Production of hemicellulolytic enzymes for hydrolysis of lignocellulosic biomass

Biofuels

Volumn , Issue , 2011, Pages 203-228

  Manju, Sharma ^a   Singh Chadha, Bhupinder ^a  

^a GURU NANAK DEV UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84871802433     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-385099-7.00009-7     Document Type: Chapter

References (185)

1. Adav S.S., Li A.A., Manavalan A., Punt P., Sze S.K. Quantitative iTRAQ secretome analysis of Aspergillus niger reveals novel hydrolytic enzymes. J. Proteome Res. 2010, 9:3932-3940.
2. Albertsson A.C., Voepel J., Edlund U., Dahlman O., Lindblad M.S.D. Design of Renewable Hydrogel Release Systems from Fiberboard Mill Wastewater. Biomacromolecules 2010, 11:1406-1411.
3. Ali M.K., Hayashi H., Karita S., Goto M., Kimura T., Sakka K., et al. Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to Xylan hydrolysis. Biosci. Biotechnol. Biochem 2001, 65:41-47.
4. Allgaier M., Reddy A., Park J.I., Ivanova N., D'haeseleer P., Lowry S., et al. Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS ONE 2010, 5:e8812. doi:10.1371/journal.pone.0008812.
5. Andrade S.V., Polizeli M.L.T.M., Terenzi H.F., Jorge J.A. Effect of carbon source on the biochemical properties of the β-xylosidase produced by Aspergillus versicolor. Process. Biochem. 2004, 39:1931-1938.
6. Antoine A.A., Jacqueline D., Thonart P. Xylanase production by Penicillium canescens on soya oil cake in solid state fermentation. Appl. Biochem. Biotechnol. 2010, 160:50-62.
7. Araki R., Ali M.K., Sakka M., Kimura T., Sakka K., Ohmiya K. Essential role of the family-22 carbohydrate-binding modules for β-1,3-1,4-glucanase activity of Clostridium stercorarium Xyn10B. FEBS Lett. 2004, 561:155-158.
8. Arora N., Banerjee A.K., Mutyala S., Murty U.S. Comparative characterization of commercially important xylanase enzymes. Bioinformation 2009, 3:446-453.
9. Arsovski A.A., Popma T.M., Haughn G.W., Carpita N.C., McCann M.C., Western T.L. AtBXL1 Encodes a Bifunctional β-d-Xylosidase/α-l-Arabinofuranosidase Required for Pectic Arabinan Modification in Arabidopsis Mucilage Secretory Cells1[C][W][OA]. Plant Physiol. 2009, 150:1219-1234.
10. Badhan A.K., Chadha B.S., Sonia K.G., Saini H.S., Bhat M.K. Functionally diverse multiple xylanases of thermophilic fungus Myceliophthora sp. IMI 387099. Enzyme Microb. Technol. 2004, 35:460-466.
11. Badhan A.K., Chadha B.S., Saini H.S. Purification of the alkalophilic xylanases from Myceliophthora sp. IMI 387099 using cellulose-binding domain as an affinity tag. World. J. Microbiol. Biotechnol. 2007, 24:973-981.
12. Bai Y., Wang J., Yang P., Shi P., Luo H., Meng K., et al. A new xylanase from thermoacidophilic Alicyclobacillus sp. A4 with broad range pH activity and pH stability. J. Ind. Microbiol. Biotechnol. 2010, 37:187-194.
13. Bailey M., Biely P., Poutanen K. Interlaboratory testing methods for assay of xylanase activity. J. Biotechnol. 1992, 23:257-270.
14. Bedford M.R., Classen H.L. The influence of dietary xylanase on intestinal viscosity and molecular weight distribution of carbohydrates in rye-fed broiler chick. Xylan and Xylanases 1992, 361-370. Elsevier, Amsterdam. J. Visser, G. Beldman, M.A.K. Van Somerren, A.G.J. Voragen (Eds.).
15. Beg Q.K., Kapoor M., Mahajan L., Hoondal G.S. Microbial xylanases and their industrial applications: a review. Appl. Microbiol. Biotechnol. 2001, 56:326-338.
16. Benoit I., Danchin E.G.J., Bleichrodt R.J., De Vries R.P. Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity. Biotechnol. Lett. 2008, 30:387-396.
17. Biely P., Vršanská M., Tenkanen M., Kluepfel D. Endo-β-1-4-xylanase families: differences in catalytic properties. J. Biotechnol. 1997, 57:151-166.
18. Biely P., de Vries R.P., Vrsanska M., Visser J. Inverting character of α-glucuronidase A from Aspergillus tubingensis. Biochim. Biophys. Acta 2000, 1474:360-364.
19. Black G.W., Rixon J.E., Clarke J.H., Hazlewood G.P., Theodorou M.K., Morris P., et al. Evidence that linker sequences and cellulose-binding domains enhance the activity of hemicellulases against complex substrates. Biochem. J. 1996, 319:515-525.
20. Blum D.L., Li X.L., Chen H., Ljungdahl L.G. Characterization of an acetyl xylan esterase from the anaerobic fungus Orpinomyces sp. strain PC-2. Appl. Environ. Microbiol 1999, 65:3990-3995.
21. Bourgois T.M., Van Craeyveld V., Van Campenhout S., Courtin C.M., Delcour J.A., Robben J., et al. Recombinant expression and characterization of XynD from Bacillus subtilis subsp. Subtilis ATCC 6051: a GH 43 arabinoxylan arabinofuranohydrolase. Appl. Microbiol. Biotechnol. 2007, 75:1309-1317.
22. Bravman T., Mechaly A., Shulami S., Belakhov V., Baasov T., Shoham G., et al. Glutamic acid 160 is the acid-base catalyst of β-xylosidase from Bacillus stearothermophilus T-6: a family 39 glycoside hydrolase. FEBS Lett. 2001, 495:115-119.
23. Bravman T., Zolotnitsky G., Shulami S., Belakhov V., Solomon D., Baasov T., et al. Stereochemistry of family 52 glycosyl hydrolases: β-xylosidase from Bacillus stearothermophilus T-6 is a retaining enzyme. FEBS Lett. 2001, 495:39-43.
24. Brennan Y.L., Callen W.L., Christoffersen L., Dupree P., Goubet F., Healey S., et al. Unusual microbial xylanases from insect guts. Appl. Environ. Microbiol. 2004, 70:3609-3617.
25. Brunzelle J.S., Jordan D.B., McCaslin D.R., Olczak A., Wawrzak Z. Structure of the two-subsite beta-d-xylosidase from Selenomonas ruminantium in complex with 1,3 bis[tris(hydroxymethyl) methylamino]propane. Arch. Biochem. Biophys. 2008, 474:157-166.
26. Cantarel B.L., Coutinho P.M., Rancurel C., Bernard T., Lombard V., Henrissat B. The carbohydrate-active enzymes database (Cazy): an expert resource for glycogenomics. Nucleic. Acids Res. 2009, 37(Database issue):D233-D238.
27. Carapito R., Imberty A., Jeltsch J.M., Byrns S.C., Tam P.H., Lowary T.L., et al. Molecular basis of arabinobio-hydrolase activity in phytopathogenic fungi: crystal structure and catalytic mechanism of Fusarium graminearum GH93 exo-α-l-Arabinanase. J. Biol. Chem. 2009, 284:12285-12296. http://www.begin_of_the_skype_highlighting.
28. Chadha B.S., Badhan A.K., Mellon F., Bhat M.K. Two endoxylanases active and stable at alkaline pH from the newly isolated thermophilic fungus, Myceliophthora sp. IMI 387099. J. Biotechnol. 2004, 109:227-237.
29. Charnock S.J., Bolam D.N., Turkenberg J.P., Gilbert H.J., Ferreira L.M.A., Davies G.J., et al. The X6 "thermostabilizing" domains of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain. Biochem 2000, 39:5013-5021.
30. Chavez R., Schachter K., Navarro C., Peirano A., Aguirre C., Bull P., et al. Differences in expression of two endoxylanase genes (xynA and xynB) from Penicillium purpurogenum. Gene 2002, 293:161-168.
31. Chen X., Lu W., Cao Y., Li D. Prokaryotic expression, purification and characterization of Aspergillus sulphureus beta mannanase and site-directed mutagenesis of the catalytic residues. Appl. Biochem. Biotechnol. 2008, 149:139-144.
32. Cheng H.L., Tsai C.Y., Chen H.J., Yang S.S., Chen Y.C. The identification, purification, and characterization of STXF10 expressed in Streptomyces thermonitrificans NTU-88. Appl. Microbiol. Biotechnol. 2009, 82:681-689.
33. Collins T., Meuwis M., Stals I., Claessens M., Feller G., Gerday C. A novel family 8 xylanase: functional and physio-chemical characterization. J. Biol. Chem. 2002, 277:35133-35139.
34. Collins T., Gerday C., Feller G. Xylanases, xylanase families and extremophilic xylanases. FEMS Micbobiol. Rev. 2005, 29:3-23.
35. Contreras L.M., Gomez J., Prieto J., Clemente-Jimenez J.M., Las Heras-Vazquez F.J., Rodriguez-Vico F., et al. The family 52 β-xylosidase from Geobacillus stearothermophilus is a dimer: structural and biophysical characterization of a glycoside hydrolase. Biochemica et Biophysica Acta 2008, 1784:1924-1934.
36. Corral O.C., Ortega F.V. Xylanases. Advances in Agricultural and Food Biotechnology 2006, 305-322. Research Signpost. R.G. González, I.T. Pacheco (Eds.).
37. Coutinho P.M., Henrissat B. Carbohydrate-active enzymes: an integrated database approach. Recent Advances in Carbohydrate Bioengineering 1999, 3-12. Royal Society of Chemistry, Cambridge. H.J. Gilbert, G.J. Davies, B. Henrissat, B. Svensson (Eds.).
38. T xylanase XynT-the first family 11 endoxylanase from rumen Butyriovibrio-related bacteria. Enzyme Microb. Technol. 2004, 34:219-227.
39. Craeyveld V.V., Swennen K., Dornez E., Wiele T.V., Marzorati M., Verstraete W., et al. Structurally different wheat derived arabinoxylooligosaccharides have different prebiotic and fermentation properties in rats. J. Nutr. 2008, 138:2348-2355.
40. Crepin V.F., Faulds C.B., Connerton I.F. Functional classification of the microbial feruloyl esterases. Appl. Microbiol. Biotechnol. 2004, 63:647-652.
41. Cuong D.B., Thu D.T., Berrin J.G., Haltrich D., Anh T.K., Sigoillot J.C., et al. Cloning, expression in Pichia pastoris, and characterization of a thermostable GH5 mannan endo-1,4-β-mannosidase from Aspergillus niger BK01. Microbial Cell Fact. 2009, 8:59. doi:10.1186/1475-2859-8-59.
42. de Graaff L.H., Visser J., van den Broeck H.C., Strozyk F., Kormelink F.J.M., Boonman J.C. Method to alter the properties of acetylated xylan 2000, United States Patent 6,010,892.
43. Dhawan S., Kaur J. Microbial mannanases: an overview of production and applications. Crit. Rev. Biotechnol. 2007, 27:197-216.
44. Dhiman S.S., Sharma J., Battan B. Industrial aspects and future prospects of microbial xylanases: a review. Bioresources 2008, 3:1377-1402.
45. Dodd D., Cann I.K.O. Enzymatic deconstruction of xylan for biofuel production. GCB Bioenerg. 2009, 1:2-17.
46. DOE Report Bioenergy Research centres. An Overview of the Science 2009, DOE/SC-01166.
47. Durand R., Rascle C., Fevre M. Molecular characterization of xyn3, a member of the endoxylanase multigene family of the rumen anaerobic fungus Neocalimastix frontalis. Curr. Genet 1996, 30:531-540.
48. Emalfarb M.A., Burlingame R.P., Olson P.T., Sinitsyn A.P., Parriche M., Bousson J.C., et al. Transformation system in the field of filamentous fungal hosts 2003, U.S. Patent No. 6,573,086.
49. Eneyaskaya E.V., Brumer H., Backinovsky L.V., Ivanen D.R., Kulminskaya A.A., Shabalin K.A., et al. Enzymatic synthesis of β-xylanase substrates: transglycosylation reactions of the β-xylosidase from Aspergillus sp. Carbohydr. Res. 2003, 338:313-325.
50. Fattah A.F.A., Hashem A.M., Ismail A.M.S., El-Refai M.A. Purification and Some Properties of a-mannanase from Aspergillus Oryzae NRRL 3448. J. Appl. Sci. Res. 2009, 5:2067-2073.
51. Faure D. The family-3 glycoside hydrolases: from housekeeping functions to host-microbe interactions. Appl. Environ. Microbiol. 2002, 68:1485-1490.
52. Ferreira L.M.A., Wood T.M., Williamson G., Faulds C., Hazlewood G.P., Black G.W., et al. A modular esterase from Pseudomonas fluorescens subsp. Cellulosa contains a non-catalytic cellulose-binding domain. Biochem. J. 1993, 294:349-355.
53. Filonova L., Gunnarsson L.C., Daniel G., Ohlin M. Synthetic xylan-binding modules for mapping of pulp fibres and wood sections. BMC Plant Biol. 2007, 7:54. doi:10.1186/1471-2229-7-54.
54. Fritz M., Ravanal M.C., Braet C., Eyzaguirre J. A family 51 α-l-arabinofuranosidase from Penicillium purpurogenum: purification, properties and amino acid sequence. Mycol. Res. 2008, 112:933-942.
55. Fujimoto Z., Kuno A., Kaneko S., Yoshida S., Kobayashi H., Kusakabe I., et al. Crystal structure of Streptomyces olivaceoviridis E-86 β-xylanase containing xylan-binding domain. J. Mol. Biol. 2000, 300:575-585.
56. Gallardo O., Fernandez M.F., Valls C., Valenzuela S.V., Roncero M.B., Diaz P., et al. Characterization of a family GhH5 xylanase with activity on neutral oligosaccharides and evaluation as a pulp bleaching aid. Appl. Environ. Microbiol. 2010, 76:6290-6294.
57. Garcia-Conesa M.T., Crepin V.F., Goldson A.J., Williamson G., Cummings N.J., Connerton I.F., et al. The feruloyl esterase systems of Talaromyces stipitatus: production of three discrete feruloyl esterases, including a novel enzyme, TsFaeC, with a broad specificity. J. Biotechnol. 2005, 108:227-241.
58. Ge Y., Antoulinakis E.G., Gee K.R., Johnson I. An ultrasensitive, continuous assay for xylanase using the fluorogenic substrate 6,8-difluoro-4-methylumbelliferyl β-d-xylobioside. Analytical. Biochem. 2007, 362:63-68.
59. Ghatora S.K., Chadha B.S., Saini H.S., Bhat M.K., Faulds C.B. Diversity of plant cell wall esterases in thermophilic and thermotolerant fungi. J. Biotechnol. 2006, 125:434-445.
60. Gilbert H.J., Hazlewood G.P., Laurie J.I., Orpin C.G., Xue G.P. Homologous catalytic domains in a rumen fungal xylanase: evidence for gene duplication and prokaryotic origin. Mol. Microbiol. 1992, 6:2065-2072.
61. Gimbert I.H., Margoet A., Dolla A., Jan G., Molle D., Lignon S., et al. Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains. Biotechnol. Biofuels 2008, 1:18. doi:10.1186/1754-6834-1-18.
62. Girio F.M., Fonseca C., Carvalheiro F., Duarte L.C., Maeques S., Lukasik R.B. Hemicelluloses for fuel ethanol: a review. Bioresour. Technol. 2010, 101:4775-4800.
63. Gomes J., Gomes I., Terler K., Gubala N., Ditzelmuller G., Steiner W. Optimization of culture medium and conditions for α-l-arabinofuranosidase production by the extreme thermophilic eubacterium Rhodothermus marinus. Enzyme. Microb. Technol. 2000, 27:414-419.
64. Gosalbes M.J., Pérez-Gonzalez J.A., Gonzalez R., Navarro A. Two β-glycanase genes are clustered in Bacillus polymyxa: molecular cloning, expression, and sequence analysis of genes encoding a xylanase and an endo-β-(1,3)-(1,4)-glucanase. J. Biotechnol. 1991, 173:7705-7710.
65. Gregorio A.D., Mandalari G., Arena N., Nucita F., Tripodo M.M., Curto R.B.L. SCP and crude pectinase production by slurry-state fermentation of lemon pulps. Bioresour. Technol. 2002, 83:89-94.
66. Gruber K., Klintschar G., Hayn M., Schlacher A., Steiner W., Kratky C. Thermophilic xylanase from Thermomyces lanuginosus: high resolution X-ray structure and modelling studies. Biochem 1998, 37:13475-13485.
67. Guerfali M., Chaabouni M., Gargouri A., Belghith H. Improvement of α-l-arabinofuranosidase production by Talaromyces thermophilus and agro-industrial residues saccharification. Appl. Microbiol. Biotechnol. 2010, 85:1361-1372.
68. Haapala R., Linko S., Parkkinen E., Suominen P. Production of endo-1,4-β-glucanase and xylanase by Trichoderma reesei immobilized on polyurethane foam. Biotechnol. Techn. 1994, 8:401-406.
69. Hachem M.A., Karlsson E.N., Bartonek-Roxa E., Raghothama S., Simpson P.J., Gilbert H.J., et al. Carbohydrate-binding modules from a thermostable Rodothermus marinus xylanase: cloning, expression and binding studies. Biochem. J. 2000, 345:53-60.
70. Harris G.W., Jenkins J.A., Connerton I., Pikersgill R.W. Refined crystal structure of the catalytic domain of xylanase A from Psuedomonas fluorescens at 1.8 A resolution. Acta Crystallogr. 1996, 52:393-401.
71. Hashimotoa H., Tamaib Y., Okazakib F., Tamarub Y., Shimizua T., Arakib T., et al. The first crystal structure of a family 31 carbohydrate-binding module with affinity to β-1,3-xylan. FEBS Lett. 2005, 579:4324-4328.
72. Hinz S.W.A., Pouvreau L., Joosten R., Bartels J., Jonathan M.C., Wery J., et al. Hemicellulase production in Chrysosporium lucknowense C1. J. Cereal. Sci. 2009, 50:318-323.
73. Ichinose H., Yoshida M., Fujimoto Z., Kaneko S. Characterization of a modular enzyme of exo-1,5-α-l-arabinofuranosidase and arabinan binding module from Streptomyces avermitilis NBRC14893. Appl. Microbiol. Biotechnol. 2008, 80:399-408.
74. Inacio J.S., Correia I.L., Nogueira I.S. Two distinct arabinofuranosidases contribute to arabino-oligosaccharide degradation in Bacillus subtilis. Microbiol 2008, 154:2719-2729.
75. Ito T., Yokoyama E., Sato H., Ujita M., Funaguma T., Furukawa K., et al. Xylosidases associated with the cell surface of Penicillium herquei IFO 4674. J. Biosci. Bioeng. 2003, 96:354-359.
76. Izydorczyk M.S., Dexter J.E. Barley β-glucans and arabinoxylans: molecular structure, physicochemical properties, and uses in food products. A review. Food. Res. Int. 2008, 41:850-868.
77. Janis J., Hakanpaa J., Hakulinen N., Ibatullin F.M., Hoxha A., Derrick P.J., et al. Determination of thioxylo-oligosaccharide binding to family 11 xylanase using electrospray ionization fourier transform ion cyclotron resonance mass spectrometry and X-ray crystallography. FEBS. J 2005, 272:2317-2333.
78. Jatinder K., Chadha B.S., Saini H.S. Optimization of medium components for production of cellulases by Melanocarpus sp. MTCC 3922 under solid-state fermentation. World J. Microbiol. Biotechnol. 2006, 22:15-22.
79. Jatinder K., Chadha B.S., Saini H.S. Optimization of culture conditions for production of cellulases and xylanases by Scytalidium thermophilum using response surface methodology. World. J. Microbiol. Biotechnol 2006, 22:169-176.
80. Javier P.F.I., Oscar G., Sanz-Aparicio J., Díaz P. Xylanases: molecular properties and applications. Ind. Enzymes. 2007, Section A:65-82.
81. Jordan D.B., Li X.L., Dunlap C.A., Whitehead T.R., Cotta M.A. Structure-function relationships of a catalytically efficient beta-d-xylosidase. Appl. Biochem. Biotechnol. 2007, 141:51-76.
82. Jorgensen H., Morkeberg A., Kristian B.R.K., Olsson L. Production of cellulases and hemicellulases by three Penicillium species: effect of substrate and evaluation of cellulose adsorption by capillary electrophoresis. Enzyme Microb. Technol. 2005, 36:42-48.
83. Kacagan M., Canakci S., Inan K., Colak D.N., Belduz A.O. Characterization of a xylanase from thermophilic strain of Anoxybacillus pushchioensis A8 xylanase. Biologia 2008, 63:599-606.
84. Kamm B., Kamm M. Biorefinery systems. Chem. Biochem. Eng. Q. 2004, 18:1-6.
85. Khandeparker R., Numan M.T.H., Mukherjee B., Satwekar A., Bhosle N.B. Purification and characterization of α-l-arabinofuranosidase from Arthrobacter sp. MTCC 5214 in solid-state fermentation. Process Biochem. 2008, 43:707-712.
86. Kim S.J., Lee C.M., Han B.R., Kim M.Y., Yeo Y.S., Yoon S.H., et al. Characterization of a gene encoding cellulase from uncultured soil bacteria FEMS. Microbiol. Lett. 2008, 282:44-51.
87. Kim D.Y., Han M.K., Oh H.W., Park D.S., Kim S.J., Lee S.G., et al. Catalytic properties of a GH10 endo-β-1,4xylanase from Streptomyces thermocarboxydus Hy-15 isolated from the gut of Eisenia fetida. J. Mol. Catalysis. B: Enz. 2010, 62:32-39.
88. Kittura F.S., Mangalaa S.L., Rus'da A.A., Kitaokaa M., Tsujibob H., Hayashia K. Fusion of family 2b carbohydrate-binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan. FEBS Lett. 2003, 549:147-151.
89. Kleywegt G.J., Zou J.Y., Divne C., Davies G.J., Sinning I., Stahlberg J., et al. The crystal structure of the catalytic core of endoglucanase I from Trichoderma reesei at 3.6 Å resolution, and a comparison with related enzymes. J. Mol. Biol. 1997, 272:383-397.
90. Knob A., Carmona E.C. Cell associated acid β-xylosidase production by Penicillium sclerotiorum. New Biotechnol. 2009, 26:60-67.
91. Kolenova K., Vrsanska M., Biely P. Mode of action of endo-β-1,4-xylanases of families 10 and 11 on acidic xylooligosaccharides. J. Biotechnol. 2006, 121:338-345.
92. Kristufek D., Zeilinger S., Kubicek C.P. Regulation of β-xylosidase formation by xylose in Trichoderma reesei. Appl. Microbiol. Biotechnol. 1995, 42:413-417.
93. Lagaert S., Belien T., Volckaert G. Plant cell walls: protecting the barrier from degradation by microbial enzymes. Semin. Cell Dev. Biol. 2009, 20:1064-1073.
94. Laine C. Structures of hemicelluloses and pectins in wood and pulp 2005, Ph.D. Thesis., Helsinki University of Technology, KCL, Espoo, Finland.
95. Lakshmi G.S., Rao C.S., Rao R.S., Hobbs P.J., Prakasham R.S. Enhanced production of xylanase by a newly isolated Aspergillus terreus under solid state fermentation using palm industrial waste: a statistical optimization. Biochem. Eng. J. 2009, 48:51-57.
96. Larson S.B., Day J., Barba de la Rosa A.P., Keen N.T., McPherson A. First crystallographic structure of a xylanase from glycoside hydrolase family 5: implications for catalysis. Biochem 2003, 42:8411-8422.
97. Lazaridou A., Biliaderis C.G., Izydorczyk M.S. Cereal β-glucans: structures, physical properties, and physiological functions. Functional Food Carbohydrates 2007, 1-72. CRC Press, Taylor & Francis Group, Boca Raton. C.G. Biliaderis, M.S. Izydorczyk (Eds.).
98. Leite R.S., Daniela A.B., Eduardo D.S., Denis S., Eleni G., Roberto S. Production of cellulolytic and hemicellulolytic enzymes from Aureobasidium pulluans on solid state fermentation. Appl. Biochem. Biotechnol. 2007, 137-140:281-288.
99. Li Y.N., Meng K., Wang Y.R., Yao B. A beta-mannanase from Bacillus subtilis B 36: purification, properties, sequencing, gene cloning and expression in Escherichia coli. Z. Naturforsch C 2006, 61:840-846.
100. Li X.L., Skory C.D., Cotta M.A., Puchart V., Biely P. Novel family of carbohydrate esterases, based on identification of the Hypocrea jecorina acetyl esterase gene. Appl. Environ. Microbiol. 2008, 74:7482-7489.
101. Lopez M., Bizot H., Chambat G., Marais M.F., Zykwinska A., Ralet M.C., et al. Enthalpic studies of xyloglucan-cellulose interactions. Biomacromolecules 2010, 11:1417-1428.
102. Maalej I., Behlaj I., Masmoudi N.F., Belghith H. Highly thermostable xylanase of the thermophilic fungus Talaromyces thermophilus: purification and characterization. Appl. Biochem. Biotechnol. 2009, 158:200-212.
103. Magalhaes P.O., Milagres A.M.F. Biochemical properties of a β-mannanase and a β-xylanase produced by Ceriporiopsis subvermispora during biopulping conditions. Int. Biodegrad. 2009, 63:191-195.
104. Maheshwari R., Bhardwaj G., Bhat M.K. Thermophilic fungi: their physiology and enzymes. Microbiol. Mol. Biol. Rev. 2000, 64:461-488.
105. Mai V., Wiegel J., Lorenz W.W. Cloning, sequencing, and characterization of the bifunctional xylosidase-arabinosidase from the anaerobic thermophile Thermoanaerobacter ethanolicus. Gene 2000, 247:137-143.
106. Mangala S.L., Kittur F.S., Nishimoto M., Sakka K., Ohmiya K., Kitaoka M., et al. Fusion of family VI cellulose binding domains to Bacillus halodurans xylanase increases its catalytic activity and substrate-binding capacity to insoluble xylan. J. Mol. Catalysis B Enz. 2003, 21:221-230.
107. Martinez D., Challacombea J., Morgensternc I., Hibbettc D., Schmoll M., Kubicek C.P. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. PNAS 2009, 106:1954-1959.
108. Martin K., Mc Dougall B.M., McIlroy S., Chen J., Seviour R.J. Biochemistry and molecular biology of exocellular fungal β-(1,3)- and β-(1,6)-glucanases. FEMS. Microbiol. Rev. 2007, 31:168-192.
109. Maslen S.L., Goubet F., Adam A., Dupree P., Stephens E. Structural elucidation of arabinoxylan isomers by normal phase HPLC-MALDI-TOF/TOF-MS/MS. Carbohydr. Res. 2007, 342:724-735.
110. Mastihuba V., Kremnicky L., Mastihubova M., Willet J.L., Cote G.L. A spectrophotometric assay for feruloyl esterases. Anal. Biochem. 2002, 309:96-101.
111. Mastihubova M., Biely P. Preparation of regioselectively feruloylated p-nitrophenyl α-l-arabinofuranosides and β-d-xylopyranosides-convenient substrates for study of feruloyl esterase specificity. Carbohydr. Res. 2010, 345:1094-1098.
112. Matsumura S., Sakiyama K., Toshima K. Preparation of octyl-β-d-xylobioside and xyloside by xylanase catalyzed direct transglycosylation reaction of xylan and octanol. Biotechnol. Lett. 1999, 21:17-22.
113. Medina G.N., Carvajal-Millan E., Rascon-Chu A., Marquez-Escalante J.A., Guerrero V., Salas-Munoz E. Feruloylated arabinoxylans and arabinoxylan gels: structure, sources and applications. Phytochem. Rev. 2010, 9:111-120.
114. Meshram M., Kulkarni A., Jayaraman V.K., Kulkarni B.D., Lele S.S. Optimal xylanase production using Penicillium janthinellum NCIM 1169: a model based approach. Biochem. Eng. J. 2008, 40:348-356.
115. Miyanaga A., Koseki T., Miwa Y., Mese Y., Nakamura S., Kuno A., et al. The family 42 carbohydrate-binding module of family 54 α-l-arabinofuranosidase specifically binds the arabinofuranose side chain of hemicellulose. Biochem. J. 2006, 399:503-511.
116. Muzard M., Aubry N., Royon R.P., O'Donohue M., remond C. Evaluation of the transglycosylation activities of a GH 39 β-d-xylosidase for the synthesis of xylose-based glycosides. J. Mol. Catalysis B Enz. 2009, 58:1-5.
117. Naessens M., Vandamme E.J. Multiple forms of microbial enzymes. Biotechnol. Lett. 2003, 25:1119-1124.
118. Nagendran S., Hallen-Adams H.E., Paper J.M., Aslam N., Walton J.D. Reduced genomic potential for secreted plant cell-wall-degrading enzymes in the ectomycorrhizal fungus Amanita bisporigera, based on the secretome of Trichoderma reesei. Fungal Genet. Biol. 2009, 46:427-435.
119. Nam K.H., Kim S.J., Hwang K.Y. Crystal structure of a Celm2, bifunctional glucanase-xylanase protein from a metagenome library. Biochem. Biophys. Res. Commun. 2009, 383:183-186.
120. Narang S., Sahai V., Bisaria V.S. Optimization of xylanase production by Melanocarpus albomyces IIS68 in solid state fermentation using response surface methodology. J. Biosci. Bioengg 2001, 91:425-427.
121. Oda K., Kakizono D., Yamada O. Proteomic analysis of extracellular protein from Aspergillus oryzae grown under submerged and solid state culture conditions. Appl. Environ. Microbiol. 2006, 72:885-889.
122. Ohara H. Biorefinery. Appl. Microbiol. Biotechnol. 2003, 62:474-477.
123. Ohta K., Fujimoto H., Fujii S., Wakiyama M. Cell-associated β-xylosidase from Aureobasidium pullulans ATCC 20524: purification, properties, and characterization of the encoding gene. J. Biosci. Bioeng 2010, 110:152-157.
124. Panagiotou G., Topakas E., Economou L., Kekos D., Macris B.J., Christakopoulos P. Induction, purification, and characterization of two extracellular α-l-arabinofuranosidases from Fusarium oxysporum. Can. J. Microbiol. 2003, 49:639-644.
125. Pandey A., Carlos R.S., Mitchell D. New development in solid-state fermentation: bioprocess and products. Process Biochem. 2000, 35:1153-1169.
126. Paradis F.W., Zhu H., Krell P.J., Phillips J.P., Forsberg C.W. The xynC gene from Fibrobacter succinogenes S85 codes for a xylanase with two similar catalytic domains. J. Bacteriol. 1993, 175:7666-7672.
127. Pason P., Kyu K.L., Ratanakhanokchai K. Paenibacillus curdlanolyticus strain B-6 xylanolytic-cellulolytic enzyme system that degrades insoluble polysaccharides. Appl. Environ. Microbiol. 2006, 72:2483-2490.
128. Pastel H., Virkki L., Harju E., Toumainen P., Tenkanen M. Presence of 1→3 linked 2-O-β-d-xylopyranosyl-α-l-arabinofuranosyl side chains in cereal arabinoxylan. Carbohydr Res. 2009, 344:2480-2488.
129. Peng F., Ren J.L., Xu F., Bian J., Peng P., Sun R.C. Fractionation of alkali-solubilized hemicelluloses from delignified Populus gansuensis: structure and properties. J. Agric. Food Chem. 2010, 58:5743-5750.
130. Pinto P.C., Evtuguin D.V., Pascoal Neto C. Structure of hardwood glucuronoxylans: modifications and impact on pulp retention during wood kraft pulping. Carbohydr. Polymers. 2005, 60:489-497.
131. Polizeli M.L.T.M., Rizzatti A.C.S., Monti R., Terenzi H.F., Jorge J.A., Amorim D.S. Xylanases from fungi: properties and industrial applications. Appl. Microbiol. Biotechnol. 2005, 67:577-591.
132. Pollet A., Schoepe J., Dornez E., Strelkov S.V., Delcour J.A., Courtin C.M. Functional analysis of glycoside hydrolase family 8 xylanases shows narrow but distinct substrate specificities and biotechnological potential. Appl. Microbiol. Biotechnol. 2010, 87:2125-2135.
133. Puchart V., Biely P. Simultaneous production of endo-β-1,4-xylanase and branched xylooligosaccharides by Thermomyces lanuginosus. J. Biotechnol. 2008, 137:34-43.
134. Puls J., Schuseil J. Chemistry of hemicelluloses: relationship between hemicellulose structure and enzyme required for hydrolysis. Hemicellulose and Hemicellulases 1993, 1-27. Portland Press, London. M.P. Couhglan, G.P. Hazlewood (Eds.).
135. Raimbault M. General and microbiological aspects of solid substrate fermentation. Electronic J. Biotechnol. 1998, 1:1-15.
136. Rodrigues T.H.S., Dantas M.A.A., Pinto G.A.S., Goncalves L.R.B. Tannase production by solid state fermentation of cashew apple bagasse. Appl. Biochem. Biotechnol. 2007, 136-140:675-688.
137. Saha B.C. alpha;-l-Arabinofuranosidases: biochemistry, molecular biology and application in biotechnology. Biotechnol. Adv. 2000, 18:403-423.
138. Sande M.A., Teijeiro-Osorio D., Remunan-Lopez C., Alonso M.J. Glucomannan, a promising polysaccharide for biopharmaceutical purposes. EJlPB. 2009, 72:453-462.
139. Sapag A., Wouters J., Lambert C., Ioannes P., Eyzaguirre J., Depiereux E. The endoxylanases from family 11: computer analysis of protein sequences reveals important structural and phylogenetic relationships. J. Biotechnol. 2002, 95:109-131.
140. Saraswat V., Bisaria V.S. Biosynthesis of xylanolytic and xylan debranching enzymes in Melanocarpus albomyces IIS 68. J. Ferment. Bioeng. 1997, 83:352-357.
141. Scheller H.V., Ulvskov P. Hemicelluloses. Annu. Rev. Plant Biol. 2010, 61:263-289.
142. Shah A.R, Shah R.K, Madamwar D. Improvement of the quality of whole wheat bread by supplementation of xylanase from Aspergillus foetidus. Bioresour. Technol. 2006, 97:2047-2053.
143. Shallom D., Shoham Y. Microbial hemicellulases. Curr. Opin. Microbiol. 2003, 6:219-228.
144. Shallom D., Golan G., Shoham G., Shoham Y. Effect of dimer dissociation on activity and thermostability of the α-glucuronidase from Geobacillus stearothermophilus: dissecting the different oligomeric forms of family 67 glycoside hydrolases. J. Bacteriol. 2004, 6928-6937.
145. Sharma M., Chadha B.S. Characterization of functionally diverse alkaline active xylanases produced by thermophilic fungus Malbranchea flava 2010.
146. Sharma M., Chadha B.S., Kaur M., Ghatora S.K., Saini H.S. Molecular characterization of multiple xylanase producing thermophilic/thermotolerant fungi isolated fromcomposting materials. Lett. Appl. Microbiol. 2008, 46:526-535.
147. Sharma M., Chadha B.S., Saini H.S. Purification and characterization of two thermostable xylanases from Malbranchea flava active under alkaline conditions. Bioresour. Technol. 2010, 101:8834-8842.
148. Sharma M., Soni R., Nazir A., Oberoi H.S., Chadha B.S. Evaluation of glycosyl hydrolases in the secretome of Aspergillus fumigatus and saccharification of alkali treated rice straw. Appl. Biochem. Biotechnol. 2010, doi: 10.1007/s12010-010-9064-3.
149. Silversides F.G, Scott T.A, Korver D.R, Afsharmanesh M., Hruby M. A study on the interaction of xylanase and phytase enzymes in wheat-based diets fed to commercial white and brown egg laying hens. Poult. Sci. 2006, 85:297-305.
150. Singh S., Pillay B., Dilsook V., Prior B.A. Production and properties of hemicellulases by a Thermomyces lanuginosus strain. J. Appl. Microbiol. 2000, 88:975-982.
151. Sinitsyna O.A., Gusakov A.V., Okunev O.N., Serebryany V.A., Vavilova E.A., Vinetsky U.P., et al. Recombinant endo-β-1,4-xylanase from Penicillium canescens. Biochem. (Moscow) 2003, 68:1631-1638.
152. Songsiriritthigul C., Buranabanyat B., Haltrich D., Yamabhai Y. Efficient recombinant expression and secretion of a thermostable GH26 mannan endo-1,4-β-mannosidase from Bacillus licheniformis in Escherichia coli. Microbial Cell Fact. 2010, 9:20. doi:10.1186/1475-2859-9-20.
153. 3) under solid state fermentation. Bioresour. Technol. 2005, 96:1561-1569.
154. Sorensen H.R., Pedersen S., Vikso-Nielsen A., Meyer A.S. Efficiencies of designed enzyme combinations in releasing arabinose and xylose from wheat arabinoxylan in an industrial ethanol fermentation residue. Enzyme Microb. Technol. 2005, 36:773-784.
155. Sorensen H.R., Jorgensen C.T., Hansen C.H., Jorgensen C.I., Pedersen S., Meyer A.S. A novel GH43 α-l-arabinofuranosidase from Humicola insolens: mode of action and synergy with GH51 α-l-arabinofuranosidases on wheat arabinoxylan. Appl. Microbiol. Biotechnol. 2006, 73:850-861.
156. Stalbrand H., Saloheimo A., Vehmaanpera J., Henrissat B., Penttila M. Cloning and expression in Saccharomyces cerevisae of a Trichoderma reesei β-mannanase gene containing a cellulose binding domain. Appl. Environ. Microbiol. 1995, 61:1090-1097.
157. Subramaniyan S., Prema P. Biotechnology of microbial xylanases: enzymology, molecular biology and application. Crit. Rev. Biotechnol. 2002, 22:33-46.
158. Sunna A., Antranikian G. Xylanolytic enzyme from fungi and bacteria. Crit. Rev. Biotechnol. 1997, 17:39-67.
159. Sun X.F., Sun R.C., Fowler P., Baird M.S. Extraction and characterization of original lignin and hemicelluloses from wheat straw. J. Agric. Food. Chem. 2005, 53:860-870.
160. Suzuki S., Fukuoka M., Ookuchi H., Sano M., Ozeki K., Nagayoshi E., et al. Characterization of Aspergillus oryzae glycoside hydrolase family 43 β-xylosidase expressed in Escherichia coli. J. Biosci. Bioeng. 2010, 109(2):115-117.
161. Talabani S.J., Boraston A.B., Turkenburg J.P., Tarbouriech N., Ducros V.M.A., Davies G.J. Ab initio structure determination and functional characterization of CBM36: a new family of calcium-dependent carbohydrate binding modules. Structure 2004, 12:1177-1187.
162. Taylor E.J., Turkenburg J.P., Gloster T.M., Vincent F., Brzozowski A.M., Dupont C., et al. Structure and activity of two metal-ion dependent acetyl xylan esterases involved in plant cell wall degradation reveals a close similarity to peptidoglycan deacetylases. J. Biol. Chem 2006, 281:10968-10975.
163. Techapun C., Poosaran N., Watanabe M., Sasaki K. Thermostable and alkaline-tolerant microbial cellulose-free xylanases produced from agricultural wastes and the properties required for use in pulp bleaching bioprocesses: a review. Process. Biochem. 2003, 38:1327-1340.
164. Thygeson A., Thomson A.B., Schmidt A.S., Jorgenson H., Olsson L. Production of cellulose and hemicellulose degrading enzymes by filamentous fungus cultivated on wet oxidised wheat straw. Enzyme. Microb. Technol. 2003, 32:606-615.
165. Tian C., Beeson W.T., Iavarone A.T., Sun J., Marletta M.A., Cate J.H., et al. Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. PNAS. 2009, 106:22157-22162.
166. Tseng M.J., Yap M.N., Ratanakhanokchai K., Kyu K.L., Chen S.T. Purification and characterization of two cellulase free xylanases from an alkalophilic Bacillus firmus. Enzyme. Microb. Technol. 2002, 30:590-595.
167. Ustinov B.B., Gusakov A.V., Antonov A.I., Sinitsyn A.P. Comparison of properties and mode of action of six secreted xylanases from Chrysosporium lucknowense. Enzyme Microbiol. Technol. 2008, 43:56-65.
168. Vandermarliere E., Bourgois T.M., Winn M.D. Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetroase reveals a different binding mechanism compared to other members of the same family. Biochem. J. 2009, 418:39-47.
169. Van Petegam F., Collins T., Meuwis M.A., Gerday C., Feller G., Van Beeuman J. The structure of a cold-adapted family 8 xylanase at 1.3 Å resolution, structural adaptations to cold and investigations of the active site. J. Biol. Chem. 2003, 278:7531-7539.
170. Vardakou M., Dumon C., Murray J.W. Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases. J. Mol. Biol. 2008, 375:1293-1305.
171. Vries R.P.D., Visser J. Aspergillus Enzymes Involved in Degradation of plant cell wall polysaccharides. Microbiol. Mol. Biol. Rev. 2001, 65(4):497-522.
172. Vrsanska M., Kolenova K., Puchart V., Biely P. Mode of action of glycoside hydrolase family 5 glucuronoxylan xylanohydrolase from Erwinia chrysanthemi. FEBS. J. 2007, 274:1666-1677.
173. Wagschal K., Heng C., Lee C.C., Wong D.W. Biochemical characterization of a novel dual-function arabinofuranosidase/xylosidase isolated from a compost starter mixture. Appl. Microbiol. Biotechnol. 2009, 81:855-863.
174. Wet B.J.M., Prior B.A. Microbial α-Glucuronidases. ACS Symposium Series 2004, vol. 889:241-254. doi: 10.1021/bk-2004-0889. ch014.
175. Wong D.W.S. Feruloyl esterase a key enzyme in biomass degradation. Appl. Biochem. Biotechnol. 2006, 133:87-122.
176. Wong K.K.Y., Saddler J.N. Trichoderma xylanases: their properties and applications. Xylans and Their Xylanases 1992, 171-186. Elsevier, Amsterdam. J. Visser (Ed.).
177. Wong K.K.Y., Tan L.U.L., Saddler J.N. Multiplicity of β-1,4-xylanases in microorganisms: functions and applications. Microbiol. Rev. 1988, 52:305-317.
178. Wymelenberg A.V, Gaskell J., Mozuch M., Sabat G., Ralph J., Skyba O., et al. Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium. Appl. Environ. Microbiol. 2010, 76:3599-3610.
179. Xiong J.S., Balland-Vanney M., Xie Z.P., Schultze M., Kondorosi A., Kondorosi E., et al. Molecular cloning of a bifunctional b-xylosidase/a-Larabinosidase from alfalfa roots: heterologous expression in Medicago truncatula and substrate specificity of the purified enzyme. J. Exp. Bot. 2007, 58:2799-2810.
180. Xu Y., Foong F.C. Characterization of a cellulose binding domain from Clostridium cellulovorans endoglucanase-xylanase D and its use as a fusion partner for soluble protein expression in Escherichia coli. J. Biotechnol. 2008, 135:319-325.
181. Yan Q.J., Wang L., Jiang Z.Q., Yang S.Q., Zhu H.F., Li L.T. A xylose-tolerant β-xylosidase from Paecilomyces thermophila: characterization and its co-action with the endogenous xylanase. Bioresour. Technol. 2008, 99:5402-5410.
182. Zanoelo F.F., Polizeli M.L.T.M., Terenzi H.F., Jorge J.A. Purification and biochemical properties of a thermostable xylose-tolerant β-d-xylosidase from Scytalidium thermophilum. J. Ind. Microbiol. Biotechnol 2004, 31:170-176.
183. Zhao S., Wang J., Bu D., Liu K., Zhu Y., Dong Z., et al. Novel glycoside hydrolases identified by screening a Chinese Holstein dairy cow rumen-derived metagenome library. Appl. Environ. Microbiol. 2010, 76:6701-6705.
184. Zheng Y., Pan Z., Zhang R. Overview of biomass pretreatment for cellulosic ethanol production. Int. J. Agric. Biol. Eng 2009, 2:51-68.
185. Ziser L., Withers S.G. A short synthesis of β-xylobiosides. Carbohydr. Res. 1994, 265:9-17.