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Volumn 36, Issue SUPPL. 1, 2008, Pages

InParanoid 6: Eukaryotic ortholog clusters with inparalogs

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

EID: 38549122308     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm1020     Document Type: Article
Times cited : (190)

References (12)
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    • Fitch, W.M.1
  • 2
    • 0036889686 scopus 로고    scopus 로고
    • Orthology, paralogy and proposed classification for paralog subtypes
    • Sonnhammer, E.L.L. and Koonin, E.V. (2002) Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet., 18 619-620.
    • (2002) Trends Genet , vol.18 , pp. 619-620
    • Sonnhammer, E.L.L.1    Koonin, E.V.2
  • 3
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and In-paralogs from pairwise species comparisons
    • Remm, M., Storm, C.E.V. and Sonnhammer, E.L.L. (2001) Automatic clustering of orthologs and In-paralogs from pairwise species comparisons. J. Mot. Behav., 314, 1041-1052.
    • (2001) J. Mot. Behav , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.V.2    Sonnhammer, E.L.L.3
  • 4
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: A comprehensive database of eukaryotic orthologs
    • O'Brien, Remm, M and Sonnhammer, E.L.L. (2005) Inparanoid: A comprehensive database of eukaryotic orthologs. Nucleic Acids Res. 33, D476-D480.
    • (2005) Nucleic Acids Res , vol.33
    • O'Brien, R.M.1    Sonnhammer, E.L.L.2
  • 7
    • 33746234722 scopus 로고    scopus 로고
    • Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits
    • Dessimoz, C., Boeckmann, B., Roth, A.C. and Gonnet, G.H. (2006) Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits. Nucleic Acids Res., 34, 3309-3316.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3309-3316
    • Dessimoz, C.1    Boeckmann, B.2    Roth, A.C.3    Gonnet, G.H.4
  • 9
    • 33745022802 scopus 로고    scopus 로고
    • Benchmarking ortholog identification methods using functional genomics data
    • Hulsen, T., Huynen, M.A., de Vlieg, J. and Groenen, P.M. (2006) Benchmarking ortholog identification methods using functional genomics data. Genome Biol., 7, R31.
    • (2006) Genome Biol , vol.7
    • Hulsen, T.1    Huynen, M.A.2    de Vlieg, J.3    Groenen, P.M.4
  • 10
    • 37849023306 scopus 로고    scopus 로고
    • Assessing performance of orthology detection strategies applied to eukaryotic genomes
    • Chen, F., Mackey, A.J., Vermunt, J.K. and Roos, D.S. (2007) Assessing performance of orthology detection strategies applied to eukaryotic genomes. PLoS ONE, 2, e383.
    • (2007) PLoS ONE , vol.2
    • Chen, F.1    Mackey, A.J.2    Vermunt, J.K.3    Roos, D.S.4
  • 12
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    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • Chimpanzee Sequencing and Analysis Consortium
    • Chimpanzee Sequencing and Analysis Consortium (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437, 69-87.
    • (2005) Nature , vol.437 , pp. 69-87


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