-
1
-
-
79952232216
-
Global cancer statistics
-
Jemal, A.; Bray, F.; Center, M.M.; Ferlay, J.; Word, E.; Forman, D. Global cancer statistics. CA Cancer J. Clin. 2011, 61, 69-90.
-
(2011)
CA Cancer J. Clin
, vol.61
, pp. 69-90
-
-
Jemal, A.1
Bray, F.2
Center, M.M.3
Ferlay, J.4
Word, E.5
Forman, D.6
-
2
-
-
77953286172
-
Serum amyloid A is elevated in the serum of lung cancer patients with poor prognosis
-
Cho, W.C.; Yip, T.T.; Cheng, W.W.; Au, J.S. Serum amyloid A is elevated in the serum of lung cancer patients with poor prognosis. Br. J. Cancer 2010, 102, 1731-1735.
-
(2010)
Br. J. Cancer
, vol.102
, pp. 1731-1735
-
-
Cho, W.C.1
Yip, T.T.2
Cheng, W.W.3
Au, J.S.4
-
3
-
-
79951900556
-
Proteomics and translational medicine: Molecular biomarkers for cancer diagnosis, prognosis and prediction of therapy outcome
-
Cho, W.C. Proteomics and translational medicine: Molecular biomarkers for cancer diagnosis, prognosis and prediction of therapy outcome. Expert Rev. Proteomics 2011, 8, 1-4.
-
(2011)
Expert Rev. Proteomics
, vol.8
, pp. 1-4
-
-
Cho, W.C.1
-
4
-
-
84863053122
-
Identification of isocitrate dehydrogenase 1 as a potential diagnostic and prognostic biomarker for non-small cell lung cancer by proteomic analysis
-
doi:10.1074/mcp.M111.008821
-
Tan, F.; Jiang, Y.; Sun, N.; Chen, Z.; Lv, Y.; Shao, K.; Li, N.; Qiu, B.; Gao, Y.; Li, B.; et al. Identification of isocitrate dehydrogenase 1 as a potential diagnostic and prognostic biomarker for non-small cell lung cancer by proteomic analysis. Mol. Cell Proteomics 2012, 11, doi:10.1074/mcp.M111.008821.
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Tan, F.1
Jiang, Y.2
Sun, N.3
Chen, Z.4
Lv, Y.5
Shao, K.6
Li, N.7
Qiu, B.8
Gao, Y.9
Li, B.10
-
5
-
-
84867784579
-
Quantitative proteomics reveals regulation of KPNA2 and its potential novel cargo proteins in non-small cell lung cancer
-
doi:10.1074/mcp.M111.016592
-
Wang, C.I.; Chien, K.Y.; Wang, C.L.; Liu, H.P.; Cheng, C.C.; Chang, Y.S.; Yu, J.S.; Yu, C.J. Quantitative proteomics reveals regulation of KPNA2 and its potential novel cargo proteins in non-small cell lung cancer. Mol. Cell Proteomics 2012, doi:10.1074/mcp.M111.016592.
-
(2012)
Mol. Cell Proteomics
-
-
Wang, C.I.1
Chien, K.Y.2
Wang, C.L.3
Liu, H.P.4
Cheng, C.C.5
Chang, Y.S.6
Yu, J.S.7
Yu, C.J.8
-
6
-
-
80054698820
-
Rapid and reproducible single-stage phosphopeptide enrichment of complex peptide mixtures: Application to general and phosphotyrosine-specific phosphoproteomics experiments
-
Kettenbach, A.N.; Gerber, S.A. Rapid and reproducible single-stage phosphopeptide enrichment of complex peptide mixtures: Application to general and phosphotyrosine-specific phosphoproteomics experiments. Anal. Chem. 2011, 83, 7635-7644.
-
(2011)
Anal. Chem
, vol.83
, pp. 7635-7644
-
-
Kettenbach, A.N.1
Gerber, S.A.2
-
7
-
-
84856735736
-
A review of current proteomics technologies with a survey on their widespread use in reproductive biology investigations
-
Wright, P.C.; Noirel, J.; Ow, S.Y.; Fazeli, A. A review of current proteomics technologies with a survey on their widespread use in reproductive biology investigations. Theriogenology 2012, 77, 738-765.
-
(2012)
Theriogenology
, vol.77
, pp. 738-765
-
-
Wright, P.C.1
Noirel, J.2
Ow, S.Y.3
Fazeli, A.4
-
8
-
-
84856614421
-
Ion mobility-mass spectrometry for structural proteomics
-
Zhong, Y.; Hyung, S.J.; Ruotolo, B.T. Ion mobility-mass spectrometry for structural proteomics. Expert Rev. Proteomics 2012, 9, 47-58.
-
(2012)
Expert Rev. Proteomics
, vol.9
, pp. 47-58
-
-
Zhong, Y.1
Hyung, S.J.2
Ruotolo, B.T.3
-
9
-
-
84856392676
-
Mass spectrometry-based proteomics in preclinical drug discovery
-
Schirle, M.; Bantscheff, M.; Kuster, B. Mass spectrometry-based proteomics in preclinical drug discovery. Chem. Biol. 2012, 19, 72-84.
-
(2012)
Chem. Biol
, vol.19
, pp. 72-84
-
-
Schirle, M.1
Bantscheff, M.2
Kuster, B.3
-
10
-
-
84855419576
-
Visualization and identification of health space, based on personalized molecular phenotype and treatment response to relevant underlying biological processes
-
doi:10.1186/1755-8794-5-1
-
Bouwman, J.; Vogels, J.T.; Wopereis, S.; Rubingh, C.M.; Bijlsma, S.; van Ommen, B. Visualization and identification of health space, based on personalized molecular phenotype and treatment response to relevant underlying biological processes. BMC Med. Genomics 2012, 5, doi:10.1186/1755-8794-5-1.
-
(2012)
BMC Med. Genomics
, vol.5
-
-
Bouwman, J.1
Vogels, J.T.2
Wopereis, S.3
Rubingh, C.M.4
Bijlsma, S.5
van Ommen, B.6
-
11
-
-
79954988552
-
Proteomics reveals potential biomarkers of seed vigor in sugarbeet
-
Catusse, J.; Meinhard, J.; Job, C.; Strub, J.M.; Fischer, U.; Pestsova, E.; Westhoff, P.; van Dorsselaer, A.; Job, D. Proteomics reveals potential biomarkers of seed vigor in sugarbeet. Proteomics 2011, 11, 1569-1580.
-
(2011)
Proteomics
, vol.11
, pp. 1569-1580
-
-
Catusse, J.1
Meinhard, J.2
Job, C.3
Strub, J.M.4
Fischer, U.5
Pestsova, E.6
Westhoff, P.7
van Dorsselaer, A.8
Job, D.9
-
12
-
-
84862827392
-
Technical phosphoproteomic and bioinformatic tools useful in cancer research
-
doi:10.1186/2043-9113-1-26
-
López, E.; Wesselink, J.J.; López, I.; Mendieta, J.; Gómez-Puertas, P.; Muñoz, S.R. Technical phosphoproteomic and bioinformatic tools useful in cancer research. J. Clin. Bioinforma. 2011, 1, doi:10.1186/2043-9113-1-26.
-
(2011)
J. Clin. Bioinforma
, vol.1
-
-
López, E.1
Wesselink, J.J.2
López, I.3
Mendieta, J.4
Gómez-Puertas, P.5
Muñoz, S.R.6
-
13
-
-
84871925671
-
Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by phosphoproteomic and bioinformatic tools
-
doi:10.1186/2043-9113-1-16
-
López, E.; López, I.; Sequí, J.; Ferreira, A. Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by phosphoproteomic and bioinformatic tools. J. Clin. Bioinforma. 2011, 1, doi:10.1186/2043-9113-1-16.
-
(2011)
J. Clin. Bioinforma
, vol.1
-
-
López, E.1
López, I.2
Sequí, J.3
Ferreira, A.4
-
14
-
-
79957821996
-
Clinical and technical phosphoproteomic research
-
doi:10.1186/1477-5956-9-27
-
López, E.; López, I.; Ferreira, A.; Sequí, J. Clinical and technical phosphoproteomic research. Proteome Sci. 2011, 9, doi:10.1186/1477-5956-9-27.
-
(2011)
Proteome Sci
, vol.9
-
-
López, E.1
López, I.2
Ferreira, A.3
Sequí, J.4
-
15
-
-
12444323307
-
Company
-
4th ed.; W.H. Freeman: New York, NY, USA
-
Lodish, H.; Berk, A.; Zipursky, S.L.; Matsudaira, P.; Baltimore, D.; Darnell, J. Company. Molecular Cell Biology, 4th ed.; W.H. Freeman: New York, NY, USA, 2002.
-
(2002)
Molecular Cell Biology
-
-
Lodish, H.1
Berk, A.2
Zipursky, S.L.3
Matsudaira, P.4
Baltimore, D.5
Darnell, J.6
-
16
-
-
0004155427
-
-
4th ed.; W.H. Freeman: New York, NY, USA
-
Stryer, L. Biochemistry, 4th ed.; W.H. Freeman: New York, NY, USA, 1995.
-
(1995)
Biochemistry
-
-
Stryer, L.1
-
17
-
-
0036168865
-
Methylation at arginine 17 of histone H3 is linked to gene activation
-
Bauer, U.T.; Daujat, S.; Nielsen, S.J.; Nightingale, K.; Kouzarides, T. Methylation at arginine 17 of histone H3 is linked to gene activation. EMBO Rep. 2002, 33, 39-44.
-
(2002)
EMBO Rep
, vol.33
, pp. 39-44
-
-
Bauer, U.T.1
Daujat, S.2
Nielsen, S.J.3
Nightingale, K.4
Kouzarides, T.5
-
18
-
-
84866756851
-
Synthesis and biological evaluation of ortho-Aryl N-Hydroxycinnamides as potent histone deacetylase (HDAC) 8 isoform-selective inhibitors
-
doi:10.1002/cmdc.201200300
-
Huang, W.J.; Wang, Y.C.; Chao, S.W.; Yang, C.Y.; Chen, L.C.; Lin, M.H.; Hou, W.C.; Chen, M.Y.; Lee, T.L.; Yang, P.; et al. Synthesis and biological evaluation of ortho-Aryl N-Hydroxycinnamides as potent histone deacetylase (HDAC) 8 isoform-selective inhibitors. Chem Med Chem 2012, doi:10.1002/cmdc.201200300.
-
(2012)
Chem Med Chem
-
-
Huang, W.J.1
Wang, Y.C.2
Chao, S.W.3
Yang, C.Y.4
Chen, L.C.5
Lin, M.H.6
Hou, W.C.7
Chen, M.Y.8
Lee, T.L.9
Yang, P.10
-
19
-
-
84862792039
-
Global histone modification pattern associated with recurrence and disease-free survival in non-small cell lung cancer patients
-
Song, J.S.; Kim, Y.S.; Kim, D.K.; Park, S.I.; Jang, S.J. Global histone modification pattern associated with recurrence and disease-free survival in non-small cell lung cancer patients. Pathol. Int. 2012, 62, 182-190.
-
(2012)
Pathol. Int
, vol.62
, pp. 182-190
-
-
Song, J.S.1
Kim, Y.S.2
Kim, D.K.3
Park, S.I.4
Jang, S.J.5
-
20
-
-
77953698631
-
Differential serum level of specific haptoglobin isoforms in small cell lung cancer
-
Shah, A.; Singh, H.; Sachdev, V.; Lee, J.; Yotsukura, S.; Salgia, R.; Bharti, A. Differential serum level of specific haptoglobin isoforms in small cell lung cancer. Curr. Proteomics 2010, 7, 49-65.
-
(2010)
Curr. Proteomics
, vol.7
, pp. 49-65
-
-
Shah, A.1
Singh, H.2
Sachdev, V.3
Lee, J.4
Yotsukura, S.5
Salgia, R.6
Bharti, A.7
-
21
-
-
84865994665
-
Functional analysis of receptor tyrosine kinase mutations in lung cancer identifies oncogenic extracellular domain mutations of ERBB2
-
Greulich, H.; Kaplan, B.; Mertins, P.; Chen, T.H.; Tanaka, K.E.; Yun, C.H.; Zhang, X.; Lee, S.H.; Cho, J.; Ambrogio, L.; et al. Functional analysis of receptor tyrosine kinase mutations in lung cancer identifies oncogenic extracellular domain mutations of ERBB2. Proc. Natl. Acad. Sci. USA. 2012, 109, 14476-14481.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 14476-14481
-
-
Greulich, H.1
Kaplan, B.2
Mertins, P.3
Chen, T.H.4
Tanaka, K.E.5
Yun, C.H.6
Zhang, X.7
Lee, S.H.8
Cho, J.9
Ambrogio, L.10
-
22
-
-
84867824272
-
Smoking and lung cancer-induced changes in N-glycosylation of blood serum proteins
-
doi:10.1093/glycob/cws108
-
Vasseur, J.A.; Goetz, J.A.; Alley, W.R., Jr.; Novotny, M.V. Smoking and lung cancer-induced changes in N-glycosylation of blood serum proteins. Glycobiology 2012, doi:10.1093/glycob/cws108.
-
(2012)
Glycobiology
-
-
Vasseur, J.A.1
Goetz, J.A.2
Alley Jr., W.R.3
Novotny, M.V.4
-
24
-
-
84880263616
-
Epigenetic screen identifies genotype-specific promoter DNA methylation and oncogenic potential of CHRNB4
-
doi:10.1038/onc.2012,344
-
Scherf, D.B.; Sarkisyan, N.; Jacobsson, H.; Claus, R.; Bermejo, J.L.; Peil, B.; Gu, L.; Muley, T.; Meister, M.; Dienemann, H.; et al. Epigenetic screen identifies genotype-specific promoter DNA methylation and oncogenic potential of CHRNB4. Oncogene 2012, doi:10.1038/onc.2012,344.
-
(2012)
Oncogene
-
-
Scherf, D.B.1
Sarkisyan, N.2
Jacobsson, H.3
Claus, R.4
Bermejo, J.L.5
Peil, B.6
Gu, L.7
Muley, T.8
Meister, M.9
Dienemann, H.10
-
25
-
-
84867760241
-
HER2 amplification: A potential mechanism of acquired resistance to EGFR inhibition in EGFR mutant lung cancers that lack the second-site EGFR T790M mutation
-
doi:10.1158/2159-8290
-
Takezawa, K.; Pirazzoli, V.; Arcila, M.E.; Nebhan, C.A.; Song, X.; de Stanchina, E.; Ohashi, K.; Janjigian, Y.Y.; Spitzler, P.J.; Melnick, M.A.; et al. HER2 amplification: A potential mechanism of acquired resistance to EGFR inhibition in EGFR mutant lung cancers that lack the second-site EGFR T790M mutation. Cancer Discov. 2012, doi:10.1158/2159-8290.
-
(2012)
Cancer Discov
-
-
Takezawa, K.1
Pirazzoli, V.2
Arcila, M.E.3
Nebhan, C.A.4
Song, X.5
de Stanchina, E.6
Ohashi, K.7
Janjigian, Y.Y.8
Spitzler, P.J.9
Melnick, M.A.10
-
26
-
-
41149171707
-
Genetically encoding protein oxidative damage
-
Neumann, H.; Hazen, J.L.; Weinstein, J.; Mehl, R.A.; Chin, J.W. Genetically encoding protein oxidative damage. J. Am. Chem. Soc. 2008, 130, 4028-4033.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 4028-4033
-
-
Neumann, H.1
Hazen, J.L.2
Weinstein, J.3
Mehl, R.A.4
Chin, J.W.5
-
27
-
-
84875905943
-
The ubiquitin-specific protease USP2a prevents endocytosis-mediated EGFR degradation
-
doi:10.1038/onc.2012.188
-
Liu, Z.; Zanata, S.M.; Kim, J.; Peterson, M.A.; di Vizio, D.; Chirieac, L.R.; Pyne, S.; Agostini, M.; Freeman, M.R.; Loda, M. The ubiquitin-specific protease USP2a prevents endocytosis-mediated EGFR degradation. Oncogene 2012, doi:10.1038/onc.2012.188.
-
(2012)
Oncogene
-
-
Liu, Z.1
Zanata, S.M.2
Kim, J.3
Peterson, M.A.4
di Vizio, D.5
Chirieac, L.R.6
Pyne, S.7
Agostini, M.8
Freeman, M.R.9
Loda, M.10
-
28
-
-
84867770344
-
Functional phosphoproteomic mass spectrometry-based approaches
-
doi:10.1186/2001-1326-1-20
-
Lopez, E.; Wang, X.; Madero, L. Functional phosphoproteomic mass spectrometry-based approaches. Clin. Transl. Med. 2012, 1, doi:10.1186/2001-1326-1-20.
-
(2012)
Clin. Transl. Med
, vol.1
-
-
Lopez, E.1
Wang, X.2
Madero, L.3
-
29
-
-
0027277098
-
On target with a new mechanism for the regulation of protein-phosphorylation trends
-
Hubbard, M.J.; Cohen, P. On target with a new mechanism for the regulation of protein-phosphorylation trends. Biochem. Sci. 1993, 18, 172-177.
-
(1993)
Biochem. Sci
, vol.18
, pp. 172-177
-
-
Hubbard, M.J.1
Cohen, P.2
-
30
-
-
84863754137
-
Supramolecular organisation of the mitochondrial respiratory chain: A new challenge for the mechanism and control of oxidative phosphorylation
-
Lenaz, G.; Genova, M.L. Supramolecular organisation of the mitochondrial respiratory chain: A new challenge for the mechanism and control of oxidative phosphorylation. Adv. Exp. Med. Biol. 2012, 748, 107-144.
-
(2012)
Adv. Exp. Med. Biol
, vol.748
, pp. 107-144
-
-
Lenaz, G.1
Genova, M.L.2
-
31
-
-
0036605185
-
Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome
-
Mann, M.; Ong, S.E.; Grønborg, M.; Steen, H.; Jensen, O.N.; Pandey, A. Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome. Trends Biotechnol. 2002, 20, 261-268.
-
(2002)
Trends Biotechnol
, vol.20
, pp. 261-268
-
-
Mann, M.1
Ong, S.E.2
Grønborg, M.3
Steen, H.4
Jensen, O.N.5
Pandey, A.6
-
32
-
-
0037338365
-
Proteomic analysis of post-translational modifications
-
Mann, M.; Jensen, O.N. Proteomic analysis of post-translational modifications. Nat. Biotechnol. 2003, 21, 255-261.
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
33
-
-
0026816449
-
Oncogenes and cancer suppressor genes
-
Yarbro, J.W. Oncogenes and cancer suppressor genes. Semin. Oncol. Nurs. 1992, 8, 30-39.
-
(1992)
Semin. Oncol. Nurs
, vol.8
, pp. 30-39
-
-
Yarbro, J.W.1
-
34
-
-
0031812353
-
Nm23: An invasion suppressor gene in CNS tumours
-
Martin, K.K.; Pilkington, G.J. Nm23: An invasion suppressor gene in CNS tumours? Anticancer Res. 1998, 18, 919-926.
-
(1998)
Anticancer Res
, vol.18
, pp. 919-926
-
-
Martin, K.K.1
Pilkington, G.J.2
-
35
-
-
0346969605
-
Cell cycle modulators for the treatment of lung malignancies
-
Senderowicz, A.M. Cell cycle modulators for the treatment of lung malignancies. Clin. Lung Cancer 2003, 5, 158-168.
-
(2003)
Clin. Lung Cancer
, vol.5
, pp. 158-168
-
-
Senderowicz, A.M.1
-
36
-
-
34547614077
-
P53 activation in response to mitotic spindle damage requires signaling via BubR1-mediated phosphorylation
-
Ha, G.H.; Baek, K.H.; Kim, H.S.; Jeong, S.J.; Kim, C.M.; McKeon, F.; Lee, C.W. p53 activation in response to mitotic spindle damage requires signaling via BubR1-mediated phosphorylation. Cancer Res. 2007, 67, 7155-7164.
-
(2007)
Cancer Res
, vol.67
, pp. 7155-7164
-
-
Ha, G.H.1
Baek, K.H.2
Kim, H.S.3
Jeong, S.J.4
Kim, C.M.5
McKeon, F.6
Lee, C.W.7
-
37
-
-
0034657447
-
IL-3 signaling and the role of Src kinases, JAKs and STATs: A covert liaison unveiled
-
Reddy, E.P.; Korapati, A.; Chaturvedi, P.; Rane, S. IL-3 signaling and the role of Src kinases, JAKs and STATs: A covert liaison unveiled. Oncogene 2000, 19, 2532-2547.
-
(2000)
Oncogene
, vol.19
, pp. 2532-2547
-
-
Reddy, E.P.1
Korapati, A.2
Chaturvedi, P.3
Rane, S.4
-
38
-
-
0037071409
-
JAKs, STATs and Src kinases in hematopoiesis
-
Rane, S.G.; Reddy, E.P. JAKs, STATs and Src kinases in hematopoiesis. Oncogene 2002, 21, 3334-3358.
-
(2002)
Oncogene
, vol.21
, pp. 3334-3358
-
-
Rane, S.G.1
Reddy, E.P.2
-
39
-
-
34347210289
-
An update on malignant melanoma vaccine research: Insights into mechanisms for improving the design and potency of melanoma therapeutic vaccines
-
Ralph, S.J. An update on malignant melanoma vaccine research: Insights into mechanisms for improving the design and potency of melanoma therapeutic vaccines. Am. J. Clin. Dermatol. 2007, 8, 123-141.
-
(2007)
Am. J. Clin. Dermatol
, vol.8
, pp. 123-141
-
-
Ralph, S.J.1
-
40
-
-
35348907987
-
Protein kinases as small molecule inhibitor targets in inflammation
-
Gaestel, M.; Mengel, A.; Bothe, U.; Asadullah, K. Protein kinases as small molecule inhibitor targets in inflammation. Curr. Med. Chem. 2007, 14, 2214-2234.
-
(2007)
Curr. Med. Chem
, vol.14
, pp. 2214-2234
-
-
Gaestel, M.1
Mengel, A.2
Bothe, U.3
Asadullah, K.4
-
41
-
-
34548721023
-
Protein kinases as targets for cancer treatment
-
Giamas, G.; Stebbing, J.; Vorgias, C.E.; Knippschild, U. Protein kinases as targets for cancer treatment. Pharmacogenomics 2007, 8, 1005-1016.
-
(2007)
Pharmacogenomics
, vol.8
, pp. 1005-1016
-
-
Giamas, G.1
Stebbing, J.2
Vorgias, C.E.3
Knippschild, U.4
-
42
-
-
39549084750
-
Novel therapeutic targets in bladder cancer: Mutation and expression of FGF receptors
-
Knowles, M.A. Novel therapeutic targets in bladder cancer: Mutation and expression of FGF receptors. Future Oncol. 2008, 4, 71-83.
-
(2008)
Future Oncol
, vol.4
, pp. 71-83
-
-
Knowles, M.A.1
-
43
-
-
1042275615
-
Modification-specific proteomics: Characterization of post-translational modifications by mass spectrometry
-
Jensen, O.N. Modification-specific proteomics: Characterization of post-translational modifications by mass spectrometry. Curr. Opin. Chem. Biol. 2004, 8, 33-41.
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 33-41
-
-
Jensen, O.N.1
-
44
-
-
33748310730
-
Phosphoprotein analysis: From proteins to proteomes
-
doi:10.1186/1477-5956-4-15
-
Delom, F.; Chevet, E. Phosphoprotein analysis: From proteins to proteomes. Proteome Sci. 2006, 4, doi:10.1186/1477-5956-4-15.
-
(2006)
Proteome Sci
, vol.4
-
-
Delom, F.1
Chevet, E.2
-
45
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro, S.B.; McCleland, M.L.; Stukenberg, P.T.; Burke, D.J.; Ross, M.M.; Shabanowitz, J.; Hunt, D.F.; White, F.M. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 2002, 20, 301-305.
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
46
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler, A.; Olsen, J.V.; Mohammed, S.; Mortensen, P.; Faergeman, N.J.; Mann, M.; Jensen, O.N. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 2005, 4, 310-327.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
Mortensen, P.4
Faergeman, N.J.5
Mann, M.6
Jensen, O.N.7
-
47
-
-
33947584417
-
Large-scale phosphorylation analysis of α-factor-arrested Saccharomyces cerevisiae
-
Li, X.; Gerber, S.A.; Rudner, A.D.; Beausoleil, S.A.; Haas, W.; Villén, J.; Elias, J.E.; Gygi, S.P. Large-scale phosphorylation analysis of α-factor-arrested Saccharomyces cerevisiae. J. Proteome Res. 2007, 6, 1190-1197.
-
(2007)
J. Proteome Res
, vol.6
, pp. 1190-1197
-
-
Li, X.1
Gerber, S.A.2
Rudner, A.D.3
Beausoleil, S.A.4
Haas, W.5
Villén, J.6
Elias, J.E.7
Gygi, S.P.8
-
48
-
-
24944519450
-
Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
-
Larsen, M.R.; Thingholm, T.E.; Jensen, O.N.; Roepstorff, P.; Jorgensen, T.J. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol. Cell Proteomics 2005, 4, 873-886.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 873-886
-
-
Larsen, M.R.1
Thingholm, T.E.2
Jensen, O.N.3
Roepstorff, P.4
Jorgensen, T.J.5
-
49
-
-
36749031608
-
Highly efficient phosphopeptide enrichment by calcium phosphate precipitation combined with subsequent IMAC enrichment
-
Zhang, X.; Ye, J.; Jensen, O.N.; Roepstorff, P. Highly efficient phosphopeptide enrichment by calcium phosphate precipitation combined with subsequent IMAC enrichment. Mol. Cell. Proteomics 2007, 6, 2032-2042.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 2032-2042
-
-
Zhang, X.1
Ye, J.2
Jensen, O.N.3
Roepstorff, P.4
-
50
-
-
42649139982
-
SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides
-
Thingholm, T.E.; Jensen, O.N.; Robinson, P.J.; Larsen, M.R. SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides. Mol. Cell. Proteomics 2008, 7, 661-671.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 661-671
-
-
Thingholm, T.E.1
Jensen, O.N.2
Robinson, P.J.3
Larsen, M.R.4
-
51
-
-
37249053773
-
Peptide sequencing and characterization of post-translational modifications by enhanced ion-charging and liquid chromatography electron-transfer dissociation tandem mass spectrometry
-
Kjeldsen, F.; Giessing, A.M.; Ingrell, C.R.; Jensen, O.N. Peptide sequencing and characterization of post-translational modifications by enhanced ion-charging and liquid chromatography electron-transfer dissociation tandem mass spectrometry. Anal. Chem. 2007, 79, 9243-9252.
-
(2007)
Anal. Chem
, vol.79
, pp. 9243-9252
-
-
Kjeldsen, F.1
Giessing, A.M.2
Ingrell, C.R.3
Jensen, O.N.4
-
52
-
-
33845428734
-
Methodologies for characterizing phosphoproteins by mass spectrometry
-
Gafken, P.R.; Lampe, P.D. Methodologies for characterizing phosphoproteins by mass spectrometry. Cell Commun. Adhes. 2006, 13, 249-262.
-
(2006)
Cell Commun. Adhes
, vol.13
, pp. 249-262
-
-
Gafken, P.R.1
Lampe, P.D.2
-
53
-
-
2642583142
-
Improved detection of hydrophilic phosphopeptides using graphite powder microcolumns and mass spectrometry: Evidence for in vivo doubly phosphorylated dynamin I and dynamin III
-
Larsen, M.R.; Graham, M.E.; Robinson, P.J.; Roepstorff, P. Improved detection of hydrophilic phosphopeptides using graphite powder microcolumns and mass spectrometry: Evidence for in vivo doubly phosphorylated dynamin I and dynamin III. Mol. Cell. Proteomics 2004, 3, 456-465.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 456-465
-
-
Larsen, M.R.1
Graham, M.E.2
Robinson, P.J.3
Roepstorff, P.4
-
54
-
-
0033057707
-
Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry
-
Gobom, J.; Nordhoff, E.; Mirgorodskaya, E.; Ekman, R.; Roepstorff, P. Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry. J. Mass Spectrom. 1999, 34, 105-116.
-
(1999)
J. Mass Spectrom
, vol.34
, pp. 105-116
-
-
Gobom, J.1
Nordhoff, E.2
Mirgorodskaya, E.3
Ekman, R.4
Roepstorff, P.5
-
55
-
-
36248934589
-
Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques
-
Jensen, S.S.; Larsen, M.R. Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques. Rapid Commun. Mass Spectrom. 2007, 21, 3635-3645.
-
(2007)
Rapid Commun. Mass Spectrom
, vol.21
, pp. 3635-3645
-
-
Jensen, S.S.1
Larsen, M.R.2
-
56
-
-
82355185852
-
Titanium dioxide as chemo-affinity chromatographic sorbent of biomolecular compounds-Applications in acidic modification-specific proteomics
-
Engholm-Keller, K.; Larsen, M.R. Titanium dioxide as chemo-affinity chromatographic sorbent of biomolecular compounds-Applications in acidic modification-specific proteomics. J. Proteomics 2011, 75, 317-328.
-
(2011)
J. Proteomics
, vol.75
, pp. 317-328
-
-
Engholm-Keller, K.1
Larsen, M.R.2
-
57
-
-
63049113651
-
Analytical strategies for phosphoproteomics
-
Thingholm, T.E.; Jensen, O.N.; Larsen, M.R. Analytical strategies for phosphoproteomics. Proteomics 2009, 9, 1451-1468.
-
(2009)
Proteomics
, vol.9
, pp. 1451-1468
-
-
Thingholm, T.E.1
Jensen, O.N.2
Larsen, M.R.3
-
58
-
-
65349125322
-
Enrichment and separation of mono- and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis
-
Thingholm, T.E.; Jensen, O.N.; Larsen, M.R. Enrichment and separation of mono- and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis. Methods Mol. Biol. 2009, 527, 67-78.
-
(2009)
Methods Mol. Biol
, vol.527
, pp. 67-78
-
-
Thingholm, T.E.1
Jensen, O.N.2
Larsen, M.R.3
-
59
-
-
28644448658
-
Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry
-
Gruhler, A.; Schulze, W.X.; Matthiesen, R.; Mann, M.; Jensen, O.N. Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry. Mol. Cell Proteomics 2005, 4, 1697-1709.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1697-1709
-
-
Gruhler, A.1
Schulze, W.X.2
Matthiesen, R.3
Mann, M.4
Jensen, O.N.5
-
60
-
-
77954375657
-
Optimized IMAC-IMAC protocol for phosphopeptide recovery from complex biological samples
-
Ye, J.; Zhang, X.; Young, C.; Zhao, X.; Hao, Q.; Cheng, L.; Jensen, O.N. Optimized IMAC-IMAC protocol for phosphopeptide recovery from complex biological samples. J. Proteome Res. 2010, 9, 3561-3573.
-
(2010)
J. Proteome Res
, vol.9
, pp. 3561-3573
-
-
Ye, J.1
Zhang, X.2
Young, C.3
Zhao, X.4
Hao, Q.5
Cheng, L.6
Jensen, O.N.7
-
61
-
-
34347403192
-
Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications
-
Sugiyama, N.; Masuda, T.; Shinoda, K.; Nakamura, A.; Tomita, M.; Ishihama, Y. Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications. Mol. Cell. Proteomics 2007, 6, 1103-1109.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1103-1109
-
-
Sugiyama, N.1
Masuda, T.2
Shinoda, K.3
Nakamura, A.4
Tomita, M.5
Ishihama, Y.6
-
62
-
-
0033104322
-
Use of vapor-phase acid hydrolysis for mass spectrometric peptide mapping and protein identification
-
Gobom, J.; Mirgorodskaya, E.; Nordhoff, E.; Hojrup, P.; Roepstorff, P. Use of vapor-phase acid hydrolysis for mass spectrometric peptide mapping and protein identification. Anal. Chem. 1999, 71, 919-927.
-
(1999)
Anal. Chem
, vol.71
, pp. 919-927
-
-
Gobom, J.1
Mirgorodskaya, E.2
Nordhoff, E.3
Hojrup, P.4
Roepstorff, P.5
-
63
-
-
14944367556
-
Characterization of gel-separated glycoproteins using two-step proteolytic digestion combined with sequential microcolumns and mass spectrometry
-
Larsen, M.R.; Højrup, P.; Roepstorff, P. Characterization of gel-separated glycoproteins using two-step proteolytic digestion combined with sequential microcolumns and mass spectrometry. Mol. Cell. Proteomics 2005, 4, 107-119.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 107-119
-
-
Larsen, M.R.1
Højrup, P.2
Roepstorff, P.3
-
64
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 1996, 68, 850-858.
-
(1996)
Anal. Chem
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
65
-
-
1542400371
-
Mass spectrometric characterization of posttranslationally modified proteins-phosphorylation
-
Larsen, M.R. Mass spectrometric characterization of posttranslationally modified proteins-phosphorylation. Methods Mol. Biol. 2004, 251, 245-262.
-
(2004)
Methods Mol. Biol
, vol.251
, pp. 245-262
-
-
Larsen, M.R.1
-
66
-
-
84867153786
-
Systematic analysis of protein phosphorylation networks from phosphoproteomic data
-
doi:10.1074/mcp.M111.012625
-
Song, C.; Ye, M.; Liu, Z.; Cheng, H.; Jiang, X.; Han, G.; Songyang, Z.; Tan, Y.; Wang, H.; Ren, J.; et al. Systematic analysis of protein phosphorylation networks from phosphoproteomic data. Mol. Cell. Proteomics 2012, doi:10.1074/mcp.M111.012625.
-
(2012)
Mol. Cell. Proteomics
-
-
Song, C.1
Ye, M.2
Liu, Z.3
Cheng, H.4
Jiang, X.5
Han, G.6
Songyang, Z.7
Tan, Y.8
Wang, H.9
Ren, J.10
-
67
-
-
77949686964
-
Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis
-
Han, G.; Ye, M.; Liu, H.; Song, C.; Sun, D.; Wu, Y.; Jiang, X.; Chen, R.; Wang, C.; Wang, L.; et al. Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis. Electrophoresis 2010, 31, 1080-1089.
-
(2010)
Electrophoresis
, vol.31
, pp. 1080-1089
-
-
Han, G.1
Ye, M.2
Liu, H.3
Song, C.4
Sun, D.5
Wu, Y.6
Jiang, X.7
Chen, R.8
Wang, C.9
Wang, L.10
-
68
-
-
81855166733
-
IMAC/TiO(2) enrich for peptide modifications other than phosphorylation: Implications for chromatographic choice and database searching in phosphoproteomics
-
Worthington, J.; Cutillas, P.R.; Timms, J.F. IMAC/TiO(2) enrich for peptide modifications other than phosphorylation: Implications for chromatographic choice and database searching in phosphoproteomics. Proteomics 2011, 11, 4583-4587.
-
(2011)
Proteomics
, vol.11
, pp. 4583-4587
-
-
Worthington, J.1
Cutillas, P.R.2
Timms, J.F.3
-
69
-
-
0002844767
-
Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies
-
Speicher, K.D.; Kolbas, O.; Harper, S.; Speicher, D.W. Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies. J. Biomol. Tech. 2000, 11, 74-86.
-
(2000)
J. Biomol. Tech
, vol.11
, pp. 74-86
-
-
Speicher, K.D.1
Kolbas, O.2
Harper, S.3
Speicher, D.W.4
-
70
-
-
0034056940
-
The dynamic range of protein expression: A challenge for proteomic research
-
Corthals, G.L.; Wasinger, V.C.; Hochstrasser, D.F.; Sanchez, J.C. The dynamic range of protein expression: A challenge for proteomic research. Electrophoresis 2000, 21, 1104-1115.
-
(2000)
Electrophoresis
, vol.21
, pp. 1104-1115
-
-
Corthals, G.L.1
Wasinger, V.C.2
Hochstrasser, D.F.3
Sanchez, J.C.4
-
71
-
-
0036652968
-
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: Identification of a novel protein, Frigg, as a protein kinase A substrate
-
Grønborg, M.; Kristiansen, T.Z.; Stensballe, A.; Andersen, J.S.; Ohara, O.; Mann, M.; Jensen, O.N.; Pandey, A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Mol. Cell. Proteomics 2002, 1, 517-527.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 517-527
-
-
Grønborg, M.1
Kristiansen, T.Z.2
Stensballe, A.3
Andersen, J.S.4
Ohara, O.5
Mann, M.6
Jensen, O.N.7
Pandey, A.8
-
72
-
-
29144531357
-
Functional studies of protein tyrosine phosphatases with chemical approaches
-
Zhang, Z.Y. Functional studies of protein tyrosine phosphatases with chemical approaches. Biochim. Biophys. Acta 2005, 1754, 100-107.
-
(2005)
Biochim. Biophys. Acta
, vol.1754
, pp. 100-107
-
-
Zhang, Z.Y.1
-
73
-
-
0036176615
-
Phosphorylation and dephosphorylation of histidine residues in proteins
-
Klumpp, S.; Krieglstein, J. Phosphorylation and dephosphorylation of histidine residues in proteins. Eur. J. Biochem. 2002, 269, 1067-1071.
-
(2002)
Eur. J. Biochem
, vol.269
, pp. 1067-1071
-
-
Klumpp, S.1
Krieglstein, J.2
-
74
-
-
26444480814
-
Phosphoproteome analysis
-
Raggiaschi, R.; Gotta, S.; Terstappen, G.C. Phosphoproteome analysis. Biosci. Rep. 2005, 25, 33-44.
-
(2005)
Biosci. Rep
, vol.25
, pp. 33-44
-
-
Raggiaschi, R.1
Gotta, S.2
Terstappen, G.C.3
-
75
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10000 daltons
-
Karas, M.; Hillenkamp, F. Laser desorption ionization of proteins with molecular masses exceeding 10000 daltons. Anal. Chem. 1988, 60, 2299-2301.
-
(1988)
Anal. Chem
, vol.60
, pp. 2299-2301
-
-
Karas, M.1
Hillenkamp, F.2
-
76
-
-
0024438708
-
Electrospray ionization for mass spectrometry of large biomolecules
-
Fenn, J.B.; Mann, M.; Meng, C.K.; Wong, S.F.; Whitehouse, C.M. Electrospray ionization for mass spectrometry of large biomolecules. Science 1989, 246, 64-72.
-
(1989)
Science
, vol.246
, pp. 64-72
-
-
Fenn, J.B.1
Mann, M.2
Meng, C.K.3
Wong, S.F.4
Whitehouse, C.M.5
-
77
-
-
0029822412
-
Phosphopeptide analysis by matrix-assisted laser desorption time-of-flight mass spectrometry
-
Annan, R.S.; Carr, S.A. Phosphopeptide analysis by matrix-assisted laser desorption time-of-flight mass spectrometry. Anal. Chem. 1996, 68, 3413-3421.
-
(1996)
Anal. Chem
, vol.68
, pp. 3413-3421
-
-
Annan, R.S.1
Carr, S.A.2
-
78
-
-
0034909215
-
Quadrupole time-of-flight versus triple quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning
-
Steen, H.; Kuster, B.; Mann, M. Quadrupole time-of-flight versus triple quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning. J. Mass Spectrom. 2001, 36, 782-790.
-
(2001)
J. Mass Spectrom
, vol.36
, pp. 782-790
-
-
Steen, H.1
Kuster, B.2
Mann, M.3
-
79
-
-
14744299376
-
The role of electron capture dissociation in biomolecular analysis
-
Cooper, H.J.; Håkansson, K.; Marshall, A.G. The role of electron capture dissociation in biomolecular analysis. Mass Spectrom. Rev. 2005, 24, 201-222.
-
(2005)
Mass Spectrom. Rev
, vol.24
, pp. 201-222
-
-
Cooper, H.J.1
Håkansson, K.2
Marshall, A.G.3
-
80
-
-
36349016738
-
On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications
-
Wu, S.L.; Hühmer, A.F.; Hao, Z.; Karger, B.L. On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications. J. Proteome Res. 2007, 6, 4230-4244.
-
(2007)
J. Proteome Res
, vol.6
, pp. 4230-4244
-
-
Wu, S.L.1
Hühmer, A.F.2
Hao, Z.3
Karger, B.L.4
-
81
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning, G.; Whyte, D.B.; Martinez, R.; Hunter, T.; Sudarsanam, S. The protein kinase complement of the human genome. Science 2002, 298, 1912-1934.
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
82
-
-
4344574540
-
Large-scale characterization of HeLa cell nuclear phosphoproteins
-
Beausoleil, S.A.; Jedrychowski, M.; Schwartz, D.; Elias, J.E.; Villén, J.; Li, J.; Cohn, M.A.; Cantley, L.C.; Gygi, S.P. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc. Natl. Acad. Sci. USA 2004, 101, 12130-12135.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12130-12135
-
-
Beausoleil, S.A.1
Jedrychowski, M.2
Schwartz, D.3
Elias, J.E.4
Villén, J.5
Li, J.6
Cohn, M.A.7
Cantley, L.C.8
Gygi, S.P.9
-
83
-
-
0023804303
-
Contribution of mass-spectrometry to peptide and protein-structure
-
Biemann, K. Contribution of mass-spectrometry to peptide and protein-structure. Biomed. Environ. Mass Spectrom. 1988, 16, 99-111.
-
(1988)
Biomed. Environ. Mass Spectrom
, vol.16
, pp. 99-111
-
-
Biemann, K.1
-
84
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
doi:10.1002/bms.1200111109
-
Roepstorff, P.; Fohlman, J. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed. Mass Spectrom. 1984, 11, doi:10.1002/bms.1200111109.
-
(1984)
Biomed. Mass Spectrom
, vol.11
-
-
Roepstorff, P.1
Fohlman, J.2
-
85
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S.E.; Mann, M. Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 2005, 1, 252-262.
-
(2005)
Nat. Chem. Biol
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
86
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S.E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D.B.; Steen, H.; Pandey, A.; Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
87
-
-
44049098715
-
Stable isotope labeling by amino acids in cell culture (SILAC)
-
Gruhler, S.; Kratchmarova, I. Stable isotope labeling by amino acids in cell culture (SILAC). Methods Mol. Biol. 2008, 424, 101-111.
-
(2008)
Methods Mol. Biol
, vol.424
, pp. 101-111
-
-
Gruhler, S.1
Kratchmarova, I.2
-
88
-
-
14144254701
-
Quantitative phosphorylation profiling of the ERK/p90 ribosomal S6 kinase-signaling cassette and its targets, the tuberous sclerosis tumor suppressors
-
Ballif, B.A.; Roux, P.P.; Gerber, S.A.; MacKeigan, J.P.; Blenis, J.; Gygi, S.P. Quantitative phosphorylation profiling of the ERK/p90 ribosomal S6 kinase-signaling cassette and its targets, the tuberous sclerosis tumor suppressors. Proc. Natl. Acad. Sci. USA 2005, 102, 667-672.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 667-672
-
-
Ballif, B.A.1
Roux, P.P.2
Gerber, S.A.3
Mackeigan, J.P.4
Blenis, J.5
Gygi, S.P.6
-
89
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P.L.; Huang, Y.N.; Marchese, J.N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 2004, 3, 1154-1169.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
-
90
-
-
33645509355
-
Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: Application to proteins isolated by gel electrophoresis
-
Sachon, E.; Mohammed, S.; Bache, N.; Jensen, O.N. Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: Application to proteins isolated by gel electrophoresis. Rapid Commun. Mass Spectrom. 2006, 20, 1127-1134.
-
(2006)
Rapid Commun. Mass Spectrom
, vol.20
, pp. 1127-1134
-
-
Sachon, E.1
Mohammed, S.2
Bache, N.3
Jensen, O.N.4
-
91
-
-
2542559631
-
Mechanistic studies on protein tyrosine phosphatases
-
Zhang, Z.Y. Mechanistic studies on protein tyrosine phosphatases. Prog. Nucleic Acid Res. Mol. Biol. 2003, 73, 171-220.
-
(2003)
Prog. Nucleic Acid Res. Mol. Biol
, vol.73
, pp. 171-220
-
-
Zhang, Z.Y.1
-
92
-
-
37249066605
-
Uncovering therapeutic targets for glioblastoma: A systems biology approach
-
Huang, P.H.; Cavenee, W.K.; Furnari, F.B.; White, F.M. Uncovering therapeutic targets for glioblastoma: A systems biology approach. Cell Cycle 2007, 6, 2750-2754.
-
(2007)
Cell Cycle
, vol.6
, pp. 2750-2754
-
-
Huang, P.H.1
Cavenee, W.K.2
Furnari, F.B.3
White, F.M.4
-
93
-
-
13444260275
-
The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick, D.S.; Gerber, S.A.; Gygi, S.P. The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications. Methods 2005, 35, 265-273.
-
(2005)
Methods
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
94
-
-
33646564676
-
Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes
-
Wang, G.; Wu, W.W.; Zeng, W.; Chou, C.L.; Shen, R.F. Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes. J. Proteome Res. 2006, 5, 1214-1223.
-
(2006)
J. Proteome Res
, vol.5
, pp. 1214-1223
-
-
Wang, G.1
Wu, W.W.2
Zeng, W.3
Chou, C.L.4
Shen, R.F.5
-
95
-
-
11144326201
-
Use of phosphoproteomics to study tyrosine kinase activity in capacitating boar sperm. Kinase activity and capacitation
-
Bailey, J.L.; Tardif, S.; Dubé, C.; Beaulieu, M.; Reyes-Moreno, C.; Lefièvre, L.; Leclerc, P. Use of phosphoproteomics to study tyrosine kinase activity in capacitating boar sperm. Kinase activity and capacitation. Theriogenology 2005, 63, 599-614.
-
(2005)
Theriogenology
, vol.63
, pp. 599-614
-
-
Bailey, J.L.1
Tardif, S.2
Dubé, C.3
Beaulieu, M.4
Reyes-Moreno, C.5
Lefièvre, L.6
Leclerc, P.7
-
96
-
-
84856675258
-
Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. Application to the insulin signaling pathway in Drosophila melanogaster S2 cells
-
Bridon, G.; Bonneil, E.; Muratore-Schroeder, T.; Caron-Lizotte, O.; Thibault, P. Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation. Application to the insulin signaling pathway in Drosophila melanogaster S2 cells. J. Proteome Res. 2012, 11, 927-940.
-
(2012)
J. Proteome Res
, vol.11
, pp. 927-940
-
-
Bridon, G.1
Bonneil, E.2
Muratore-Schroeder, T.3
Caron-Lizotte, O.4
Thibault, P.5
-
97
-
-
80054711609
-
Microscale phosphoproteome analysis of 10000 cells from human cancer cell lines
-
Masuda, T.; Sugiyama, N.; Tomita, M.; Ishihama, Y. Microscale phosphoproteome analysis of 10000 cells from human cancer cell lines. Anal. Chem. 2011, 83, 7698-7703.
-
(2011)
Anal. Chem
, vol.83
, pp. 7698-7703
-
-
Masuda, T.1
Sugiyama, N.2
Tomita, M.3
Ishihama, Y.4
-
98
-
-
84867166590
-
Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells
-
doi:10.1074/mcp.M112.020875
-
Sudhir, P.R.; Chen, C.H.; Kumari, M.P.; Wang, M.J.; Tsou, C.C.; Sung, T.Y.; Chen, J.Y.; Chen, C.H. Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells. Mol. Cell. Proteomics 2012, doi:10.1074/mcp.M112.020875.
-
(2012)
Mol. Cell. Proteomics
-
-
Sudhir, P.R.1
Chen, C.H.2
Kumari, M.P.3
Wang, M.J.4
Tsou, C.C.5
Sung, T.Y.6
Chen, J.Y.7
Chen, C.H.8
-
99
-
-
79960350722
-
Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches
-
Gámez-Pozo, A.; Sánchez-Navarro, I.; Calvo, E.; Díaz, E.; Miguel-Martín, M.; López, R.; Agulló, T.; Camafeita, E.; Espinosa, E.; López, J.A.; et al. Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches. Mol. Biosyst. 2011, 7, 2368-2374.
-
(2011)
Mol. Biosyst
, vol.7
, pp. 2368-2374
-
-
Gámez-Pozo, A.1
Sánchez-Navarro, I.2
Calvo, E.3
Díaz, E.4
Miguel-Martín, M.5
López, R.6
Agulló, T.7
Camafeita, E.8
Espinosa, E.9
López, J.A.10
-
100
-
-
84934437581
-
Reverse phase protein microarrays for clinical applications
-
Pierobon, M.; Belluco, C.; Liotta, L.A.; Petricoin, E.F., III. Reverse phase protein microarrays for clinical applications. Methods Mol. Biol. 2011, 785, 3-12.
-
(2011)
Methods Mol. Biol
, vol.785
, pp. 3-12
-
-
Pierobon, M.1
Belluco, C.2
Liotta, L.A.3
Petricoin III, E.F.4
-
101
-
-
79959733666
-
ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses
-
Courcelles, M.; Lemieux, S.; Voisin, L.; Meloche, S.; Thibault, P. ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses. Proteomics 2011, 11, 2654-2671.
-
(2011)
Proteomics
, vol.11
, pp. 2654-2671
-
-
Courcelles, M.1
Lemieux, S.2
Voisin, L.3
Meloche, S.4
Thibault, P.5
-
102
-
-
80052917740
-
Quantitative phosphoproteomics of CXCL12 (SDF-1) signaling
-
Wojcechowskyj, J.A.; Lee, J.Y.; Seeholzer, S.H.; Doms, R.W. Quantitative phosphoproteomics of CXCL12 (SDF-1) signaling. PLoS One 2011, 6, e24918.
-
(2011)
PLoS One
, vol.6
-
-
Wojcechowskyj, J.A.1
Lee, J.Y.2
Seeholzer, S.H.3
Doms, R.W.4
-
103
-
-
72449196261
-
Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
-
Pan, C.; Olsen, J.V.; Daub, H.; Mann, M. Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Mol. Cell. Proteomics 2009, 8, 2796-2808.
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2796-2808
-
-
Pan, C.1
Olsen, J.V.2
Daub, H.3
Mann, M.4
-
104
-
-
77949848665
-
A chemical and phosphoproteomic characterization of dasatinib action in lung cancer
-
Li, J.; Rix, U.; Fang, B.; Bai, Y.; Edwards, A.; Colinge, J.; Bennett, K.L.; Gao, J.; Song, L.; Eschrich, S.; et al. A chemical and phosphoproteomic characterization of dasatinib action in lung cancer. Nat. Chem. Biol. 2010, 6, 291-299.
-
(2010)
Nat. Chem. Biol
, vol.6
, pp. 291-299
-
-
Li, J.1
Rix, U.2
Fang, B.3
Bai, Y.4
Edwards, A.5
Colinge, J.6
Bennett, K.L.7
Gao, J.8
Song, L.9
Eschrich, S.10
-
105
-
-
80051733060
-
One-step preservation of phosphoproteins and tissue morphology at room temperature for diagnostic and research specimens
-
Mueller, C.; Edmiston, K.H.; Carpenter, C.; Gaffney, E.; Ryan, C.; Ward, R.; White, S.; Memeo, L.; Colarossi, C.; Petricoin, E.F. III; et al. One-step preservation of phosphoproteins and tissue morphology at room temperature for diagnostic and research specimens. PLoS One 2011, 6, e23780.
-
(2011)
PLoS One
, vol.6
-
-
Mueller, C.1
Edmiston, K.H.2
Carpenter, C.3
Gaffney, E.4
Ryan, C.5
Ward, R.6
White, S.7
Memeo, L.8
Colarossi, C.9
Petricoin III, E.F.10
-
106
-
-
84858028202
-
Phosphoproteomic studies of receptor tyrosine kinases: Future perspectives
-
Huang, P.H. Phosphoproteomic studies of receptor tyrosine kinases: Future perspectives. Mol. Biosyst. 2012, 8, 1100-1107.
-
(2012)
Mol. Biosyst
, vol.8
, pp. 1100-1107
-
-
Huang, P.H.1
-
107
-
-
84858844311
-
PTRF/cavin-1 and MIF proteins are identified as NSCLC biomarkers by label-free proteomics
-
Gámez-Pozo, A.; Sánchez-Navarro, I.; Calvo, E.; Agulló-Ortuño, M.T.; López-Vacas, R.; Díaz, E.; Camafeita, E.; Nistal, M.; Madero, R.; Espinosa, E.; et al. PTRF/cavin-1 and MIF proteins are identified as NSCLC biomarkers by label-free proteomics. PLoS One 2012, 7, e33752.
-
(2012)
PLoS One
, vol.7
-
-
Gámez-Pozo, A.1
Sánchez-Navarro, I.2
Calvo, E.3
Agulló-Ortuño, M.T.4
López-Vacas, R.5
Díaz, E.6
Camafeita, E.7
Nistal, M.8
Madero, R.9
Espinosa, E.10
-
108
-
-
78650494605
-
Proteomic profiling identifies pathways dysregulated in non-small cell lung cancer and an inverse association of AMPK and adhesion pathways with recurrence
-
Nanjundan, M.; Byers, L.A.; Carey, M.S.; Siwak, D.R.; Raso, M.G.; Diao, L.; Wang, J.; Coombes, K.R.; Roth, J.A.; Mills, G.B.; et al. Proteomic profiling identifies pathways dysregulated in non-small cell lung cancer and an inverse association of AMPK and adhesion pathways with recurrence. J. Thorac. Oncol. 2010, 5, 1894-1904.
-
(2010)
J. Thorac. Oncol
, vol.5
, pp. 1894-1904
-
-
Nanjundan, M.1
Byers, L.A.2
Carey, M.S.3
Siwak, D.R.4
Raso, M.G.5
Diao, L.6
Wang, J.7
Coombes, K.R.8
Roth, J.A.9
Mills, G.B.10
-
109
-
-
84864835466
-
The oncogenic lung cancer fusion kinase CD74-ROS activates a novel invasiveness pathway through E-Syt1 phosphorylation
-
Jun, H.J.; Johnson, H.; Bronson, R.T.; de Feraudy, S.; White, F.; Charest, A. The oncogenic lung cancer fusion kinase CD74-ROS activates a novel invasiveness pathway through E-Syt1 phosphorylation. Cancer Res. 2012, 72, 3764-3774.
-
(2012)
Cancer Res
, vol.72
, pp. 3764-3774
-
-
Jun, H.J.1
Johnson, H.2
Bronson, R.T.3
de Feraudy, S.4
White, F.5
Charest, A.6
-
110
-
-
79959249562
-
Expression of phosphorylated raf kinase inhibitor protein (pRKIP) is a predictor of lung cancer survival
-
Huerta-Yepez, S.; Yoon, N.K.; Hernandez-Cueto, A.; Mah, V.; Rivera-Pazos, C.M.; Chatterjee, D.; Vega, M.I.; Maresh, E.L.; Horvath, S.; Chia, D.; et al. Expression of phosphorylated raf kinase inhibitor protein (pRKIP) is a predictor of lung cancer survival. BMC Cancer 2011, 11, 259.
-
(2011)
BMC Cancer
, vol.11
, pp. 259
-
-
Huerta-Yepez, S.1
Yoon, N.K.2
Hernandez-Cueto, A.3
Mah, V.4
Rivera-Pazos, C.M.5
Chatterjee, D.6
Vega, M.I.7
Maresh, E.L.8
Horvath, S.9
Chia, D.10
-
111
-
-
70449677606
-
Omics Approaches in Cancer Research
-
Cho, W.C., Ed.; Springer: Heidelberg, Germany
-
Cho, W.C. Omics Approaches in Cancer Research. In An Omics Perspective on Cancer Research; Cho, W.C., Ed.; Springer: Heidelberg, Germany, 2010; pp. 1-9.
-
(2010)
An Omics Perspective On Cancer Research
, pp. 1-9
-
-
Cho, W.C.1
-
112
-
-
78349310118
-
Phosphoproteomics in cancer
-
Harsha, H.C.; Pandey, A. Phosphoproteomics in cancer. Mol. Oncol. 2010, 4, 482-495.
-
(2010)
Mol. Oncol
, vol.4
, pp. 482-495
-
-
Harsha, H.C.1
Pandey, A.2
-
113
-
-
78149454885
-
Subcellular phosphoproteomics
-
Trost, M.; Bridon, G.; Desjardins, M.; Thibault, P. Subcellular phosphoproteomics. Mass Spectrom. Rev. 2010, 29, 962-990.
-
(2010)
Mass Spectrom. Rev
, vol.29
, pp. 962-990
-
-
Trost, M.1
Bridon, G.2
Desjardins, M.3
Thibault, P.4
-
114
-
-
77956411032
-
Quantitative phosphoproteomics: New technologies and applications in the DNA damage response
-
Zhou, H.; Albuquerque, C.P.; Liang, J.; Suhandynata, R.T.; Weng, S. Quantitative phosphoproteomics: New technologies and applications in the DNA damage response. Cell Cycle 2010, 9, 3479-3484.
-
(2010)
Cell Cycle
, vol.9
, pp. 3479-3484
-
-
Zhou, H.1
Albuquerque, C.P.2
Liang, J.3
Suhandynata, R.T.4
Weng, S.5
-
115
-
-
79952201227
-
Analysis of phosphoproteomics data
-
Schaab, C. Analysis of phosphoproteomics data. Methods Mol. Biol. 2011, 696, 41-57.
-
(2011)
Methods Mol. Biol
, vol.696
, pp. 41-57
-
-
Schaab, C.1
-
116
-
-
84871921496
-
Relevant phosphoproteomic and mass spectrometry: Approaches useful in clinical research
-
doi:10.1186/2001-1326-1-2
-
López, E.; Muñoz, S.; Pascual, J.; Madero, L. Relevant phosphoproteomic and mass spectrometry: Approaches useful in clinical research. Clin. Transl. Med. 2012, doi:10.1186/2001-1326-1-2.
-
(2012)
Clin. Transl. Med
-
-
López, E.1
Muñoz, S.2
Pascual, J.3
Madero, L.4
-
117
-
-
84861468039
-
Clinical proteomics and OMICS clues useful in translational medicine research
-
doi:10.1186/1477-5956-10-35
-
Lopez, E.; Madero, L.; Lopez-Pascual, J.; Latterich, M. Clinical proteomics and OMICS clues useful in translational medicine research. Proteome Sci. 2012, 10, doi:10.1186/1477-5956-10-35.
-
(2012)
Proteome Sci
, vol.10
-
-
Lopez, E.1
Madero, L.2
Lopez-Pascual, J.3
Latterich, M.4
-
118
-
-
34249980306
-
Oncoproteomics: Current trends and future perspectives
-
Cho, W.C.; Cheng, C.H. Oncoproteomics: Current trends and future perspectives. Expert Rev. Proteomics 2007, 4, 401-410.
-
(2007)
Expert Rev. Proteomics
, vol.4
, pp. 401-410
-
-
Cho, W.C.1
Cheng, C.H.2
|