-
1
-
-
0017803822
-
Studies on the conformational properties of the high-mobility-group chromosomal protein HMG 17 and its interaction with DNA
-
B.D. Abercrombie, G.G. Kneale, C. Crane-Robinson, E.M. Bradbury, G.H. Goodwin, J.M. Walker, and E.W. Johns Studies on the conformational properties of the high-mobility-group chromosomal protein HMG 17 and its interaction with DNA European Journal of Biochemistry 84 1978 173 177
-
(1978)
European Journal of Biochemistry
, vol.84
, pp. 173-177
-
-
Abercrombie, B.D.1
Kneale, G.G.2
Crane-Robinson, C.3
Bradbury, E.M.4
Goodwin, G.H.5
Walker, J.M.6
Johns, E.W.7
-
2
-
-
0347755642
-
ProTherm, version 4.0: Thermodynamic database for proteins and mutants
-
K.A. Bava, M.M. Gromiha, H. Uedaira, K. Kitajima, and A. Sarai ProTherm, version 4.0: thermodynamic database for proteins and mutants Nucleic Acids Research 32 2004 D120 D121
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Bava, K.A.1
Gromiha, M.M.2
Uedaira, H.3
Kitajima, K.4
Sarai, A.5
-
3
-
-
17244369458
-
Conformational variability of matrix metalloproteinases: Beyond a single 3D structure
-
I. Bertini, V. Calderone, M. Cosenza, M. Fragai, Y.M. Lee, C. Luchinat, S. Mangani, B. Terni, and P. Turano Conformational variability of matrix metalloproteinases: beyond a single 3D structure Proceedings of the National Academy of Sciences of the United States of America 102 2005 5334 5339
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 5334-5339
-
-
Bertini, I.1
Calderone, V.2
Cosenza, M.3
Fragai, M.4
Lee, Y.M.5
Luchinat, C.6
Mangani, S.7
Terni, B.8
Turano, P.9
-
5
-
-
0036017388
-
Evolutionary rate heterogeneity in proteins with long disordered regions
-
C.J. Brown, S. Takayama, A.M. Campen, P. Vise, T.W. Marshall, C.J. Oldfield, C.J. Williams, and A.K. Dunker Evolutionary rate heterogeneity in proteins with long disordered regions Journal of Molecular Evolution 55 2002 104 110
-
(2002)
Journal of Molecular Evolution
, vol.55
, pp. 104-110
-
-
Brown, C.J.1
Takayama, S.2
Campen, A.M.3
Vise, P.4
Marshall, T.W.5
Oldfield, C.J.6
Williams, C.J.7
Dunker, A.K.8
-
6
-
-
0030358586
-
High-mobility-group chromosomal proteins: Architectural components that facilitate chromatin function
-
M. Bustin, and R. Reeves High-mobility-group chromosomal proteins: architectural components that facilitate chromatin function Progress in Nucleic Acid Research and Molecular Biology 54 1996 35 100
-
(1996)
Progress in Nucleic Acid Research and Molecular Biology
, vol.54
, pp. 35-100
-
-
Bustin, M.1
Reeves, R.2
-
7
-
-
33645778262
-
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions
-
J.W. Chen, P. Romero, V.N. Uversky, and A.K. Dunker Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions Journal of Proteome Research 5 2006 879 887
-
(2006)
Journal of Proteome Research
, vol.5
, pp. 879-887
-
-
Chen, J.W.1
Romero, P.2
Uversky, V.N.3
Dunker, A.K.4
-
8
-
-
16244415566
-
Atomic resolution structures of CTX-M beta-lactamases: Extended spectrum activities from increased mobility and decreased stability
-
Y. Chen, J. Delmas, J. Sirot, B. Shoichet, and R. Bonnet Atomic resolution structures of CTX-M beta-lactamases: extended spectrum activities from increased mobility and decreased stability Journal of Molecular Biology 348 2005 349 362
-
(2005)
Journal of Molecular Biology
, vol.348
, pp. 349-362
-
-
Chen, Y.1
Delmas, J.2
Sirot, J.3
Shoichet, B.4
Bonnet, R.5
-
9
-
-
75149164436
-
PreDisorder: Ab initio sequence-based prediction of protein disordered regions
-
X. Deng, J. Eickholt, and J. Cheng PreDisorder: ab initio sequence-based prediction of protein disordered regions BMC Bioinformatics 10 2009 436
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 436
-
-
Deng, X.1
Eickholt, J.2
Cheng, J.3
-
10
-
-
84859051901
-
ELM - The database of eukaryotic linear motifs
-
H. Dinkel, S. Michael, R.J. Weatheritt, N.E. Davey, K. Van Roey, B. Altenberg, G. Toedt, B. Uyar, M. Seiler, A. Budd, L. Jodicke, M.A. Dammert, C. Schroeter, M. Hammer, T. Schmidt, P. Jehl, C. McGuigan, M. Dymecka, C. Chica, K. Luck, A. Via, A. Chatr-Aryamontri, N. Haslam, G. Grebnev, R.J. Edwards, M.O. Steinmetz, H. Meiselbach, F. Diella, and T.J. Gibson ELM - the database of eukaryotic linear motifs Nucleic Acids Research 40 2012 D242 D251
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Dinkel, H.1
Michael, S.2
Weatheritt, R.J.3
Davey, N.E.4
Van Roey, K.5
Altenberg, B.6
Toedt, G.7
Uyar, B.8
Seiler, M.9
Budd, A.10
Jodicke, L.11
Dammert, M.A.12
Schroeter, C.13
Hammer, M.14
Schmidt, T.15
Jehl, P.16
McGuigan, C.17
Dymecka, M.18
Chica, C.19
Luck, K.20
Via, A.21
Chatr-Aryamontri, A.22
Haslam, N.23
Grebnev, G.24
Edwards, R.J.25
Steinmetz, M.O.26
Meiselbach, H.27
Diella, F.28
Gibson, T.J.29
more..
-
11
-
-
0037188377
-
Intrinsic disorder and protein function
-
A.K. Dunker, C.J. Brown, J.D. Lawson, L.M. Iakoucheva, and Z. Obradovic Intrinsic disorder and protein function Biochemistry 41 2002 6573 6582
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
12
-
-
0034570889
-
Intrinsic protein disorder in complete genomes
-
A.K. Dunker, Z. Obradovic, P. Romero, E.C. Garner, and C.J. Brown Intrinsic protein disorder in complete genomes Genome Informatics Series: Workshop on Genome Informatics 11 2000 161 171
-
(2000)
Genome Informatics Series: Workshop on Genome Informatics
, vol.11
, pp. 161-171
-
-
Dunker, A.K.1
Obradovic, Z.2
Romero, P.3
Garner, E.C.4
Brown, C.J.5
-
15
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
R.C. Edgar MUSCLE: a multiple sequence alignment method with reduced time and space complexity BMC Bioinformatics 5 2004 113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
16
-
-
33745686603
-
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
-
D. Ekman, S. Light, A.K. Bjorklund, and A. Elofsson What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biology 7 2006 R45
-
(2006)
Genome Biology
, vol.7
, pp. 45
-
-
Ekman, D.1
Light, S.2
Bjorklund, A.K.3
Elofsson, A.4
-
18
-
-
73149090127
-
Thermodynamic aspects of coupled binding and folding of an intrinsically disordered protein: A computational alanine scanning study
-
L.M. Espinoza-Fonseca Thermodynamic aspects of coupled binding and folding of an intrinsically disordered protein: a computational alanine scanning study Biochemistry 48 2009 11332 11334
-
(2009)
Biochemistry
, vol.48
, pp. 11332-11334
-
-
Espinoza-Fonseca, L.M.1
-
19
-
-
0032916868
-
ProTherm thermodynamic database for proteins and mutants
-
M.M. Gromiha, J. An, H. Kono, M. Oobatake, H. Uedaira, and A. Sarai ProTherm thermodynamic database for proteins and mutants Nucleic Acids Research 27 1999 286 288
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 286-288
-
-
Gromiha, M.M.1
An, J.2
Kono, H.3
Oobatake, M.4
Uedaira, H.5
Sarai, A.6
-
20
-
-
33748074139
-
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
-
C. Haynes, C.J. Oldfield, F. Ji, N. Klitgord, M.E. Cusick, P. Radivojac, V.N. Uversky, M. Vidal, and L.M. Iakoucheva Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes PLOS Computational Biology 2 2006 e100
-
(2006)
PLOS Computational Biology
, vol.2
, pp. 100
-
-
Haynes, C.1
Oldfield, C.J.2
Ji, F.3
Klitgord, N.4
Cusick, M.E.5
Radivojac, P.6
Uversky, V.N.7
Vidal, M.8
Iakoucheva, L.M.9
-
21
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
X. He, and J. Zhang Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution Genetics 169 2005 1157 1164
-
(2005)
Genetics
, vol.169
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
22
-
-
33745911143
-
A single amino acid mutation contributes to adaptive beach mouse color pattern
-
H.E. Hoekstra, R.J. Hirschmann, R.A. Bundey, P.A. Insel, and J.P. Crossland A single amino acid mutation contributes to adaptive beach mouse color pattern Science 313 2006 101 104
-
(2006)
Science
, vol.313
, pp. 101-104
-
-
Hoekstra, H.E.1
Hirschmann, R.J.2
Bundey, R.A.3
Insel, P.A.4
Crossland, J.P.5
-
23
-
-
0038148710
-
Conformational diversity and protein evolution - A 60-year-old hypothesis revisited
-
L.C. James, and D.S. Tawfik Conformational diversity and protein evolution - a 60-year-old hypothesis revisited Trends in Biochemical Sciences 28 2003 361 368
-
(2003)
Trends in Biochemical Sciences
, vol.28
, pp. 361-368
-
-
James, L.C.1
Tawfik, D.S.2
-
24
-
-
79961085477
-
Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR
-
H. Kato, H. van Ingen, B.R. Zhou, H. Feng, M. Bustin, L.E. Kay, and Y. Bai Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR Proceedings of the National Academy of Sciences of the United States of America 108 2011 12283 12288
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 12283-12288
-
-
Kato, H.1
Van Ingen, H.2
Zhou, B.R.3
Feng, H.4
Bustin, M.5
Kay, L.E.6
Bai, Y.7
-
27
-
-
33644876458
-
TreeFam: A curated database of phylogenetic trees of animal gene families
-
H. Li, A. Coghlan, J. Ruan, L.J. Coin, J.K. Heriche, L. Osmotherly, R. Li, T. Liu, Z. Zhang, L. Bolund, G.K. Wong, W. Zheng, P. Dehal, J. Wang, and R. Durbin TreeFam: a curated database of phylogenetic trees of animal gene families Nucleic Acids Research 34 2006 D572 D580
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Li, H.1
Coghlan, A.2
Ruan, J.3
Coin, L.J.4
Heriche, J.K.5
Osmotherly, L.6
Li, R.7
Liu, T.8
Zhang, Z.9
Bolund, L.10
Wong, G.K.11
Zheng, W.12
Dehal, P.13
Wang, J.14
Durbin, R.15
-
28
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
R. Linding, L.J. Jensen, F. Diella, P. Bork, T.J. Gibson, and R.B. Russell Protein disorder prediction: implications for structural proteomics Structure 11 2003 1453 1459
-
(2003)
Structure
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
Jensen, L.J.2
Diella, F.3
Bork, P.4
Gibson, T.J.5
Russell, R.B.6
-
29
-
-
81555225908
-
The expanding view of protein-protein interactions: Complexes involving intrinsically disordered proteins
-
B. Meszaros, I. Simon, and Z. Dosztanyi The expanding view of protein-protein interactions: complexes involving intrinsically disordered proteins Physical Biology 8 2011 035003
-
(2011)
Physical Biology
, vol.8
, pp. 035003
-
-
Meszaros, B.1
Simon, I.2
Dosztanyi, Z.3
-
31
-
-
33744829805
-
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
-
Y. Minezaki, K. Homma, A.R. Kinjo, and K. Nishikawa Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation Journal of Molecular Biology 359 2006 1137 1149
-
(2006)
Journal of Molecular Biology
, vol.359
, pp. 1137-1149
-
-
Minezaki, Y.1
Homma, K.2
Kinjo, A.R.3
Nishikawa, K.4
-
35
-
-
33645214608
-
Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
-
A. Patil, and H. Nakamura Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks FEBS Letters 580 2006 2041 2045
-
(2006)
FEBS Letters
, vol.580
, pp. 2041-2045
-
-
Patil, A.1
Nakamura, H.2
-
36
-
-
13444306641
-
NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
K.D. Pruitt, T. Tatusova, and D.R. Maglott NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Nucleic Acids Research 33 2005 D501 D504
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
37
-
-
33847795359
-
Intrinsic disorder and functional proteomics
-
P. Radivojac, L.M. Iakoucheva, C.J. Oldfield, Z. Obradovic, V.N. Uversky, and A.K. Dunker Intrinsic disorder and functional proteomics Biophysical Journal 92 2007 1439 1456
-
(2007)
Biophysical Journal
, vol.92
, pp. 1439-1456
-
-
Radivojac, P.1
Iakoucheva, L.M.2
Oldfield, C.J.3
Obradovic, Z.4
Uversky, V.N.5
Dunker, A.K.6
-
38
-
-
33846099868
-
DisProt: The database of disordered proteins
-
M. Sickmeier, J.A. Hamilton, T. LeGall, V. Vacic, M.S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V.N. Uversky, Z. Obradovic, and A.K. Dunker DisProt: the database of disordered proteins Nucleic Acids Research 35 2007 D786 D793
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Sickmeier, M.1
Hamilton, J.A.2
Legall, T.3
Vacic, V.4
Cortese, M.S.5
Tantos, A.6
Szabo, B.7
Tompa, P.8
Chen, J.9
Uversky, V.N.10
Obradovic, Z.11
Dunker, A.K.12
-
39
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
C.J. Sigrist, L. Cerutti, N. Hulo, A. Gattiker, L. Falquet, M. Pagni, A. Bairoch, and P. Bucher PROSITE: a documented database using patterns and profiles as motif descriptors Briefings in Bioinformatics 3 2002 265 274
-
(2002)
Briefings in Bioinformatics
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Pagni, M.6
Bairoch, A.7
Bucher, P.8
-
40
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
R.S. Spolar, and M.T. Record Jr. Coupling of local folding to site-specific binding of proteins to DNA Science 263 1994 777 784
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, Jr.M.T.2
-
41
-
-
79957599007
-
Markov models of amino acid substitution to study proteins with intrinsically disordered regions
-
A.M. Szalkowski, and M. Anisimova Markov models of amino acid substitution to study proteins with intrinsically disordered regions PLoS ONE 6 2011 e20488
-
(2011)
PLoS ONE
, vol.6
, pp. 20488
-
-
Szalkowski, A.M.1
Anisimova, M.2
-
44
-
-
64849101493
-
Protein dynamism and evolvability
-
N. Tokuriki, and D.S. Tawfik Protein dynamism and evolvability Science 324 2009 203 207
-
(2009)
Science
, vol.324
, pp. 203-207
-
-
Tokuriki, N.1
Tawfik, D.S.2
-
45
-
-
0036803243
-
Intrinsically unstructured proteins
-
P. Tompa Intrinsically unstructured proteins Trends in Biochemical Sciences 27 2002 527 533
-
(2002)
Trends in Biochemical Sciences
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
46
-
-
20444376186
-
The interplay between structure and function in intrinsically unstructured proteins
-
P. Tompa The interplay between structure and function in intrinsically unstructured proteins FEBS Letters 579 2005 3346 3354
-
(2005)
FEBS Letters
, vol.579
, pp. 3346-3354
-
-
Tompa, P.1
-
47
-
-
33747191719
-
Prevalent structural disorder in E. coli and S. cerevisiae proteomes
-
P. Tompa, Z. Dosztanyi, and I. Simon Prevalent structural disorder in E. coli and S. cerevisiae proteomes Journal of Proteome Research 5 2006 1996 2000
-
(2006)
Journal of Proteome Research
, vol.5
, pp. 1996-2000
-
-
Tompa, P.1
Dosztanyi, Z.2
Simon, I.3
-
48
-
-
14844325784
-
Robustness, evolvability, and neutrality
-
A. Wagner Robustness, evolvability, and neutrality FEBS Letters 579 2005 1772 1778
-
(2005)
FEBS Letters
, vol.579
, pp. 1772-1778
-
-
Wagner, A.1
-
49
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
J.J. Ward, J.S. Sodhi, L.J. McGuffin, B.F. Buxton, and D.T. Jones Prediction and functional analysis of native disorder in proteins from the three kingdoms of life Journal of Molecular Biology 337 2004 635 645
-
(2004)
Journal of Molecular Biology
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
50
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Z. Yang PAML: a program package for phylogenetic analysis by maximum likelihood Computer Applications in the Biosciences 13 1997 555 556
-
(1997)
Computer Applications in the Biosciences
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
51
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Z. Yang, and R. Nielsen Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Molecular Biology and Evolution 17 2000 32 43
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
|