메뉴 건너뛰기




Volumn 10, Issue 2, 2008, Pages 207-217

DNA microarrays for identifying fishes

Author keywords

Capture oligonucleotide; DNA chips; Pisces; Species identification

Indexed keywords

HYBRIDISATIONS; SPECIES IDENTIFICATION;

EID: 40449135996     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-007-9068-3     Document Type: Article
Times cited : (82)

References (55)
  • 2
    • 33747075171 scopus 로고    scopus 로고
    • Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae
    • Barber P, Boyce SL (2006) Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae. Proc Royal Soc London B 273:2053-2061
    • (2006) Proc Royal Soc London B , vol.273 , pp. 2053-2061
    • Barber, P.1    Boyce, S.L.2
  • 3
  • 4
    • 0033133559 scopus 로고    scopus 로고
    • Taxonomic and systematic assessment of planktonic copepods using mitochondrial COI sequence variation and competitive, species-specific PCR
    • Bucklin A, Guarnieri M, Hill RS, Bentley AM, Kaartvedt S (1999) Taxonomic and systematic assessment of planktonic copepods using mitochondrial COI sequence variation and competitive, species-specific PCR. Hydrobiologia 401:239-254
    • (1999) Hydrobiologia , vol.401 , pp. 239-254
    • Bucklin, A.1    Guarnieri, M.2    Hill, R.S.3    Bentley, A.M.4    Kaartvedt, S.5
  • 5
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • Call DR, Borucki MK, Loge FJ (2003) Detection of bacterial pathogens in environmental samples using DNA microarrays. J Microbiologic Methods 53:235-243
    • (2003) J Microbiologic Methods , vol.53 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 7
    • 27944456465 scopus 로고    scopus 로고
    • Fabrication of high quality microarrays
    • Dufva M (2005) Fabrication of high quality microarrays. Biomolecular Engineer 22:173-184
    • (2005) Biomolecular Engineer , vol.22 , pp. 173-184
    • Dufva, M.1
  • 9
    • 14844334216 scopus 로고    scopus 로고
    • TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: Implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods
    • Fox CJ, Taylor MI, Pereyra R, Villasana MI, Rico C (2005) TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods. Mol Ecol 14:879-884
    • (2005) Mol Ecol , vol.14 , pp. 879-884
    • Fox, C.J.1    Taylor, M.I.2    Pereyra, R.3    Villasana, M.I.4    Rico, C.5
  • 10
    • 0037059641 scopus 로고    scopus 로고
    • Techniques for the identification of bivalve larvae
    • Garland ED, Zimmer CA (2002) Techniques for the identification of bivalve larvae. Marine Ecol Prog Ser 225:299-310
    • (2002) Marine Ecol Prog ser , vol.225 , pp. 299-310
    • Garland, E.D.1    Zimmer, C.A.2
  • 13
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 33644844520 scopus 로고    scopus 로고
    • Microarray technology: Beyond transcript profiling and genotype analysis
    • Hoheisel JD (2006) Microarray technology: beyond transcript profiling and genotype analysis. Nat Rev Genetics 7:200-210
    • (2006) Nat Rev Genetics , vol.7 , pp. 200-210
    • Hoheisel, J.D.1
  • 17
    • 0036897767 scopus 로고    scopus 로고
    • A DNAbased method for identification of krill species and its application to analysing the diet of marine vertebrate predators
    • Jarman SN, Gales NJ, Tierney M, Gill PC, Elliott NG (2002) A DNAbased method for identification of krill species and its application to analysing the diet of marine vertebrate predators. Mol Ecol 11:2679-2690
    • (2002) Mol Ecol , vol.11 , pp. 2679-2690
    • Jarman, S.N.1    Gales, N.J.2    Tierney, M.3    Gill, P.C.4    Elliott, N.G.5
  • 20
    • 0345393171 scopus 로고    scopus 로고
    • Molecular phylogeny of the lionfish genera Dendrochirus and Pterois (Scorpaenidae, Pteroinae) based on mitochondrial DNA sequences
    • Kochzius M, Söller R, Khalaf MA, Blohm D (2003) Molecular phylogeny of the lionfish genera Dendrochirus and Pterois (Scorpaenidae, Pteroinae) based on mitochondrial DNA sequences. Mol Phylogenetics Evol 28:396-403
    • (2003) Mol Phylogenetics Evol , vol.28 , pp. 396-403
    • Kochzius, M.1    Söller, R.2    Khalaf, M.A.3    Blohm, D.4
  • 22
    • 23744455067 scopus 로고    scopus 로고
    • DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses
    • Korimbocus J, Scaramozzino N, Lacroix B, Crance JM, Garin D, Vernet G (2005) DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses. J Clin Microbiol 43:3779-3787
    • (2005) J Clin Microbiol , vol.43 , pp. 3779-3787
    • Korimbocus, J.1    Scaramozzino, N.2    Lacroix, B.3    Crance, J.M.4    Garin, D.5    Vernet, G.6
  • 23
    • 17744363400 scopus 로고    scopus 로고
    • Gene expression in Florida red tide dinoflagellate Karenia brevis: Analysis of an expressed sequence tag library and development of DNA microarray
    • Lidie KB, Ryan JC, Barbier M, Van Dolah FM (2005) Gene expression in Florida red tide dinoflagellate Karenia brevis: analysis of an expressed sequence tag library and development of DNA microarray. Marine Biotechnol 7:481-493
    • (2005) Marine Biotechnol , vol.7 , pp. 481-493
    • Lidie, K.B.1    Ryan, J.C.2    Barbier, M.3    Van Dolah, F.M.4
  • 24
    • 28544435896 scopus 로고    scopus 로고
    • Highly parallel microbial diagnostics using oligonucleotide microarrays
    • Loy A, Bodrossy L (2005) Highly parallel microbial diagnostics using oligonucleotide microarrays. Clinica Chimica Acta 363:106-119
    • (2005) Clinica Chimica Acta , vol.363 , pp. 106-119
    • Loy, A.1    Bodrossy, L.2
  • 27
    • 19944382034 scopus 로고    scopus 로고
    • DNA microchips for phytoplankton: The fluorescent wave of the future
    • Metfies K, Medlin L (2004) DNA microchips for phytoplankton: the fluorescent wave of the future. Nova Hedwigia 79:321-327
    • (2004) Nova Hedwigia , vol.79 , pp. 321-327
    • Metfies, K.1    Medlin, L.2
  • 28
    • 10044264088 scopus 로고    scopus 로고
    • Electrochemical detection of the toxic dinoflagellate Alexandrium ostenfeldii with a DNA-biosensor
    • Metfies K, Huljic S, Lange M, Medlin LK (2005) Electrochemical detection of the toxic dinoflagellate Alexandrium ostenfeldii with a DNA-biosensor. Biosensors Bioelectronics 20:1349-1357
    • (2005) Biosensors Bioelectronics , vol.20 , pp. 1349-1357
    • Metfies, K.1    Huljic, S.2    Lange, M.3    Medlin, L.K.4
  • 29
    • 0001792962 scopus 로고
    • Evolution of mitochondrial DNA in fishes
    • Hochachka PW, Mommsen TP (eds). 2nd edn Elsevier, Amsterdam
    • Meyer A (1993) Evolution of mitochondrial DNA in fishes. In: Hochachka PW, Mommsen TP (eds) Biochemistry and molecular biology of fishes. 2nd edn. Elsevier, Amsterdam, p 1-38
    • (1993) Biochemistry and Molecular Biology of Fishes , pp. 1-38
    • Meyer, A.1
  • 30
    • 16844386987 scopus 로고    scopus 로고
    • DNA microarray for rapid detection of mitochondrial DNA haplotypes of chum salmon
    • Moriya S, Urawa S, Suzuki O, Urano A, Abe S (2004) DNA microarray for rapid detection of mitochondrial DNA haplotypes of chum salmon. Marine Biotechnol 6:430-434
    • (2004) Marine Biotechnol , vol.6 , pp. 430-434
    • Moriya, S.1    Urawa, S.2    Suzuki, O.3    Urano, A.4    Abe, S.5
  • 31
    • 34247641175 scopus 로고    scopus 로고
    • Genetic stock identification of chum salmon in the Bering Sea and North Pacific Ocean using mitochondrial DNA microarray
    • Moriya S, Sato S, Azumaya T, Suzuki O, Urawa S, Urano A, Abe S (2007) Genetic stock identification of chum salmon in the Bering Sea and North Pacific Ocean using mitochondrial DNA microarray. Marine Biotechnol 9:179-191
    • (2007) Marine Biotechnol , vol.9 , pp. 179-191
    • Moriya, S.1    Sato, S.2    Azumaya, T.3    Suzuki, O.4    Urawa, S.5    Urano, A.6    Abe, S.7
  • 32
    • 0035707814 scopus 로고    scopus 로고
    • Molecular discrimination of garfish Hyporhamphus (Beloniformes) larvae in southern Australian waters
    • Noell CJ, Donnellan S, Foster R, Haigh L (2001) Molecular discrimination of garfish Hyporhamphus (Beloniformes) larvae in southern Australian waters. Marine Biotechnol 3:509-514
    • (2001) Marine Biotechnol , vol.3 , pp. 509-514
    • Noell, C.J.1    Donnellan, S.2    Foster, R.3    Haigh, L.4
  • 34
    • 0030012168 scopus 로고    scopus 로고
    • Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of Piranhas
    • Ortí G, Petry P, Porto JIR, Jégu M, Meyer A (1996) Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of Piranhas. J Mol Evolution 42:169-182
    • (1996) J Mol Evolution , vol.42 , pp. 169-182
    • Ortí, G.1    Petry, P.2    Porto, J.I.R.3    Jégu, M.4    Meyer, A.5
  • 35
    • 0037335692 scopus 로고    scopus 로고
    • Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNAtargeting oligonucleotide probes
    • Peplies J, Glöckner FO, Amann R (2003) Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNAtargeting oligonucleotide probes. Appl Environ Microbiol 69:1397-1407
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1397-1407
    • Peplies, J.1    Glöckner, F.O.2    Amann, R.3
  • 36
    • 2642525491 scopus 로고    scopus 로고
    • Application and validation of DNA microarrays for the 16S rRNAbased analysis of marine bacterioplankton
    • Peplies J, Lau SC, Pernthaler J, Amann R, Glöckner FO (2004) Application and validation of DNA microarrays for the 16S rRNAbased analysis of marine bacterioplankton. Environ Microbiol 6:638-645
    • (2004) Environ Microbiol , vol.6 , pp. 638-645
    • Peplies, J.1    Lau, S.C.2    Pernthaler, J.3    Amann, R.4    Glöckner, F.O.5
  • 37
    • 1942453353 scopus 로고    scopus 로고
    • Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase i vs. cytochrome b as genetic markers
    • PfunderM,HolzgangO, Frey JE (2004)Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Mol Ecol 13:1277-1286
    • (2004) Mol Ecol , vol.13 , pp. 1277-1286
    • Pfunder, M.1    Holzgang, O.2    Frey, J.E.3
  • 40
    • 0032585559 scopus 로고    scopus 로고
    • Multiplex haplotype-specific PCR: A new approach for species identification of the early life stages of rockfishes of the species-rich genus Sebastes Cuvier
    • Rocha-Olivares A (1998) Multiplex haplotype-specific PCR: a new approach for species identification of the early life stages of rockfishes of the species-rich genus Sebastes Cuvier. J Exp Marine Biol Ecol 231:279-290
    • (1998) J Exp Marine Biol Ecol , vol.231 , pp. 279-290
    • Rocha-Olivares, A.1
  • 41
    • 28444484715 scopus 로고    scopus 로고
    • Differentiation of important and closely related cereal plant species (Poaceae) in food by hybridisation to an oligonucleotide array
    • Rønning SB, Rudi K, Berdal KG, Holst-Jensen A (2005) Differentiation of important and closely related cereal plant species (Poaceae) in food by hybridisation to an oligonucleotide array. J Agricultural Food Chem 53:8874-8880
    • (2005) J Agricultural Food Chem , vol.53 , pp. 8874-8880
    • Rønning, S.B.1    Rudi, K.2    Berdal, K.G.3    Holst-Jensen, A.4
  • 42
    • 0037011972 scopus 로고    scopus 로고
    • DNA-based identification of larval cod in stomach contents of predatory fishes
    • Rosel PE, Kocher TD (2002) DNA-based identification of larval cod in stomach contents of predatory fishes. J Exp Marine Biol Ecol 267:75-88
    • (2002) J Exp Marine Biol Ecol , vol.267 , pp. 75-88
    • Rosel, P.E.1    Kocher, T.D.2
  • 43
    • 0038150494 scopus 로고    scopus 로고
    • Detection of Japanese flounder-specific DNA from gut contents of potential predators in the field
    • Saitho K, Takagaki M, Yamashita Y (2003) Detection of Japanese flounder-specific DNA from gut contents of potential predators in the field. Fisheries Sci 69:473-477
    • (2003) Fisheries Sci , vol.69 , pp. 473-477
    • Saitho, K.1    Takagaki, M.2    Yamashita, Y.3
  • 44
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia J (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 95:1460-1465
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 1460-1465
    • Santalucia, J.1
  • 45
    • 27944489231 scopus 로고    scopus 로고
    • What can biological barcoding do for marine biology?
    • Schander C, Willassen E (2005) What can biological barcoding do for marine biology? Marine Biol Res 1:79-83
    • (2005) Marine Biol Res , vol.1 , pp. 79-83
    • Schander, C.1    Willassen, E.2
  • 47
    • 84984934354 scopus 로고    scopus 로고
    • Molecular interactions on microarrays
    • Southern E, Mir K, Shchepinov M (1999) Molecular interactions on microarrays. Nat Genet 21:5-9
    • (1999) Nat Genet , vol.21 , pp. 5-9
    • Southern, E.1    Mir, K.2    Shchepinov, M.3
  • 48
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson JG, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.G.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 33646865907 scopus 로고    scopus 로고
    • Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray
    • Tobler NE, Pfunder M, Herzog K, Frey JE, Altwegg M (2006) Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray. J Microbiol Methods 66:116-124
    • (2006) J Microbiol Methods , vol.66 , pp. 116-124
    • Tobler, N.E.1    Pfunder, M.2    Herzog, K.3    Frey, J.E.4    Altwegg, M.5
  • 51
    • 33750514804 scopus 로고    scopus 로고
    • Discovery of the genes in response to white spot syndrome virus (WSSV) infection in Fenneropenaeus chinensis through cDNA microarray
    • Wang B, Li F, Dong B, Zhang X, Zhang C, Xiang J (2006) Discovery of the genes in response to white spot syndrome virus (WSSV) infection in Fenneropenaeus chinensis through cDNA microarray. Marine Biotechnol 8:491-500
    • (2006) Marine Biotechnol , vol.8 , pp. 491-500
    • Wang, B.1    Li, F.2    Dong, B.3    Zhang, X.4    Zhang, C.5    Xiang, J.6
  • 53
    • 3242799851 scopus 로고    scopus 로고
    • Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays
    • Warsen AE, Krug MK, LaFrentz S, Stanek DR, Loge F, Call DR (2004) Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays. Appl Environ Microbiol 70:4216-4221
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4216-4221
    • Warsen, A.E.1    Krug, M.K.2    Lafrentz, S.3    Stanek, D.R.4    Loge, F.5    Call, D.R.6
  • 54
    • 0042433120 scopus 로고    scopus 로고
    • A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus)
    • Williams TD, Gensberg K, Minchin SD, Chipman JK (2003) A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Aquatic Toxicol 65:141-157
    • (2003) Aquatic Toxicol , vol.65 , pp. 141-157
    • Williams, T.D.1    Gensberg, K.2    Minchin, S.D.3    Chipman, J.K.4
  • 55
    • 28544450415 scopus 로고    scopus 로고
    • Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridisations
    • Zhang L, Hurek T, Reinhold-Hurek B (2005) Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridisations. Nucleic Acids Res 33:e166
    • (2005) Nucleic Acids Res , vol.33
    • Zhang, L.1    Hurek, T.2    Reinhold-Hurek, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.