Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to xylan hydrolysis

Bioscience, Biotechnology and Biochemistry

Volumn 65, Issue 1, 2001, Pages 41-47

  Ali, Mursheda K ^a   Hayashi, Hidenori ^a   Karita, Shuichi ^a   Goto, Masakazu ^a   Kimura, Tetsuya ^a   Sakka, Kazuo ^a   Ohmiya, Kunio ^a  

^a MIE UNIVERSITY   (Japan)

Author keywords

Carbohydrate binding module; Cellulose binding domain; Clostridium stercorarium; Xylan binding domain; Xylanase

Indexed keywords

CLOSTRIDIUM; CLOSTRIDIUM STERCORARIUM;

CELLULOSE; XYLAN; XYLAN 1,4 BETA XYLOSIDASE; XYLAN ENDO 1,3 BETA XYLOSIDASE;

ARTICLE; CATALYSIS; CHEMISTRY; CLOSTRIDIUM; ENZYMOLOGY; GENETICS; HYDROLYSIS; METABOLISM; MOLECULAR GENETICS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN TERTIARY STRUCTURE;

CATALYSIS; CELLULOSE; CLOSTRIDIUM; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HYDROLYSIS; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; XYLAN ENDO-1,3-BETA-XYLOSIDASE; XYLANS; XYLOSIDASES;

EID: 0035228279     PISSN: 09168451     EISSN: None     Source Type: Journal    
DOI: 10.1271/bbb.65.41     Document Type: Article

References (41)

1. Biely, P., Microbial xylanolytic systems. Trends Biotechnol., 3, 286-290 (1985).
2. Tomme, P., Warren, R. A. J., and Gilkes, N. R., Cellulose hydrolysis by bacteria and fungi. Adv. Microbial. Physiol., 37, 1-81 (1995).
3. Ohmiya, K., Sakka, K., Karita, S., and Kimura, T., Structure of cellulases and their applications. Biotechnol. Genet. Eng. Rev., 14, 365-414 (1997).
4. Henrissat, B. and Bairoch, A., Updating the sequence-based classification of glycosyl hydrolases. Biochem. J., 316, 695-696 (1996).
5. Henrissat, B. and Coutinho, P., [Online] Glycosyl hydrolase families. Architecture et Fonction des Macromoléules Biologiques, CNRS, Marseille, France. http://afmb.cnrs-mrs.fr/~pedro/CAZY/ghf.html.
6. Tomme, P., Warren, A. J., Miller, Jr., R. C., Kilburn, D. G., and Gilkes, N. R., Cellulose-binding domains - classification and properties. In "The enzyme degradation of insoluble polysaccharides", eds. Saddler, J. M. and Penner, M., American Chemical Society, Washington, DC, pp. 142-161 (1995).
7. Tomme, P., Boraston, A., McLean, B., Kormos, J., Creagh, A. L., Sturch, K., Gilkes, N. R., Haynes, C. A., Warren, R. A. J., and Kilburn, D. G., Characterization and affinity application of cellulose-binding domains. J. Chromatogr. B, 715, 283-296 (1998).
8. Henrissat, B., Teeri, T. T., and Warren, R. A. J., A scheme for designating enzymes that hydrolyse the polysaccharides in the cell walls of plants. FEBS Lett., 425, 352-354 (1998).
9. Ali, M. K., Fukumura, M., Sakano, K., Karita, S., Kimura, T., Sakka, K., and Ohmiya, K., Cloning, sequencing, and expression of the gene encoding the Clostridium stercorarium xylanase C in Escherichia coli. Biosci. Biotechnol. Biochem., 63, 1596-1604 (1999).
10. Morris, D. D., Gibbs, M. D., Ford, M., Thomas, J., and Bergquist, P. L., Family 10 and 11 xylanase genes from Caldicellulosiruptor so strain Rt69B.1. Extremophiles, 3, 103-111 (1999).
11. Lee, Y.-E., Lowe, S. L., Henrissat, B., and Zeikus, G., Characterization of the active site and thermostability regions of endoxylanase from Thermoanaerobacteriurn saccharolyticum B6A-R1. J. Bacteriol., 175, 5890-5898 (1993).
12. Matuschek, M., Sahm, K., Zibat, A., and Bahl, H., Characterization of genes from Thermoanaerobacterium thermosulfurigenes EM1 that encode two glycosyl hydrolases with conserved S-layer-like domains. Mol. Gen. Genet., 252, 493-496 (1996).
13. Winterhalter, C., Heinrich, P., Candussio, A., Wich, G., and Liebl, W., Identification of a novel cellulose-binding domain within the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima. Mol. Microbiol., 15, 431-444 (1995).
14. Zverlov, V., Piotukh, K., Dakhova, O., Velikodvorskaya, G., and Borriss, R., The multidomain xylanase A of the hyperthermophilic bacterium Thermotoga neapolitana is extremely thermoresistant. Appl. Microbiol. Biotechnol., 45, 245-247 (1996).
15. Blanco, A., Diaz, P., Zueco, J., Parascandola, P., and Pastor, F. I. J., A multidomain xylanase from a Bacillus sp. with a region homologous to thermostabilizing domains of thermophilic enzymes. Microbiology, 145, 2163-2170 (1999).
16. Clarke, J. H., Davidson, K., Gilbert, H. J., Fontes, C. M. G. A., and Hazlewood, G. P., A modular xylanase from mesophilic Cellulomonas fimi contains the same cellulose-binding and thermostabilizing domains as xylanases from thermophilic bacteria. FEMS Microbiol. Lett., 139, 27-35 (1996).
17. Cazemier, A. E., Verdoes, J. C., van Ooyen, A. J. J., and Op den Camp, H. J. M., Molecular and biochemical characterization of two xylanase-encoding genes from Cellulomonas pachnodae. Appl. Environ. Microbiol., 65, 4099-4107 (1999).
18. Wassenberg, D., Schurig, H., Liebl, W., and Jaenicke, R., Xylanase myna from the hyperthermophilic bacterium Thermotoga maritima: Structure and stability of the recombinant enzyme and its isolated cellulose-binding domain. Prot. Sci., 6, 1718-1726 (1997).
19. Lamed, R., Kenig, R., Setter, E., and Bayer, E. A., Major characteristics of the cellulolytic system of Clostridium thermocellum coincide with those of the purified cellulosome. Enzyme Microb. Technol., 7, 37-41 (1985).
20. Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680-685 (1970).
21. Miller, G. L., Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem., 31, 426-428 (1959).
22. Morrison, I. M., Changes in the hemicellulosic polysaccharides of rye-grass with increasing maturity. Carbohydr. Res., 36, 45-51 (1974).
23. Wise, L. E., Murphy, M., and D'Addieco, A. A., Chlorite halocellulose, its fractionation and bearing on summative wood analysis and on studies on the hemicelluoses. Paper Trade J., 122, 35-43.
24. Koshijima, T., Taniguchi, T., and Tanaka, R., Lignin carbohydrate complex Pt. I. The influence of milling of wood upon the Björkman LCC. Holzforschung, 26, 211-217 (1972).
25. Black, G. W., Hazlewood, G. P., Millwaed-Sadler, S, J., Laurie, J. I., and Gilbert, H. J., A modular xylanase containing a novel non-catalytic xylan-specific binding domain. Biochem. J., 307, 191-195 (1995).
26. ex) of an exoglucanase from Cellulomonas fimi: Production in Escherichia coli and characterization of the polypeptide. Biotechnol. Bioeng., 42, 401-409 (1993).
27. Goldstein, M. A., Takagi, M., Hashida, S., Shoseyov, O., and Doi, R. H., Characterization of the cellulose-binding domain of the Clostridium cellulovorans cellulose-binding protein A. J. Bacteriol., 175, 5762-5768 (1993).
28. Morag, E., Lapidot, A., Govorko, D., Lamed, R., Wilchek, M., Bayer, E. A., and Shoham, Y., Expression, purification, and characterization of the cellulose-binding domain of the scaffoldin subunit from the cellulosome of Clostridium thermocellum. Appl. Environ. Microbiol., 61, 1980-1986 (1995).
29. Brun, E., Moriaud, F., Gans, P., Blackledge, M. J., Barras, F., and Marion, D., Solution structure of the cellulose-binding domain of the endoglucanase Z secreted by Erwinia chrysanthemi. Biochemistry, 36, 16047-16086 (1997).
30. Coutinho, J. B., Gilkes, N. R., Warren, R. A. J., Kilburn, D. G., and Miller, Jr., R. C., The binding of Cellulomonas fimi endoglucanase C (CenC) to cellulose and Sephadex is mediated by the N-terminal repeats. Mol. Microbiol., 6, 1243-1252 (1992).
31. Sun, J. L., Sakka, S., Karita, S., Kimura, T., and Ohmiya, K., Adsorption of Clostridium stercorarium xylanase A to insoluble xylan and the importance of the CBDs to xylan hydrolysis. J. Ferment. Biosci., 85, 63-68 (1998).
32. Tomme, P., Creagh, A. L., Kilburn, D. G., and Haynes, C. A., Interaction of polysaccharides with the N-terminal cellulose-binding domain of Cellulomonas fimi CenC. 1. Binding specificity and calorimetric analysis. Biochemistry, 35, 13885-13894 (1996).
33. Johnson, P. E., Joshi, M. D., Tomme, P., Kilburn, D. G., and McIntosh, L. P., Structure of the N-terminal cellulose-binding domain of Cellulomonas fimi CenC determined by nuclear magnetic resonance spectroscopy. Biochemistry, 35, 14381-14394 (1996).
34. Kraulis, P. J., Clore, G. M., Nilges, M., Jones, T. A., Pettersson, G., Knowles, J., and Gronenborn, A. M.: Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase 1 from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. Biochemistry, 28, 7241-7257 (1989).
35. Xu, G.-Y., Ong, E., Gilkes, N. R., Kilburn, D. G., Muhandiram, D. R., Harris-Brandts, M., Carver, J. P., Kay, L. E., and Harvey, T. S., Solution structure of a cellulose-binding domain from Cellulomonas fimi by nuclear magnetic resonance spectroscopy. Biochemistry, 34, 6993-7009 (1995).
36. Tormo, J., Lamed, R., Chirino, A. J., Morag, E., Bayer, E. A., Shoham, Y., and Steitz, T. A., Crystal structure of a bacterial family-III cellulose-binding domain: a general mechanism for attachment to cellulose. EMBO J., 15, 5739-575) (1996).
37. Simpson, P. J., Bolam, D. N., Cooper, A., Ciruela, A., Hazlewood, G. P., Gilbert, H. J., and Williamson, M. P., A family IIb xylan-binding domain has a similar secondary structure to a homologous family IIa cellulose-binding domain but different ligand specificity. Structure Fold Des., 7, 853-64 (1999).
38. Karita, S., Kimura, T., Sakka, K., and Ohmiya, K., Purification of the Ruminococcus albus endoglucanase IV using a cellulose-binding domain as an affinity tag. J. Ferment. Bioeng., 84, 354-357 (1997).
39. Black, G. W., Rixon, J. E., Clarke, J. H., Hazlewood, G. P., Theodorou, M. K., Morris, P., and Gilbert, H. J., Evidence that linker sequences and cellulose-binding domains enhance the activity of hemicellulases against complex substrates. Biochem. J., 319, 515-20 (1996).
40. Gill, J., Rixon, J. E., Bolam, D. N., McQueen-Mason, S., Simpson, P. J., Williamson, M. P., Hazlewood, G. P., and Gilbert, H. J., The type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanisms. Biochem. J., 342, 473-480 (1999).
41. Sunna, A., Gibbs, M. D., Bergquist, P. L., The thermostabilizing domain, XynA, of Caldibacillus cellulovorans xylanase is a xylan binding domain. Biochem. J., 346, 583-586 (2000).