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Volumn 1, Issue 1, 2003, Pages 35-44

Cleaning up with genomics: Applying molecular biology to bioremediation

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENOME; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIUM; BIOLOGICAL MODEL; BIOREMEDIATION; CHEMISTRY; ECOLOGY; FUNGUS; GENE VECTOR; GENOME; GENOMICS; METHODOLOGY; MICROBIOLOGY; MOLECULAR BIOLOGY; PHYSIOLOGY; REVIEW;

EID: 2142763872     PISSN: 17401526     EISSN: 17401534     Source Type: Journal    
DOI: 10.1038/nrmicro731     Document Type: Article
Times cited : (441)

References (95)
  • 1
    • 0000371733 scopus 로고    scopus 로고
    • Ecology and 24. Biogeochemistry of in situ groundwater bioremediation
    • Anderson, R. T. & Lovley, D. R. Ecology and 24. biogeochemistry of in situ groundwater bioremediation. Adv. Microbial. Ecol. 15, 289-350 (1997).
    • (1997) Adv. Microbial. Ecol. , vol.15 , pp. 289-350
    • Anderson, R.T.1    Lovley, D.R.2
  • 2
    • 0003591449 scopus 로고    scopus 로고
    • ASM Press, Washington DC, USA, This book and the associated web site provide a comprehensive overview of many of the important reactions that are involved in bioremediation
    • Wackett, L. P & Hershberger, C. D. Biocatalysis and Biodegradation (ASM Press, Washington DC, USA, 2001). This book and the associated web site provide a comprehensive overview of many of the important reactions that are involved in bioremediation.
    • (2001) Biocatalysis and Biodegradation
    • Wackett, L.P.1    Hershberger, C.D.2
  • 3
    • 0035943380 scopus 로고    scopus 로고
    • Anaerobes to the rescue
    • Lovley, D. R. Anaerobes to the rescue. Science 293, 1444-1446 (2001).
    • (2001) Science , vol.293 , pp. 1444-1446
    • Lovley, D.R.1
  • 4
    • 0037127004 scopus 로고    scopus 로고
    • Electrode-reducing microorganisms harvesting energy from marine sediments
    • Bond, D. R., Holmes, D. E., Tender, L. M. & Lovley, D. R. Electrode-reducing microorganisms harvesting energy from marine sediments. Science 295, 483-485 (2002).
    • (2002) Science , vol.295 , pp. 483-485
    • Bond, D.R.1    Holmes, D.E.2    Tender, L.M.3    Lovley, D.R.4
  • 5
    • 0025890073 scopus 로고
    • Dissimilatory Fe(III) and Mn(IV) reduction
    • Lovley, D. R. Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol. Rev. 55, 259-287 (1991).
    • (1991) Microbiol. Rev. , vol.55 , pp. 259-287
    • Lovley, D.R.1
  • 6
    • 0028469073 scopus 로고
    • Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands
    • Lovley, D. R., Woodward, J. C. & Chapelle, F. H. Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands. Nature 370, 128-131 (1994).
    • (1994) Nature , vol.370 , pp. 128-131
    • Lovley, D.R.1    Woodward, J.C.2    Chapelle, F.H.3
  • 9
    • 0030832084 scopus 로고    scopus 로고
    • Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor 29. Sediment
    • Coates, J. D., Woodward, J., Allen, J., Philp, P. & Lovley, D. R. Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor 29. sediment. Appl Environ. Microbiol. 63, 3589-3593 (1997).
    • (1997) Appl Environ. Microbiol. , vol.63 , pp. 3589-3593
    • Coates, J.D.1    Woodward, J.2    Allen, J.3    Philp, P.4    Lovley, D.R.5
  • 10
    • 0034213512 scopus 로고    scopus 로고
    • Anaerobic bioremediation of benzene under sulfate-reducing conditions in a petroleum-contaminated aquifer Environ
    • Anderson, R. T. & Lovley, D. R. Anaerobic bioremediation of benzene under sulfate-reducing conditions in a petroleum-contaminated aquifer Environ. Sci. Technol. 34, 2261-2266 (2000).
    • (2000) Sci. Technol , vol.34 , pp. 2261-2266
    • Anderson, R.T.1    Lovley, D.R.2
  • 11
    • 0034437363 scopus 로고    scopus 로고
    • Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
    • Spormann, A. M. & Widdel, F. Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria. Biodegradation 11, 85-105 (2000).
    • (2000) Biodegradation , vol.11 , pp. 85-105
    • Spormann, A.M.1    Widdel, F.2
  • 12
    • 0026799502 scopus 로고
    • Microbial reductive dehalogenation
    • Mohn, W. W. & Tiedje, J. M. Microbial reductive dehalogenation. Microbiol. Rev. 56, 482-507 (1992).
    • (1992) Microbiol. Rev. , vol.56 , pp. 482-507
    • Mohn, W.W.1    Tiedje, J.M.2
  • 13
    • 0032450045 scopus 로고    scopus 로고
    • Reductive dehalogenation in the energy metabolism of anaerobic bacteria
    • Holliger, C., Wohlfarth, G. & Diekert, G. Reductive dehalogenation in the energy metabolism of anaerobic bacteria. FEMS Microbiol. Rev. 22, 383-398 (1998).
    • (1998) FEMS Microbiol. Rev. , vol.22 , pp. 383-398
    • Holliger, C.1    Wohlfarth, G.2    Diekert, G.3
  • 14
    • 0034308260 scopus 로고    scopus 로고
    • Emerging techniques for anaerobic bioremediation of contaminated environments
    • Coates, J. D. & Anderson, R. T. Emerging techniques for anaerobic bioremediation of contaminated environments. Trends Biotechnol. 18, 408-412 (2000).
    • (2000) Trends Biotechnol , vol.18 , pp. 408-412
    • Coates, J.D.1    Anderson, R.T.2
  • 16
    • 84871678622 scopus 로고    scopus 로고
    • Stimuating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium contaminated aquifer
    • (in the press)
    • Anderson, R. T. et al. Stimuating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium contaminated aquifer. Appl. Environ. Microbiol. (in the press).
    • Appl. Environ. Microbiol.
    • Anderson, R.T.1
  • 17
    • 84984769249 scopus 로고
    • Commission on Engineering and Technical Systems, National Research Council
    • National Academy Press, Washington DC, USA
    • Water Science and Technololgy Board, Commission on Engineering and Technical Systems, National Research Council. In Situ Bioremediation (National Academy Press, Washington DC, USA, 1993).
    • (1993) Situ Bioremediation
  • 18
    • 33750625786 scopus 로고    scopus 로고
    • (eds Head, I. M., Singleton, I. & Milner, M. G.), Horizon Scientific Press, Wymondham, UK
    • Rogers, S. L. & McClure, N. in Bioremediation: A criticial review (eds Head, I. M., Singleton, I. & Milner, M. G.) 27-59. (Horizon Scientific Press, Wymondham, UK, 2003).
    • (2003) Bioremediation: A Criticial Review , pp. 27-59
    • Rogers, S.L.1    McClure, N.2
  • 20
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W. & Schleifer, K.-H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169 (1995).
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 21
    • 0033952180 scopus 로고    scopus 로고
    • Environmentally relevant microorganisms
    • Watanabe, K. & Baker, P. W. Environmentally relevant microorganisms. J. Biosci. Bioeng. 89, 1-11 (2000).
    • (2000) J. Biosci. Bioeng. , vol.89 , pp. 1-11
    • Watanabe, K.1    Baker, P.W.2
  • 22
    • 0032976385 scopus 로고    scopus 로고
    • Microbial communities associated with anaerobic benzene mineralization in a petroleum-contaminated aquifer
    • Rooney-varga, J. N., Anderson, R. T., Fraga, J. L., Ringelberg, D. & Lovley, D. R. Microbial communities associated with anaerobic benzene mineralization in a petroleum-contaminated aquifer. Appl. Environ. Microbiol. 65, 3056-3063 (1999).
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3056-3063
    • Rooney-Varga, J.N.1    Erson, R.T.2    Fraga, J.L.3    Ringelberg, D.4    Lovley, D.R.5
  • 23
    • 0034042288 scopus 로고    scopus 로고
    • Stimulation of dissimilatory Fe(III) reduction results in a predominance of Geobacterspecies in a variety of sandy aquifers
    • Snoeyenbos-West, O. L., Nevin, K. P. & Lovley, D. R. Stimulation of dissimilatory Fe(III) reduction results in a predominance of Geobacterspecies in a variety of sandy aquifers. Microb. Ecol. 39, 153-167 (2000).
    • (2000) Microb. Ecol. , vol.39 , pp. 153-167
    • Snoeyenbos-West, O.L.1    Nevin, K.P.2    Lovley, D.R.3
  • 24
    • 0035491310 scopus 로고    scopus 로고
    • Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer
    • Röling, W. F. M., van Breukelen, B. M., Braster, M., Lin, B. & van verseveld, H. W. Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl. Environ. Microbiol. 67, 4619-4629 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4619-4629
    • Röling, W.F.M.1    Van Breukelen, B.M.2    Braster, M.3    Lin, B.4    Van Verseveld, H.W.5
  • 25
    • 0024530378 scopus 로고
    • Oxidation of aromatic contaminants coupled to microbial iron reduction
    • Lovley, D. R. et al. Oxidation of aromatic contaminants coupled to microbial iron reduction. Nature 339, 297-299 (1989).
    • (1989) Nature , vol.339 , pp. 297-299
    • Lovley, D.R.1
  • 26
    • 0036249528 scopus 로고    scopus 로고
    • Enrichment of Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
    • Holmes, D. E., Finneran, K. T. & Lovley, D. R. Enrichment of Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 68, 2300-2306 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2300-2306
    • Holmes, D.E.1    Finneran, K.T.2    Lovley, D.R.3
  • 27
    • 0035326426 scopus 로고    scopus 로고
    • Assessment of indigenous reductive dechlorinating potential at a TCE-contaminated site using microcosms, polymerase chain reaction analysis and site data
    • Fennell, D. E., Carrol, A. B., Gossett, J. M. & Zinder, S. H. Assessment of indigenous reductive dechlorinating potential at a TCE-contaminated site using microcosms, polymerase chain reaction analysis and site data. Environ. Sci. Technol. 35, 1830-1839 (2001).
    • (2001) Environ. Sci. Technol. , vol.35 , pp. 1830-1839
    • Fennell, D.E.1    Carrol, A.B.2    Gossett, J.M.3    Zinder, S.H.4
  • 28
    • 0037098099 scopus 로고    scopus 로고
    • Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques
    • Richardson, R. E., Bhupathiraju, V. K., Song, D. L., Goulet, T. A. & Alvarez-Cohen, L. Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environ. Sci. Technol. 36, 2652-2662 (2002).
    • (2002) Environ. Sci. Technol. , vol.36 , pp. 2652-2662
    • Richardson, R.E.1    Bhupathiraju, V.K.2    Song, D.L.3    Goulet, T.A.4    Alvarez-Cohen, L.5
  • 29
    • 0036151753 scopus 로고    scopus 로고
    • Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe
    • Hendrickson, E. R. et al. Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe. Appl. Environ. Microbiol. 68, 485-495 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 485-495
    • Hendrickson, E.R.1
  • 30
    • 0036051361 scopus 로고    scopus 로고
    • Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments
    • Hayes, L. A. & Lovley, D. R. Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments. Microb. Ecol. 43, 134-145 (2002).
    • (2002) Microb. Ecol. , vol.43 , pp. 134-145
    • Hayes, L.A.1    Lovley, D.R.2
  • 31
    • 0038559648 scopus 로고    scopus 로고
    • Naturally occurring bacteria similar to the methyl tert-butyl ether (MTBE)-degrading strain PM1 are present in MTBE-contaminated groundwater
    • Hristova, K., Gebreyesus, B., Mackay, D. & Scow, K. M. Naturally occurring bacteria similar to the methyl tert-butyl ether (MTBE)-degrading strain PM1 are present in MTBE-contaminated groundwater. Appl. Environ. Microbiol. 69, 2616-2623 (2003).
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2616-2623
    • Hristova, K.1    Gebreyesus, B.2    Mackay, D.3    Scow, K.M.4
  • 32
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N. R. A molecular view of microbial diversity and the biosphere. Science 276, 734-740 (1997).
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 33
    • 0001389608 scopus 로고    scopus 로고
    • Disparity between bacterial phylogeny and physiology — comparing 16S rRNA sequences to assess relationships can be a powerful tool, but its limitations need to be considered
    • Achenbach, L. A. & Coates, J. D. Disparity between bacterial phylogeny and physiology — comparing 16S rRNA sequences to assess relationships can be a powerful tool, but its limitations need to be considered. ASM News 66, 714-715 (2000).
    • (2000) ASM News , vol.66 , pp. 714-715
    • Achenbach, L.A.1    Coates, J.D.2
  • 34
    • 0037317620 scopus 로고    scopus 로고
    • Enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species
    • He, J., Ritalahti, K. M., Aiello, M. R. & Loffler, F. E. Enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species. Appl. Environ. Microbiol. 69, 996-1003 (2003).
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 996-1003
    • He, J.1    Ritalahti, K.M.2    Aiello, M.R.3    Loffler, F.E.4
  • 35
    • 0346319020 scopus 로고    scopus 로고
    • Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium
    • Bunge, M. et al. Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium. Nature 421, 357-360 (2003).
    • (2003) Nature , vol.421 , pp. 357-360
    • Bunge, M.1
  • 36
    • 0031941097 scopus 로고    scopus 로고
    • The application of molecular techniques in environmental biotechnology for monitoring microbial systems
    • Schneegurt, M. A. & Kulpa, C. F. Jr The application of molecular techniques in environmental biotechnology for monitoring microbial systems. Biotechnol. Appl. Biochem. 27, 73-79 (1998).
    • (1998) Biotechnol. Appl. Biochem. , vol.27 , pp. 73-79
    • Schneegurt, M.A.1    Kulpa, C.F.2
  • 37
    • 0027231336 scopus 로고
    • Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites
    • Fleming, J. T, Sanseverino, J. & Sayler, G. S. Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ. Sci. Technol. 27, 1068-1074 (1993).
    • (1993) Environ. Sci. Technol. , vol.27 , pp. 1068-1074
    • Fleming, J.T.1    Sanseverino, J.2    Sayler, G.S.3
  • 38
    • 0028116029 scopus 로고
    • MerA gene expression in aquatic environments measured by mRNA production and Hg(II)volatilization
    • Nazaret, S., Jeffrey, W. H., Saouter, E., von Haven, R. & Barkay, T. merA gene expression in aquatic environments measured by mRNA production and Hg(II)volatilization. Appl. Environ. Microbiol. 60, 4059-4065 (1994).
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 4059-4065
    • Nazaret, S.1    Jeffrey, W.H.2    Saouter, E.3    Von Haven, R.4    Barkay, T.5
  • 39
    • 0030470591 scopus 로고    scopus 로고
    • Detection of the merA gene and its expression in the environment
    • Jeffrey, W. H., Nazaret, S. & Barkay, T. Detection of the merA gene and its expression in the environment. Microbial Ecol. 32, 293-303 (1996).
    • (1996) Microbial Ecol , vol.32 , pp. 293-303
    • Jeffrey, W.H.1    Nazaret, S.2    Barkay, T.3
  • 40
    • 0036220879 scopus 로고    scopus 로고
    • Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification
    • Bakermans, C. & Madsen, E. L. Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification. J. Microbiol. Meth. 50, 75-84 (2002).
    • (2002) J. Microbiol. Meth. , vol.50 , pp. 75-84
    • Bakermans, C.1    Madsen, E.L.2
  • 43
    • 0037129202 scopus 로고    scopus 로고
    • Geobacter metallireducens accesses Fe(III) oxide by chemotaxis
    • Childers, S. E., Ciufo, S. & Lovley, D. R. Geobacter metallireducens accesses Fe(III) oxide by chemotaxis. Nature 416, 767-769 (2002).
    • (2002) Nature , vol.416 , pp. 767-769
    • Childers, S.E.1    Ciufo, S.2    Lovley, D.R.3
  • 44
    • 0036252368 scopus 로고    scopus 로고
    • Mechanisms for Fe(III) oxide reduction in sedimentary environments
    • Nevin, K. P. & Lovley, D. R. Mechanisms for Fe(III) oxide reduction in sedimentary environments. Geomicrobioi. J. 19, 141-159 (2002).
    • (2002) Geomicrobioi. J. , vol.19 , pp. 141-159
    • Nevin, K.P.1    Lovley, D.R.2
  • 45
    • 0036244691 scopus 로고    scopus 로고
    • Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans
    • Nevin, K. P. & Lovley, D. R. Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans. Appl. Environ. Microbiol. 68, 2294-2299 (2002).
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 2294-2299
    • Nevin, K.P.1    Lovley, D.R.2
  • 46
    • 0034604081 scopus 로고    scopus 로고
    • A role for excreted quinones in extracellular electron transfer
    • Newman, D. K. & K. Kolter. A role for excreted quinones in extracellular electron transfer. Nature 405, 94-97 (2000).
    • (2000) Nature , vol.405 , pp. 94-97
    • Newman, D.K.1    Kolter, K.2
  • 47
    • 84871676494 scopus 로고    scopus 로고
    • Cambridge Univ. Press, Cambridge, UK
    • Baldi, P & Hatfield, G. W. in Systems Biology 135-176 (Cambridge Univ. Press, Cambridge, UK, 2002).
    • (2002) Systems Biology , pp. 135-176
    • Baldi, P.1    Hatfield, G.W.2
  • 48
    • 0037266296 scopus 로고    scopus 로고
    • Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in
    • Lloyd, J. R. et al. Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens. Biochem. J. 369, 153-161 (2003).
    • (2003) Geobacter Sulfurreducens. Biochem. J , vol.369 , pp. 153-161
    • Lloyd, J.R.1
  • 49
    • 0037379469 scopus 로고    scopus 로고
    • OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in
    • Leang, C., Coppi, M. V. & Lovley, D. R. OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens. J. Bacteriol. 185, 2096-2103 (2003).
    • (2003) Geobacter Sulfurreducens. J. Bacteriol , vol.185 , pp. 2096-2103
    • Leang, C.1    Coppi, M.V.2    Lovley, D.R.3
  • 50
    • 0033764285 scopus 로고    scopus 로고
    • The challenges of in silico biology
    • Palsson, B. The challenges of in silico biology. Nature Biotechnol. 18, 1147-1150 (2000).
    • (2000) Nature Biotechnol. , vol.18 , pp. 1147-1150
    • Palsson, B.1
  • 51
    • 0035281870 scopus 로고    scopus 로고
    • Metabolic modelling of microbial strains in silico
    • Covert, M. W. et al. Metabolic modelling of microbial strains in silico. Trends Biochem. Sci. 26, 179-186 (2001).
    • (2001) Trends Biochem. Sci , vol.26 , pp. 179-186
    • Covert, M.W.1
  • 52
    • 0037079050 scopus 로고    scopus 로고
    • Metabolic network structure determines key aspects of functionality and regulation
    • Stelling, J., Klamt, S., Bettenbrock, K., Schuster, S. & Gilles, E. D. Metabolic network structure determines key aspects of functionality and regulation. Nature 420, 190-193 (2002).
    • (2002) Nature , vol.420 , pp. 190-193
    • Stelling, J.1    Klamt, S.2    Bettenbrock, K.3    Schuster, S.4    Gilles, E.D.5
  • 53
    • 0032552815 scopus 로고    scopus 로고
    • Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model
    • Pramanik, J. & Keasling, J. D. Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model. Biotechnol. Bioeng. 60, 230-238 (1998).
    • (1998) Biotechnol. Bioeng. , vol.60 , pp. 230-238
    • Pramanik, J.1    Keasling, J.D.2
  • 54
    • 0035125986 scopus 로고    scopus 로고
    • In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
    • Edwards, J. S., Ibarra, R. U. & Palsson, B. O. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nature Biotechnol. 19, 125-130 (2001).
    • (2001) Nature Biotechnol , vol.19 , pp. 125-130
    • Edwards, J.S.1    Ibarra, R.U.2    Palsson, B.O.3
  • 55
    • 0037079023 scopus 로고    scopus 로고
    • O. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
    • Ibarra, R. U., Edwards, J. S. & Palsson, B. O. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 420, 186-189 (2002).
    • (2002) Nature , vol.420 , pp. 186-189
    • Ibarra, R.U.1    Edwards, J.S.2    Palsson, B.3
  • 56
    • 0037008673 scopus 로고    scopus 로고
    • Transcriptional regulation in constraints-based metabolic models of Escherichia coli
    • Covert, M. W. & Palsson, B. O. Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J. Biol. Chem. 277, 28058-28064 (2002).
    • (2002) J. Biol. Chem , vol.277 , pp. 28058-28064
    • Covert, M.W.1    Palsson, B.O.2
  • 57
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    • Edwards, J. S. & Palsson, B. O. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc. Nati Acad. Sci. USA 97, 5528-5533 (2000).
    • (2000) Proc. Nati Acad. Sci. , vol.97 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.O.2
  • 58
    • 0036330798 scopus 로고    scopus 로고
    • Genome-scale metabolic model of Helicobacter pylori 26695
    • Schilling, C. H. et al. Genome-scale metabolic model of Helicobacter pylori 26695. J. Bacteriol. 184, 4582-4593 (2002).
    • (2002) J. Bacteriol. , vol.184 , pp. 4582-4593
    • Schilling, C.H.1
  • 59
    • 0033080667 scopus 로고    scopus 로고
    • Development and validation of a flux-based stoichiometric model for enhanced biological phosphorous removal
    • Pramanik, J., Trelstad, P L., Schuler, A. J., Jenkins, D. & Keasling, J. D. Development and validation of a flux-based stoichiometric model for enhanced biological phosphorous removal. Wat. Res. 33, 462-476 (1999).
    • (1999) Wat. Res. , vol.33 , pp. 462-476
    • Pramanik, J.1    Trelstad, P.L.2    Schuler, A.J.3    Jenkins, D.4    Keasling, J.D.5
  • 60
    • 0038740500 scopus 로고    scopus 로고
    • Analysis of the genetic potential and gene expression of microbial communities involved in the in situ bioremediation of uranium and harvesting electrical energy from organic matter
    • Lovley, D. R. Analysis of the genetic potential and gene expression of microbial communities involved in the in situ bioremediation of uranium and harvesting electrical energy from organic matter. Omics 6, 331-339 (2003).
    • (2003) Omics , vol.6 , pp. 331-339
    • Lovley, D.R.1
  • 61
    • 0036790017 scopus 로고    scopus 로고
    • Microbial population genomics and ecology
    • DeLong, E. F. Microbial population genomics and ecology. Curr. Opin. Microbiol. 5, 520-524 (2002).
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 520-524
    • Delong, E.F.1
  • 62
    • 35448976959 scopus 로고    scopus 로고
    • Cloning the metagenome: Culture-independent access to the diversity and functions of the uncultivated microbial world
    • Handelsman, J., Liles, M., Mann, D., Riesenfeld, C. & Goodman, R. M. Cloning the metagenome: culture-independent access to the diversity and functions of the uncultivated microbial world. Methods Microbiol. 33, 241-255 (2002).
    • (2002) Methods Microbiol , vol.33 , pp. 241-255
    • Handelsman, J.1    Liles, M.2    Mann, D.3    Riesenfeld, C.4    Goodman, R.M.5
  • 63
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Beja, O. et al. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289, 1902-1906 (2000).
    • (2000) Science , vol.289 , pp. 1902-1906
    • Beja, O.1
  • 65
    • 0036802038 scopus 로고    scopus 로고
    • First insight into the genome of an uncultivated crenarchaeote from soil
    • Quaiser, A. et al. First insight into the genome of an uncultivated crenarchaeote from soil. Environ. Microbiol. 4, 603-611 (2002).
    • (2002) Environ. Microbiol. , vol.4 , pp. 603-611
    • Quaiser, A.1
  • 66
    • 0034554741 scopus 로고    scopus 로고
    • Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
    • Beja, O. et al. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ. Microbiol. 2, 516-529 (2000).
    • (2000) Environ. Microbiol. , vol.2 , pp. 516-529
    • Beja, O.1
  • 67
    • 0031680049 scopus 로고    scopus 로고
    • Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
    • Schleper, C. et al. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 180, 5003-5009 (1998).
    • (1998) J. Bacteriol , vol.180 , pp. 5003-5009
    • Schleper, C.1
  • 68
    • 0037315779 scopus 로고    scopus 로고
    • Monitoring gene expression in mixed microbial communities by using DNA microarrays
    • Dennis, P., Edwards, E. A., Liss, S. N. & Fulthorpe, R. Monitoring gene expression in mixed microbial communities by using DNA microarrays. Appl. Environ. Microbiol. 69, 769-778 (2003).
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 769-778
    • Dennis, P.1    Edwards, E.A.2    Liss, S.N.3    Fulthorpe, R.4
  • 69
    • 0036860576 scopus 로고    scopus 로고
    • Approaches to prokaryotic biodiversity: A population genetics perspective
    • Rodriguez-Valera, F. Approaches to prokaryotic biodiversity: a population genetics perspective. Environ. Microbiol. 4, 628-633 (2002).
    • (2002) Environ. Microbiol. , vol.4 , pp. 628-633
    • Rodriguez-Valera, F.1
  • 70
    • 18844481269 scopus 로고    scopus 로고
    • Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
    • Rondon, M. R. et al. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66, 2541-2547 (2000).
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2541-2547
    • Rondon, M.R.1
  • 71
    • 0035163543 scopus 로고    scopus 로고
    • Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia
    • Entcheva, P, Liebl, W., Johann, A., Hartsch, T. & Streit, W. G. Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia. Appl. Environ. Microbiol. 67, 89-99 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 89-99
    • Entcheva, P.1    Liebl, W.2    Johann, A.3    Hartsch, T.4    Streit, W.G.5
  • 72
    • 0036358956 scopus 로고    scopus 로고
    • The future for culturing environmental organisms: A golden era ahead?
    • Zinder, S. H. The future for culturing environmental organisms: a golden era ahead? Environ. Microbiol. 4, 14-15 (2002).
    • (2002) Environ. Microbiol. , vol.4 , pp. 14-15
    • Zinder, S.H.1
  • 73
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe, M. S., Connon, S. A., Vergin, K. L. & Giovannoni, S. J. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418, 630-633 (2002).
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 74
    • 18744382447 scopus 로고    scopus 로고
    • Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
    • Sait, M., Hugenholtz, P. & Janssen, P. H. Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ. Microbiol. 4, 654-666 (2002).
    • (2002) Environ. Microbiol. , vol.4 , pp. 654-666
    • Sait, M.1    Hugenholtz, P.2    Janssen, P.H.3
  • 75
    • 0036323967 scopus 로고    scopus 로고
    • Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea
    • Bruns, A., Cypionka, H. & Overmann, J. Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea. Appl. Environ. Microbiol. 68, 3978-3987 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3978-3987
    • Bruns, A.1    Cypionka, H.2    Overmann, J.3
  • 76
    • 0037052320 scopus 로고    scopus 로고
    • Isolating 'uncultivable' microorganisms in pure culture in a simulated natural environment
    • Kaeberlein, T., Lewis, K. & Epstein, S. S. Isolating 'uncultivable' microorganisms in pure culture in a simulated natural environment. Science 296, 1127-1129 (2002).
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 77
    • 0030734782 scopus 로고    scopus 로고
    • Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH
    • Emerson, D. & Moyer, C. Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH. Appl. Environ. Microbiol. 63, 4784-4792 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4784-4792
    • Emerson, D.1    Moyer, C.2
  • 78
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon, S. A. & Giovannoni, S. J. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68, 3878-3885 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 79
    • 0037180507 scopus 로고    scopus 로고
    • Cultivating the uncultured
    • Zengler, K. et al. Cultivating the uncultured. Proc. Natl Acad. Sci. USA 99, 15681-15686 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 15681-15686
    • Zengler, K.1
  • 80
    • 0035706612 scopus 로고    scopus 로고
    • The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics
    • Hess, W. G. et al. The photosynthetic apparatus of Prochlorococcus: insights through comparative genomics. Photosynthesis Res. 70, 53-71 (2002).
    • (2002) Photosynthesis Res , vol.70 , pp. 53-71
    • Hess, W.G.1
  • 81
    • 0036135990 scopus 로고    scopus 로고
    • Comparative genomic analysis of archaeal genomic variant in a single population and in two different oceanic provinces
    • Beja, O. et al. Comparative genomic analysis of archaeal genomic variant in a single population and in two different oceanic provinces. Appl. Environ. Microbiol. 68, 3335-3345 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3335-3345
    • Beja, O.1
  • 82
    • 0037370383 scopus 로고    scopus 로고
    • MODFLOW/MT3DMS-based reactive multicomponent transport modelling
    • Prommer, H., Barry, D. A. & Zheng, C. MODFLOW/MT3DMS-based reactive multicomponent transport modelling. Groundwater 41, 247-257 (2003).
    • (2003) Groundwater , vol.41 , pp. 247-257
    • Prommer, H.1    Barry, D.A.2    Zheng, C.3
  • 83
    • 0002636519 scopus 로고    scopus 로고
    • A user's guide to PHREEQC: A computer program for speciation, reaction- path, 1D-transport, and inverse geochemical calculations
    • Parkhurst, D. L. & Appelo, C. A. J. A user's guide to PHREEQC: a computer program for speciation, reaction- path, 1D-transport, and inverse geochemical calculations. US Geological Survey Water-Resources Investigations Report 99-4259 (1999).
    • (1999) US Geological Survey Water-Resources Investigations Report , pp. 99-4259
    • Parkhurst, D.L.1    Appelo, C.A.J.2
  • 85
    • 84898842992 scopus 로고
    • Prentice Hall, Engelwood Cliffs, New Jersey
    • Fetter, C. W. Hydrogeology (Prentice Hall, Engelwood Cliffs, New Jersey, 1994).
    • (1994) Hydrogeology
    • Fetter, C.W.1
  • 86
    • 0142020492 scopus 로고    scopus 로고
    • US Final Site Observational Workplan for the UMTRA Project Old Rifle Site Report no. GJO-99-88-TAR
    • Grand Junction, Colorado, USA
    • US Department of Energy, US Final Site Observational Workplan for the UMTRA Project Old Rifle Site Report no. GJO-99-88-TAR (Grand Junction, Colorado, USA, 1999).
    • (1999)
  • 87
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • MaymoGatell, X., Chien, Y. T., Gossett, J. M. & Zinder, S. H. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276, 1568-1571 (1997).
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymogatell, X.1    Chien, Y.T.2    Gossett, J.M.3    Zinder, S.H.4
  • 88
    • 0036407322 scopus 로고    scopus 로고
    • Metabolic diversity in aromatic compound utilization by anaerobic microbes
    • Gibson, J. & Harwood, C. S. Metabolic diversity in aromatic compound utilization by anaerobic microbes. Ann. Rev. Microbiol. 56, 345-369 (2002).
    • (2002) Ann. Rev. Microbiol. , vol.56 , pp. 345-369
    • Gibson, J.1    Harwood, C.S.2
  • 89
    • 0036933705 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    • Nelson, K. E. et al. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4, 799-808 (2002).
    • (2002) Environ. Microbiol. , vol.4 , pp. 799-808
    • Nelson, K.E.1
  • 90
    • 0032710938 scopus 로고    scopus 로고
    • The ubiquity and diversity of dissimilatory (Per)chlorate-reducing bacteria
    • Coates, J. D. et al. The ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria. Appl. Environ. Microbiol. 65, 5234-5241 (1999).
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5234-5241
    • Coates, J.D.1
  • 91
    • 0035963322 scopus 로고    scopus 로고
    • Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas
    • Coates, J. D. et al. Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas. Nature 411, 1039-1043 (2001).
    • (2001) Nature , vol.411 , pp. 1039-1043
    • Coates, J.D.1
  • 92
    • 0034942588 scopus 로고    scopus 로고
    • Geographic distribution of Desulfitobacterium frappieri PCP-1 and Desulfitobacterium spp. In soils from the province of Quebec, Canada
    • Lanthier, M., Villemur, R., Lepine, F., Bisailon, J.-G. & Beaudet, R. Geographic distribution of Desulfitobacterium frappieri PCP-1 and Desulfitobacterium spp. in soils from the province of Quebec, Canada. FEMS Microbiol. Ecol. 36, 185-191 (2001).
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 185-191
    • Lanthier, M.1    Villemur, R.2    Lepine, F.3    Bisailon, J.-G.4    Beaudet, R.5
  • 93
    • 0026614445 scopus 로고
    • P Reduction of uranium by Desulfovibrio desulfuricans
    • Lovley, D. R. & Phillips, E. J. P Reduction of uranium by Desulfovibrio desulfuricans. Appl. Environ. Microbiol. 58, 850-856 (1992).
    • (1992) Appl. Environ. Microbiol , vol.58 , pp. 850-856
    • Lovley, D.R.1    Phillips, E.J.2
  • 95
    • 0035102449 scopus 로고    scopus 로고
    • Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
    • Makarova, K. S. et al. Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics. Microbiol. Mol. Biol. Rev. 65, 44-79 (2001).
    • (2001) Microbiol. Mol. Biol. Rev. , vol.65 , pp. 44-79
    • Makarova, K.S.1


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