sulfate-reducing consortium which mineralizes benzene
    • Phelps, C.D., Kerkhof, L.J., and Young, L.Y. (1998) Molecular characterization of a sulfate-reducing consortium which mineralizes benzene. FEMS Microbiol Ecol 27: 269-279.
    • (1998) FEMS Microbiol Ecol , vol.27 , pp. 269-279
    • Phelps, C.D.1    Kerkhof, L.J.2    Young, L.Y.3
  • 57
    • 0025197555 scopus 로고
    • Identification and catabolic activity of well-derived gasoline-degrading bacteria and a contaminated aquifer
    • Ridgway, H.F., Safarik, J., Phipps, D., Carl, P., and Clark, D. (1990) Identification and catabolic activity of well-derived gasoline-degrading bacteria and a contaminated aquifer. Appl Environ Microbiol 56: 3565-3575.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 3565-3575
    • Ridgway, H.F.1    Safarik, J.2    Phipps, D.3    Carl, P.4    Clark, D.5
  • 58
    • 0032976385 scopus 로고    scopus 로고
    • Microbial communities associated with anaerobic benzene degradation in a petroleum- contaminated aquifer
    • Rooney-Varga, J.N., Anderson, R.T., Fraga, J.L., Ringelberg, D., and Lovley, D.R. (1999) Microbial communities associated with anaerobic benzene degradation in a petroleum- contaminated aquifer. Appl Environ Microbiol 65: 356-3063.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 356-3063
    • Rooney-Varga, J.N.1    Anderson, R.T.2    Fraga, J.L.3    Ringelberg, D.4    Lovley, D.R.5
  • 59
    • 0027139553 scopus 로고
    • The role of bioattenuation in the management of aromatic hydrocarbon plumes in aquifers
    • Salanitro, J.P. (1993) The role of bioattenuation in the management of aromatic hydrocarbon plumes in aquifers. Ground Water Monitoring and Remediation 13: 150-161.
    • (1993) Ground Water Monitoring and Remediation , vol.13 , pp. 150-161
    • Salanitro, J.P.1
  • 60
    • 0030871461 scopus 로고    scopus 로고
    • Energetics of syntrophc cooperation in methanogenic degradation
    • Schink, B. (1997) Energetics of syntrophc cooperation in methanogenic degradation. Microbiol Molec Biol Rev 61: 262-280.
    • (1997) Microbiol Molec Biol Rev , vol.61 , pp. 262-280
    • Schink, B.1
  • 61
    • 33750078701 scopus 로고    scopus 로고
    • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures
    • Schloss, P.D., and Handelsman, J. (2006) Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol 72: 6773-6779.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6773-6779
    • Schloss, P.D.1    Handelsman, J.2
  • 62
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • Schloss, P.D., Larget, B.R., and Handelsman, J. (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-5492.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 63
    • 63349090831 scopus 로고    scopus 로고
    • The anaerobic way of life
    • 3rd edn. Dworkin, M.W, Falkow, S, Rosenberg, E, Schleifer, K.-H, and Stackebrandt, E, eds, New York, USA: Springer Verlag, pp
    • Schmitz, R.A., Daniel, R., Deppenmeir, U., and Gottschalk, G. (2006) The anaerobic way of life. In The Prokaryotes, Vol. 2, 3rd edn. Dworkin, M.W., Falkow, S., Rosenberg, E., Schleifer, K.-H., and Stackebrandt, E. (eds). New York, USA: Springer Verlag, pp. 86-101.
    • (2006) The Prokaryotes , vol.2 , pp. 86-101
    • Schmitz, R.A.1    Daniel, R.2    Deppenmeir, U.3    Gottschalk, G.4
  • 64
    • 33746155887 scopus 로고    scopus 로고
    • In situ microcosms to evaluate natural attenuation potentials in contaminated aquifers
    • Stelzer, N., Buning, C., Pfeifer, F., Dohrmann, A.B., Tebbe, C.C., Nijenhuis, I., et al. (2006) In situ microcosms to evaluate natural attenuation potentials in contaminated aquifers. Org Geochem 37: 1394-1410.
    • (2006) Org Geochem , vol.37 , pp. 1394-1410
    • Stelzer, N.1    Buning, C.2    Pfeifer, F.3    Dohrmann, A.B.4    Tebbe, C.C.5    Nijenhuis, I.6
  • 65
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M.T., and Giovannoni, S.J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62: 625-630.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 66
    • 33750983332 scopus 로고    scopus 로고
    • Rapid intrinsic biodegradation of benzene, toluene, and xylenes at the boundary of a gasoline-contaminated plume under natural attenuation
    • Takahata, Y., Kasai, Y., Hoaki, T., and Watanabe, K. (2006) Rapid intrinsic biodegradation of benzene, toluene, and xylenes at the boundary of a gasoline-contaminated plume under natural attenuation. Appl Microbiol Biotechnol 73: 713-722.
    • (2006) Appl Microbiol Biotechnol , vol.73 , pp. 713-722
    • Takahata, Y.1    Kasai, Y.2    Hoaki, T.3    Watanabe, K.4
  • 67
    • 33645318142 scopus 로고    scopus 로고
    • Benzene degradation coupled with chlorate reduction in a soil column study
    • Tan, N.C.G., Doesburg, W., Langenhoff, A.A.M., and Stams, A.J.M. (2006) Benzene degradation coupled with chlorate reduction in a soil column study. Biodegradation 17: 113-119.
    • (2006) Biodegradation , vol.17 , pp. 113-119
    • Tan, N.C.G.1    Doesburg, W.2    Langenhoff, A.A.M.3    Stams, A.J.M.4
  • 68
    • 0002828747 scopus 로고
    • Monitoring sulfate-reducing bacteria: Comparison of enumeration media
    • Tanner, R.S. (1989) Monitoring sulfate-reducing bacteria: comparison of enumeration media. J Microbiol Methods 10: 83-90.
    • (1989) J Microbiol Methods , vol.10 , pp. 83-90
    • Tanner, R.S.1
  • 69
    • 3042564411 scopus 로고    scopus 로고
    • Cultivation of bacteria and fungi
    • 2nd edn. Hurst, C.J, Crawford, R.L, Knudsen, G.R, McInerney, M.J, and Stetzenbach, L.D, eds, Washington, DC, USA: American Society for Microbiology, pp
    • Tanner, R.S. (2002) Cultivation of bacteria and fungi. In Manual of Environmental Microbiology, 2nd edn. Hurst, C.J., Crawford, R.L., Knudsen, G.R., McInerney, M.J., and Stetzenbach, L.D. (eds). Washington, DC, USA: American Society for Microbiology, pp. 62-70.
    • (2002) Manual of Environmental Microbiology , pp. 62-70
    • Tanner, R.S.1
  • 71
    • 0037297033 scopus 로고    scopus 로고
    • Physiological and molecular characterization of anaerobic benzene- degrading mixed cultures
    • Ulrich, A.C., and Edwards, E.A. (2003) Physiological and molecular characterization of anaerobic benzene- degrading mixed cultures. Environ Microbiol 5: 92-102.
    • (2003) Environ Microbiol , vol.5 , pp. 92-102
    • Ulrich, A.C.1    Edwards, E.A.2
  • 73
    • 0022468192 scopus 로고
    • Incorporation of oxygen from water into toluene and benzene during anaerobic fermentative transformation
    • Vogel, T.M., and Grbic-Galic, D. (1986) Incorporation of oxygen from water into toluene and benzene during anaerobic fermentative transformation. Appl Environ Microbiol 52: 200-202.
    • (1986) Appl Environ Microbiol , vol.52 , pp. 200-202
    • Vogel, T.M.1    Grbic-Galic, D.2
  • 75
    • 0032078793 scopus 로고    scopus 로고
    • Rapid benzene degradation in methanogenic sediments from a petroleum- contaminated aquifer
    • Weiner, J., and Lovley, D.R. (1998) Rapid benzene degradation in methanogenic sediments from a petroleum- contaminated aquifer. Appl Environ Microbiol 64: 1937-1939.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1937-1939
    • Weiner, J.1    Lovley, D.R.2
  • 76
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintzingerode, F.V., Goebel, J.B., and Stackebrandt, E. (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213-229.
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • von Wintzingerode, F.V.1    Goebel, J.B.2    Stackebrandt, E.3
  • 77
    • 33646573004 scopus 로고    scopus 로고
    • Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: Links between benzene biodegradation and genes similar to those encoding iso- propylbenzene dioxygenases
    • Witzig, R., Junca, H., Hecht, H.J., and Pieper, D.H. (2006) Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding iso- propylbenzene dioxygenases. Appl Environ Microbiol 72: 3504-3514.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3504-3514
    • Witzig, R.1    Junca, H.2    Hecht, H.J.3    Pieper, D.H.4
  • 78
    • 27844565255 scopus 로고    scopus 로고
    • T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. Int J Syst Evol Microbiol 55: 2419-2425.
    • T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. Int J Syst Evol Microbiol 55: 2419-2425.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.