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Volumn 68, Issue 11, 2002, Pages 5367-5373

RNA stable isotope probing, a novel means of linking microbial community function to phylogeny

Author keywords

[No Author keywords available]

Indexed keywords

BIODEGRADATION; BIOREACTORS; ECOLOGY; ELECTROPHORESIS; ISOTOPES; PHENOLS; RNA;

EID: 0036840287     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.11.5367-5373.2002     Document Type: Article
Times cited : (464)

References (35)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K.-H. Scheliefer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Scheliefer, K.-H.3
  • 3
    • 0028964829 scopus 로고
    • Taxonomic position of aromatic-degrading denitrifying Pseudomonad strains K172 and KB740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria
    • Anders, H.-J., A. Kaetzke, P. Kampfer, W. Ludwig, and G. Fuchs. 1995. Taxonomic position of aromatic-degrading denitrifying Pseudomonad strains K172 and KB740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria. Intl. J. Syst. Bacteriol. 45:327-333.
    • (1995) Intl. J. Syst. Bacteriol. , vol.45 , pp. 327-333
    • Anders, H.-J.1    Kaetzke, A.2    Kampfer, P.3    Ludwig, W.4    Fuchs, G.5
  • 4
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
    • Barnes, S. M., S. L. Takala, and C. R. Kuske. 1999. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl. Environ. Microbiol. 65:1731-1737.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1731-1737
    • Barnes, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 5
    • 2142836108 scopus 로고
    • Centrifugal methods for characterising macromolecules and their interactions
    • G. D. Birnie and D. Rickwood (ed.). Butterworths, London, United Kingdom
    • Birnie, G. D. 1978. Centrifugal methods for characterising macromolecules and their interactions, p. 95-125. In G. D. Birnie and D. Rickwood (ed.), Centrifugal Separations in Molecular and Cell Biology. Butterworths, London, United Kingdom.
    • (1978) Centrifugal Separations in Molecular and Cell Biology , pp. 95-125
    • Birnie, G.D.1
  • 6
    • 85058251354 scopus 로고    scopus 로고
    • Stable isotopes and biomarkers in microbial ecology
    • Boschker, H. T. S., and J. J. Middelburg. 2002. Stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 1334:1-12.
    • (2002) FEMS Microbiol. Ecol. , vol.1334 , pp. 1-12
    • Boschker, H.T.S.1    Middelburg, J.J.2
  • 8
    • 0033814143 scopus 로고    scopus 로고
    • Genes involved in anaerobic metabolism of phenol in the bacterium Thauera aromatica
    • Breinig, S., E. Schiltz, and G. Fuchs. 2000. Genes involved in anaerobic metabolism of phenol in the bacterium Thauera aromatica. J. Bacteriol. 182:5849-5863.
    • (2000) J. Bacteriol. , vol.182 , pp. 5849-5863
    • Breinig, S.1    Schiltz, E.2    Fuchs, G.3
  • 9
    • 0034636417 scopus 로고    scopus 로고
    • Detection and classification of atmospheric methane oxidizing bacteria in soil
    • Bull, I. D., N. R. Parekh, G. H. Hall, P. Ineson, and R. P. Evershed. 2000. Detection and classification of atmospheric methane oxidizing bacteria in soil. Nature 405:175-178.
    • (2000) Nature , vol.405 , pp. 175-178
    • Bull, I.D.1    Parekh, N.R.2    Hall, G.H.3    Ineson, P.4    Evershed, R.P.5
  • 11
    • 0035843176 scopus 로고    scopus 로고
    • An enzymic 'latch' on a global carbon store
    • Freeman, C., N. Ostle, and H. Kang. 2001. An enzymic 'latch' on a global carbon store. Nature 409:149.
    • (2001) Nature , vol.409 , pp. 149
    • Freeman, C.1    Ostle, N.2    Kang, H.3
  • 12
    • 0035215477 scopus 로고    scopus 로고
    • Linking genetic identity and function in communities of uncultured bacteria
    • Gray, N. D., and I. M. Head. 2001. Linking genetic identity and function in communities of uncultured bacteria. Environ. Microbiol. 3:481-492.
    • (2001) Environ. Microbiol. , vol.3 , pp. 481-492
    • Gray, N.D.1    Head, I.M.2
  • 13
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths, R. I., A. S. Whiteley, A. G. O'Donnell, and M. J. Bailey. 2000. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Environ. Microbiol. 66:5488-5491.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 14
    • 0023971827 scopus 로고
    • Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris
    • Harwood, C. S., and J. Gibson. 1988. Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Appl. Environ. Microbiol. 54:712-717.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 712-717
    • Harwood, C.S.1    Gibson, J.2
  • 16
    • 0025804920 scopus 로고
    • Assay for detection and enumeration of genetically engineered microorganisms which is based on the activity of a deregulated 2,4-dichlorophenoxyacetate monooxygenase
    • King, R. J., K. A. Short, and R. J. Seidler. 1991. Assay for detection and enumeration of genetically engineered microorganisms which is based on the activity of a deregulated 2,4-dichlorophenoxyacetate monooxygenase. Appl. Environ. Microbiol. 57:1790-1792.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1790-1792
    • King, R.J.1    Short, K.A.2    Seidler, R.J.3
  • 17
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (ed.). John Wiley & Sons, New York, N.Y.
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, New York, N.Y.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 18
    • 0032986790 scopus 로고    scopus 로고
    • Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology
    • Lee, N., P. H. Nielsen, K. H. Andreasen, S. Juretschko, J. L. Nielson, K.-H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65:1289-1297.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1289-1297
    • Lee, N.1    Nielsen, P.H.2    Andreasen, K.H.3    Juretschko, S.4    Nielson, J.L.5    Schleifer, K.-H.6    Wagner, M.7
  • 20
    • 0035486815 scopus 로고    scopus 로고
    • Stable hydrogen and carbon isotope fractionation during microbial toluene degradation: Mechanistic and environmental aspects
    • Morasch, B., H. H. Richnow, B. Schink, and R. U. Meckenstock. 2001. Stable hydrogen and carbon isotope fractionation during microbial toluene degradation: Mechanistic and environmental aspects. Appl. Environ. Microbiol. 67:4842-4849.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4842-4849
    • Morasch, B.1    Richnow, H.H.2    Schink, B.3    Meckenstock, R.U.4
  • 21
    • 0036200066 scopus 로고    scopus 로고
    • Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing
    • Morris, S. A., S. Radajewski, T. W. Willison, and J. C. Murrell. 2002. Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing. Appl. Environ. Microbiol. 68:1446-1453.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1446-1453
    • Morris, S.A.1    Radajewski, S.2    Willison, T.W.3    Murrell, J.C.4
  • 23
    • 0035919654 scopus 로고    scopus 로고
    • Methane-consuming Archaea revealed by directly coupled isotopic and phylogenetic analysis
    • Orphan, V. J., C. H. House, K. Hinrichs, K. D. McKeegan, and E. F. DeLong. 2001. Methane-consuming Archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293:484-486.
    • (2001) Science , vol.293 , pp. 484-486
    • Orphan, V.J.1    House, C.H.2    Hinrichs, K.3    McKeegan, K.D.4    DeLong, E.F.5
  • 25
    • 0033108165 scopus 로고    scopus 로고
    • Anaerobic utilisation of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the β-subclass of Proteobacteria
    • Rabus, R., H. Wilkes, A. Schramm, G. Harms, A. Behrends, R. Amann, and F. Widdel. 1999. Anaerobic utilisation of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the β-subclass of Proteobacteria. Environ. Microbiol. 1:145-157.
    • (1999) Environ. Microbiol. , vol.1 , pp. 145-157
    • Rabus, R.1    Wilkes, H.2    Schramm, A.3    Harms, G.4    Behrends, A.5    Amann, R.6    Widdel, F.7
  • 26
    • 0034628432 scopus 로고    scopus 로고
    • Stable-isotope probing as a tool in microbial ecology
    • Radajewski, S., P. Ineson, N. R. Parekh, and J. C. Murrell. 2000. Stable-isotope probing as a tool in microbial ecology. Nature 403:646-649.
    • (2000) Nature , vol.403 , pp. 646-649
    • Radajewski, S.1    Ineson, P.2    Parekh, N.R.3    Murrell, J.C.4
  • 27
    • 0001408114 scopus 로고
    • Changes in microbial biomass and activity in soils amended with phenolic acids
    • Sparling, G. P., B. G. Ord, and D. Vaughan. 1981. Changes in microbial biomass and activity in soils amended with phenolic acids. Soil Biol. Biochem. 13:455-460.
    • (1981) Soil Biol. Biochem. , vol.13 , pp. 455-460
    • Sparling, G.P.1    Ord, B.G.2    Vaughan, D.3
  • 28
    • 0031904685 scopus 로고    scopus 로고
    • Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants
    • Tanner, M. A., B. M. Goebel, M. A. Dojka, and N. R. Pace. 1998. Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants. Appl. Environ. Microbiol. 64:3110-3113.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3110-3113
    • Tanner, M.A.1    Goebel, B.M.2    Dojka, M.A.3    Pace, N.R.4
  • 29
    • 0023407081 scopus 로고
    • Anaerobic degradation of phenol by pure cultures of newly isolated denitrifying pseudomonads
    • Tschech, A., and G. Fuchs. 1987. Anaerobic degradation of phenol by pure cultures of newly isolated denitrifying pseudomonads. Arch. Microbiol. 148:213-217.
    • (1987) Arch. Microbiol. , vol.148 , pp. 213-217
    • Tschech, A.1    Fuchs, G.2
  • 30
    • 0031868029 scopus 로고    scopus 로고
    • Isolation and characterisation of phenol-degrading denitrifying bacteria
    • VanSchie, P., and L. Y. Young. 1998. Isolation and characterisation of phenol-degrading denitrifying bacteria. Appl. Environ. Microbiol. 64:2432-2438.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2432-2438
    • VanSchie, P.1    Young, L.Y.2
  • 31
    • 0031734089 scopus 로고    scopus 로고
    • Molecular detection, isolation, and physiological characterisation of functionally dominant phenol-degrading bacteria in activated sludge
    • Watanabe, K., M. Teramoto, H. Futamata, and S. Harayama. 1998. Molecular detection, isolation, and physiological characterisation of functionally dominant phenol-degrading bacteria in activated sludge. Appl. Environ. Microbiol. 64:4396-4402.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4396-4402
    • Watanabe, K.1    Teramoto, M.2    Futamata, H.3    Harayama, S.4
  • 33
    • 0034084123 scopus 로고    scopus 로고
    • Bacterial community structure and physiological state within an industrial phenol bioremediation system
    • Whiteley, A., and M. J. Bailey. 2000. Bacterial community structure and physiological state within an industrial phenol bioremediation system. Appl. Environ. Microbiol. 66:2400-2407.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2400-2407
    • Whiteley, A.1    Bailey, M.J.2
  • 34
    • 0035129968 scopus 로고    scopus 로고
    • Ecological and physiological analyses of Pseudomonad species within a phenol remediation system
    • Whiteley, A. W., S. Wiles, A. K. Lilley, J. Philp, and M. J. Bailey. 2000. Ecological and physiological analyses of Pseudomonad species within a phenol remediation system. J. Microbiol. Methods. 44:79-88.
    • (2000) J. Microbiol. Methods , vol.44 , pp. 79-88
    • Whiteley, A.W.1    Wiles, S.2    Lilley, A.K.3    Philp, J.4    Bailey, M.J.5
  • 35
    • 0033506836 scopus 로고    scopus 로고
    • Microbial degradation of nitrobenzene and mono-nitrophenol by bacteria enriched from municipal activated sludge
    • Zhao, J. S., and O. P. Ward. 1999. Microbial degradation of nitrobenzene and mono-nitrophenol by bacteria enriched from municipal activated sludge. Can. J. Microbiol. 45:427-432.
    • (1999) Can. J. Microbiol. , vol.45 , pp. 427-432
    • Zhao, J.S.1    Ward, O.P.2


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