Conformational variability of matrix metalloproteinases: Beyond a single 3D structure

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 15, 2005, Pages 5334-5339

  Bertini, Ivano ^a   Calderone, Vito ^a,b   Cosenza, Marta ^a   Fragai, Marco ^a   Lee, Yong Min ^a   Luchinat, Claudio ^a   Mangani, Stefano ^a,b   Terni, Beatrice ^a   Turano, Paola ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

^b UNIVERSITY OF SIENA   (Italy)

Author keywords

Macrophage metalloelastase; Protein mobility; Solution structure; X ray structure

Indexed keywords

CRYSTALLIN; MATRIX METALLOPROTEINASE;

ARTICLE; CATALYSIS; CONFORMATION; CRYSTAL STRUCTURE; DIPOLE; ENZYME SPECIFICITY; ENZYME STRUCTURE; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN VARIANT; X RAY ANALYSIS;

CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; HYDROXAMIC ACIDS; MATRIX METALLOPROTEINASE 12; METALLOENDOPEPTIDASES; MODELS, MOLECULAR; MOVEMENT; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; SULFONAMIDES; TIME FACTORS;

EID: 17244369458     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0407106102     Document Type: Article

References (34)

1. Birkedal-Hansen, H. (1995) Curr. Opin. Cell Biol. 7, 728-735.
2. Murphy, G. J. P., Murphy, G. & Reynolds, J. J. (1991) FEBS Lett. 289, 4-7.
3. Stetler-Stevenson, W. G., Hewitt, R. & Corcoron, M. (1996) Semin. Cancer Biol. 7, 147-154.
4. Borkakoti, N. (2000) J. Mol. Med. 78, 261-268.
5. Steinman, L. (1996) Cell 85, 299-302.
6. Whittaker, M., Floyd, C. D., Brown, P. & Gearing, A. J. H. (1999) Chem. Rev. 99, 2735-2776.
7. Lukacova, V., Zhang, Y., Mackov, M., Baricic, P., Raha, S., Calvo, J. A. & Balaz, S. (2004) J. Biol. Chem. 279, 14194-14200.
8. Borkakoti, N. (2004) Biochem. Soc. Trans. 32, 17-20.
9. Coussens, L. M., Fingleton, B. & Matrisian, L. M. (2002) Science 295, 2387-2392.
10. Pavlaki, M. & Zucker, S. (2003) Cancer Metast. Rev. 22, 177-203.
11. Moy, F. J., Chanda, P. K., Chen, J., Cosmi, S., Edris, W., Levin, J. I., Rush, T. S., Wilhelm, J. & Powers, R. (2002) J. Am. Chem. Soc. 124, 12658-12659.
12. Banci, L., Bertini, I., Chilli, A., Fragai, M., Luchinat, C. & Terni, B. (2003) J. Mol. Cat. A Chem. 204-205, 401-408.
13. Güntert, P., Mumenthaler, C. & Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298.
14. Koradi, R., Billeter, M. & Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.
15. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
16. Laskowski, R. A., Rullmann, J. A. C., MacArthur, M. W., Kaptein, R. & Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486.
17. Case, D. A., Pearlman, D. A., Caldwell, J. W., Cheatham, T. E., Ross, W. S., Simmerling, C. L., Darden, T. A., Merz, K. M., Stanton, R. V., Cheng, A. L., et al. (1999) AMBER (University of California, San Francisco), Version 6.0.
18. Bertini, I., Calderone, V., Fragai, M., Luchinat, C. Mangani, S. & Terni, B. (2003) Angew. Chem. Int. Ed. 42, 2673-2676.
19. Bertini, I., Calderone, V., Fragai, M., Luchinat, C., Mangani, S. & Terni, B. (2004) J. Mol. Biol. 336, 707-716.
20. Lang, R., Kocourek, A., Braun, M., Tschesche, H., Huber, R., Bode, W. & Maskos, K. (2001) J. Mol. Biol. 312, 731-742.
21. Prestegard, J. H., Bougault C. M. & Kishore A. I. (2004) Chem. Rev. 104, 3519-3540.
22. Kay, L. E., Torchia, D. A. & Bax, A. (1989) Biochemistry 28, 8972-8979.
23. Palmer, A. G., III, Skelton, N. J., Chazin, W. J., Wright, P. E. & Rance, M. (1992) Mol. Phys. 75, 699-711.
24. Barbato, G., Ikura, M., Kay, L. E., Pastor, R. W. & Bax, A. (1992) Biochemistry 31, 5269-5278.
25. Kay, L. E., Nicholson, L. K., Delaglio, F., Bax, A. & Torchia, D. A. (1992) J. Magn. Reson. 97, 359-375.
26. Longhi, S., Nicolas, A., Creveld, L., Egmond, M., Verrips, C. T., de Vlieg, J., Martinez, C. & Cambillau, C. (1996) Proteins Struct. Funct. Genet. 26, 442-458.
27. Parri, L. & Mangani, S. (1998) Inorg. Chim. Acta 275-276, 349-358.
28. Moy, F. J., Chanda, P. K., Cosmi, S., Pisano, M. R., Urbano, C., Wilhelm, J. & Powers, R. (1998) Biochemistry, 37, 1495-1504.
29. Feng, Y., Likos, J. J., Zhu, L., Woodward, H., Munie, G., McDonald, J. J., Stevens, A. M., Howard, C. P., De Crescenzo, G. A., Welsch, D., et al. (2002) Biochim. Biophys. Acta 1598, 10-23.
30. Van Doren, S. R., Kurochkin, A. V., Hu, W., Ye, Q.-Z., Johnson, L. L., Hupe, D. J. & Zuiderweg, E. R. P. (1995) Protein Sci. 4, 2487-2798.
31. Li, Y.-C., Zhang, X., Melton, R., Ganu, V. & Gonnella, N. C. (1998) Biochemistry 37, 14048-14056.
32. Gooley, P. R., O'Connell, J. F., Marcy, A. I., Cuca, G. C., Salowe, S. P., Bush, B. L., Hermes, J. D., Esser, C. K., Hagmann, W. K., Springer, J. P. & Johnson, B. A. (1994) Nat. Strut. Biol. 1, 111-118.
33. Moy, F. J., Chanda, P. K., Chen, J. M., Cosmi, S., Edris, W., Levin, J. I. & Powers, R. (2000) J. Mol. Biol. 302, 671-689.
34. Zhang, X., Gonnella, N. C., Koehn, J., Pathak, N., Ganu, V., Melton, R., Parker, D., Hu, S.-I. & Nam, K.-Y. (2000) J. Mol. Biol. 301, 513-524.