-
1
-
-
0023496815
-
Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics
-
Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, et al. (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics 18: 489-522.
-
(1987)
Annual Review of Ecology and Systematics
, vol.18
, pp. 489-522
-
-
Avise, J.C.1
Arnold, J.2
Ball, R.M.3
Bermingham, E.4
Lamb, T.5
-
2
-
-
0000621581
-
Genetic evidence for a Pleistocene population explosion
-
Rogers AR, (1995) Genetic evidence for a Pleistocene population explosion. Evolution 49: 608-615.
-
(1995)
Evolution
, vol.49
, pp. 608-615
-
-
Rogers, A.R.1
-
3
-
-
0000635613
-
Mitochondrial DNA and two perspectives on evolutionary genetics
-
Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, et al. (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnaean Society 26: 375-400.
-
(1985)
Biological Journal of the Linnaean Society
, vol.26
, pp. 375-400
-
-
Wilson, A.C.1
Cann, R.L.2
Carr, S.M.3
George, M.4
Gyllensten, U.B.5
-
4
-
-
0002447606
-
Mitochondrial control region sequences as tools for understanding evolution
-
In: Mindell DP, editor,San Diego, CA: Academic Press
-
Baker AJ, Marshall HD (1997) Mitochondrial control region sequences as tools for understanding evolution. In: Mindell DP, editor. Avian Molecular Evolution and Systematics. San Diego, CA: Academic Press. pp. 51-82.
-
(1997)
Avian Molecular Evolution and Systematics
, pp. 51-82
-
-
Baker, A.J.1
Marshall, H.D.2
-
6
-
-
0026046333
-
African populations and the evolution of human mitochondrial DNA
-
Vigilant L, Stoneking M, Harpending H, Hawkes K, Wilson AC, (1991) African populations and the evolution of human mitochondrial DNA. Science 253: 1503-1507.
-
(1991)
Science
, vol.253
, pp. 1503-1507
-
-
Vigilant, L.1
Stoneking, M.2
Harpending, H.3
Hawkes, K.4
Wilson, A.C.5
-
7
-
-
1642566711
-
Mitochondrial DNA variation, effective female population size and population history of the endangered Chinese sturgeon, Acipenser sinensis
-
Zhang SM, Wang DQ, Zhang YP, (2003) Mitochondrial DNA variation, effective female population size and population history of the endangered Chinese sturgeon, Acipenser sinensis. Conservation Genetics 4: 673-683.
-
(2003)
Conservation Genetics
, vol.4
, pp. 673-683
-
-
Zhang, S.M.1
Wang, D.Q.2
Zhang, Y.P.3
-
8
-
-
0034532275
-
Heteroplasmy in the mtDNA control region of sturgeon (Acipenser, Huso and Scaphirhynchus)
-
Ludwig A, May B, Debus L, Jenneckens I, (2000) Heteroplasmy in the mtDNA control region of sturgeon (Acipenser, Huso and Scaphirhynchus). Genetics 156: 1933-1947.
-
(2000)
Genetics
, vol.156
, pp. 1933-1947
-
-
Ludwig, A.1
May, B.2
Debus, L.3
Jenneckens, I.4
-
9
-
-
67349134670
-
Investigation of Heteroplasmy in the Human Mitochondrial DNA Control Region: A Synthesis of Observations from More Than 5000 Global Population Samples
-
Irwin JA, Saunier JL, Niederstatter H, Strouss KM, Sturk KA, et al. (2009) Investigation of Heteroplasmy in the Human Mitochondrial DNA Control Region: A Synthesis of Observations from More Than 5000 Global Population Samples. Journal of Molecular Evolution 68: 516-527.
-
(2009)
Journal of Molecular Evolution
, vol.68
, pp. 516-527
-
-
Irwin, J.A.1
Saunier, J.L.2
Niederstatter, H.3
Strouss, K.M.4
Sturk, K.A.5
-
11
-
-
0029909927
-
Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA-gene cluster
-
Kumazawa Y, Ota H, Nishida M, Ozawa T, (1996) Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA-gene cluster. Molecular Biology and Evolution 13: 1242-1254.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 1242-1254
-
-
Kumazawa, Y.1
Ota, H.2
Nishida, M.3
Ozawa, T.4
-
12
-
-
33845873317
-
Mitochondrial genomes and avian phylogeny: Complex characters and resolvability without explosive radiations
-
Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D, (2007) Mitochondrial genomes and avian phylogeny: Complex characters and resolvability without explosive radiations. Molecular Biology and Evolution 24: 269-280.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 269-280
-
-
Gibb, G.C.1
Kardailsky, O.2
Kimball, R.T.3
Braun, E.L.4
Penny, D.5
-
13
-
-
14544298002
-
Evolution of duplicate control regions in the mitochondrial genomes of metazoa: A case study with Australasian Ixodes ticks
-
Shao RF, Barker SC, Mitani H, Aoki Y, Fukunaga M, (2005) Evolution of duplicate control regions in the mitochondrial genomes of metazoa: A case study with Australasian Ixodes ticks. Molecular Biology and Evolution 22: 620-629.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 620-629
-
-
Shao, R.F.1
Barker, S.C.2
Mitani, H.3
Aoki, Y.4
Fukunaga, M.5
-
15
-
-
39749186003
-
Bird mitochondrial gene order: Insight from 3 warbler mitochondrial genomes
-
Singh TR, Shneor O, Huchon D, (2008) Bird mitochondrial gene order: Insight from 3 warbler mitochondrial genomes. Molecular Biology and Evolution 25: 475-477.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 475-477
-
-
Singh, T.R.1
Shneor, O.2
Huchon, D.3
-
16
-
-
0034939490
-
Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona
-
Eberhard JR, Wright TF, Bermingham E, (2001) Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Molecular Biology and Evolution 18: 1330-1342.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 1330-1342
-
-
Eberhard, J.R.1
Wright, T.F.2
Bermingham, E.3
-
17
-
-
33644874509
-
An unusual source of apparent mitochondrial heteroplasmy: duplicate mitochondrial control regions in Thalassarche albatrosses
-
Abbott CL, Double MC, Trueman JWH, Robinson A, Cockburn A, (2005) An unusual source of apparent mitochondrial heteroplasmy: duplicate mitochondrial control regions in Thalassarche albatrosses. Molecular Ecology 14: 3605-3613.
-
(2005)
Molecular Ecology
, vol.14
, pp. 3605-3613
-
-
Abbott, C.L.1
Double, M.C.2
Trueman, J.W.H.3
Robinson, A.4
Cockburn, A.5
-
19
-
-
0041695640
-
Speciation in North American black basses, Micropterus (Actinopterygii: Centrarchidae)
-
Near TJ, Kassler TW, Koppelman JB, Dillman CB, Philipp DP, (2003) Speciation in North American black basses, Micropterus (Actinopterygii: Centrarchidae). Evolution 57: 1610-1621.
-
(2003)
Evolution
, vol.57
, pp. 1610-1621
-
-
Near, T.J.1
Kassler, T.W.2
Koppelman, J.B.3
Dillman, C.B.4
Philipp, D.P.5
-
20
-
-
36549076445
-
Amphibian DNA shows marked genetic structure and tracks Pleistocene climate change in northeastern Brazil
-
Carnaval AC, Bates JM, (2007) Amphibian DNA shows marked genetic structure and tracks Pleistocene climate change in northeastern Brazil. Evolution 61: 2942-2957.
-
(2007)
Evolution
, vol.61
, pp. 2942-2957
-
-
Carnaval, A.C.1
Bates, J.M.2
-
21
-
-
34548525154
-
Ancient differentiation in the single-island avian radiation of endemic Hispaniolan chat-tanagers (Aves: Calyptophilus)
-
Townsend AK, Rimmer CC, Latta SC, Lovette IJ, (2007) Ancient differentiation in the single-island avian radiation of endemic Hispaniolan chat-tanagers (Aves: Calyptophilus). Molecular Ecology 16: 3634-3642.
-
(2007)
Molecular Ecology
, vol.16
, pp. 3634-3642
-
-
Townsend, A.K.1
Rimmer, C.C.2
Latta, S.C.3
Lovette, I.J.4
-
22
-
-
58249116647
-
Phylogeography of the greater horseshoe bat, Rhinolophus ferrumequinum: contrasting results from mitochondrial and microsatellite data
-
Flanders J, Jones G, Benda P, Dietz C, Zhang SY, et al. (2009) Phylogeography of the greater horseshoe bat, Rhinolophus ferrumequinum: contrasting results from mitochondrial and microsatellite data. Molecular Ecology 18: 306-318.
-
(2009)
Molecular Ecology
, vol.18
, pp. 306-318
-
-
Flanders, J.1
Jones, G.2
Benda, P.3
Dietz, C.4
Zhang, S.Y.5
-
23
-
-
23744507900
-
Evolutionary history, population genetis, and gene flow in the common rosefinch (Carpodacus erythrinus)
-
Pavlova A, Zink RM, Rohwer S, (2005) Evolutionary history, population genetis, and gene flow in the common rosefinch (Carpodacus erythrinus). Molecular Phylogenetics and Evolution 36: 669-681.
-
(2005)
Molecular Phylogenetics and Evolution
, vol.36
, pp. 669-681
-
-
Pavlova, A.1
Zink, R.M.2
Rohwer, S.3
-
24
-
-
59849116001
-
Comparing Evolutionary Patterns and Variability in the Mitochondrial Control Region and Cytochrome b in Three Species of Baleen Whales
-
Alter SE, Palumbi SR, (2009) Comparing Evolutionary Patterns and Variability in the Mitochondrial Control Region and Cytochrome b in Three Species of Baleen Whales. Journal of Molecular Evolution 68: 97-111.
-
(2009)
Journal of Molecular Evolution
, vol.68
, pp. 97-111
-
-
Alter, S.E.1
Palumbi, S.R.2
-
25
-
-
77954547173
-
Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes
-
Rutledge LY, Patterson BR, White BN, (2010) Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes. BMC Evolutionary Biology 10.
-
(2010)
BMC Evolutionary Biology
, vol.10
-
-
Rutledge, L.Y.1
Patterson, B.R.2
White, B.N.3
-
26
-
-
0028279173
-
Nonneutral evolution at the mitochondrial NADH dehydrogenase 3 gene in mice
-
Nachman MW, Boyer SN, Aquadro CF, (1994) Nonneutral evolution at the mitochondrial NADH dehydrogenase 3 gene in mice'. Proceedings of the National Academy of Sciences, USA 91: 6364-6368.
-
(1994)
Proceedings of the National Academy of Sciences, USA
, vol.91
, pp. 6364-6368
-
-
Nachman, M.W.1
Boyer, S.N.2
Aquadro, C.F.3
-
27
-
-
17044410142
-
Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies
-
Zink RM, (2005) Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies. Proceedings of the Royal Society of London, Series B 272: 71-78.
-
(2005)
Proceedings of the Royal Society of London, Series B
, vol.272
, pp. 71-78
-
-
Zink, R.M.1
-
28
-
-
1642286464
-
The effect of selection on genealogies
-
Barton NH, Etheridge AM, (2004) The effect of selection on genealogies. Genetics 166: 1115-1131.
-
(2004)
Genetics
, vol.166
, pp. 1115-1131
-
-
Barton, N.H.1
Etheridge, A.M.2
-
29
-
-
33746774640
-
Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea
-
Zink RM, Drovetski SV, Rohwer S, (2006) Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea. Molecular Phylogenetics and Evolution 40: 679-686.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 679-686
-
-
Zink, R.M.1
Drovetski, S.V.2
Rohwer, S.3
-
30
-
-
34047166418
-
Phylogeography of the white-breasted nuthatch (Sitta carolinensis): diversification in North American pine and oak woodlands
-
Spellman GM, Klicka J, (2007) Phylogeography of the white-breasted nuthatch (Sitta carolinensis): diversification in North American pine and oak woodlands. Molecular Ecology 16: 1729-1740.
-
(2007)
Molecular Ecology
, vol.16
, pp. 1729-1740
-
-
Spellman, G.M.1
Klicka, J.2
-
31
-
-
33947653226
-
Lack of phylogeographic structure in three widespread Australian birds reinforces emerging challenges in Australian historical biogeography
-
Joseph L, Wilke T, (2007) Lack of phylogeographic structure in three widespread Australian birds reinforces emerging challenges in Australian historical biogeography. Journal of Biogeography 34: 612-624.
-
(2007)
Journal of Biogeography
, vol.34
, pp. 612-624
-
-
Joseph, L.1
Wilke, T.2
-
32
-
-
0020670470
-
Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals
-
Aquadro CF, Greenberg BD, (1983) Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals. Genetics 103: 287-312.
-
(1983)
Genetics
, vol.103
, pp. 287-312
-
-
Aquadro, C.F.1
Greenberg, B.D.2
-
33
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K, Nei M, (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
-
(1993)
Molecular Biology and Evolution
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
34
-
-
0027496790
-
Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA
-
Wakely J, (1993) Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. Journal of Molecular Evolution 37: 613-623.
-
(1993)
Journal of Molecular Evolution
, vol.37
, pp. 613-623
-
-
Wakely, J.1
-
35
-
-
4944257680
-
African haplogroup L mtDNA sequences show violations of clock-like evolution
-
Howell N, Elson JL, Turnbull DM, Herrnstadt C, (2004) African haplogroup L mtDNA sequences show violations of clock-like evolution. Molecular Biology and Evolution 21: 1843-1854.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1843-1854
-
-
Howell, N.1
Elson, J.L.2
Turnbull, D.M.3
Herrnstadt, C.4
-
36
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
37
-
-
0030821992
-
Statistical tests of neutrality against population growth, hitchhiking and background selection
-
Fu Y-X, (1997) Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics 147: 915-925.
-
(1997)
Genetics
, vol.147
, pp. 915-925
-
-
Fu, Y.-X.1
-
38
-
-
0030056912
-
The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism
-
Aris-Brosou S, Excoffier L, (1996) The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Molecular Biology and Evolution 13: 494-504.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 494-504
-
-
Aris-Brosou, S.1
Excoffier, L.2
-
39
-
-
0029097280
-
The number of segregating sites in expanding human populations, with implications for estimates of demographic parameters
-
Bertorelle G, Slatkin M, (1995) The number of segregating sites in expanding human populations, with implications for estimates of demographic parameters. Molecular Biology and Evolution 12: 887-892.
-
(1995)
Molecular Biology and Evolution
, vol.12
, pp. 887-892
-
-
Bertorelle, G.1
Slatkin, M.2
-
40
-
-
0026020273
-
Time of the deepest root for polymorphism in human mitochondrial DNA
-
Hasegawa M, Horai S, (1991) Time of the deepest root for polymorphism in human mitochondrial DNA. Journal of Molecular Evolution 32: 37-42.
-
(1991)
Journal of Molecular Evolution
, vol.32
, pp. 37-42
-
-
Hasegawa, M.1
Horai, S.2
-
41
-
-
0038040657
-
Demographic expansion of parasitic nematodes of livestock based on mitochondrial DNA regions that conflict with the infinite-sites model
-
Mes THM, (2003) Demographic expansion of parasitic nematodes of livestock based on mitochondrial DNA regions that conflict with the infinite-sites model. Molecular Ecology 12: 1555-1566.
-
(2003)
Molecular Ecology
, vol.12
, pp. 1555-1566
-
-
Mes, T.H.M.1
-
42
-
-
0030735280
-
Estimation of the amount of DNA polymorphism when the neutral mutation rate varies among sites
-
Misawa K, Tajima F, (1997) Estimation of the amount of DNA polymorphism when the neutral mutation rate varies among sites. Genetics 147: 1959-1964.
-
(1997)
Genetics
, vol.147
, pp. 1959-1964
-
-
Misawa, K.1
Tajima, F.2
-
43
-
-
0032814604
-
Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: Application to human mitochondrial DNA
-
Schneider S, Excoffier L, (1999) Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: Application to human mitochondrial DNA. Genetics 152: 1079-1089.
-
(1999)
Genetics
, vol.152
, pp. 1079-1089
-
-
Schneider, S.1
Excoffier, L.2
-
44
-
-
74549151043
-
How Robust Are "Isolation with Migration" Analyses to Violations of the IM Model? A Simulation Study
-
Strasburg JL, Rieseberg LH, (2010) How Robust Are "Isolation with Migration" Analyses to Violations of the IM Model? A Simulation Study. Molecular Biology and Evolution 27: 297-310.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 297-310
-
-
Strasburg, J.L.1
Rieseberg, L.H.2
-
45
-
-
0029027992
-
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
-
Kuhner MK, Yamato J, Felsenstein J, (1995) Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140: 1421-1430.
-
(1995)
Genetics
, vol.140
, pp. 1421-1430
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
46
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
Kuhner MK, Yamato J, Felsenstein J, (1998) Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149: 429-434.
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
47
-
-
0030014298
-
The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites
-
Tajima F, (1996) The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics 143: 1457-1465.
-
(1996)
Genetics
, vol.143
, pp. 1457-1465
-
-
Tajima, F.1
-
48
-
-
0033762150
-
The effects of rate variation on ancestral inference in the coalescent
-
Markovtsova L, Marjoram P, Tavare S, (2000) The effects of rate variation on ancestral inference in the coalescent. Genetics 156: 1427-1436.
-
(2000)
Genetics
, vol.156
, pp. 1427-1436
-
-
Markovtsova, L.1
Marjoram, P.2
Tavare, S.3
-
49
-
-
0000627232
-
Phylogeographic population structure of red-winged blackbirds assessed by mitochondrial DNA
-
Ball RM Jr, Freeman S, James FC, Bermingham E, Avise JC, (1988) Phylogeographic population structure of red-winged blackbirds assessed by mitochondrial DNA. Proceedings Of The National Academy Of Sciences Of The United States Of America 85: 1558-1562.
-
(1988)
Proceedings Of The National Academy Of Sciences Of The United States Of America
, vol.85
, pp. 1558-1562
-
-
Ball Jr., R.M.1
Freeman, S.2
James, F.C.3
Bermingham, E.4
Avise, J.C.5
-
50
-
-
0000714131
-
Allozyme variation among breeding populations of red-winged blackbirds: the California conundrum
-
Gavin TA, Howard RA, May B, (1991) Allozyme variation among breeding populations of red-winged blackbirds: the California conundrum. The Auk 108: 602-611.
-
(1991)
The Auk
, vol.108
, pp. 602-611
-
-
Gavin, T.A.1
Howard, R.A.2
May, B.3
-
51
-
-
0032188812
-
Geographic analysis of nucleotide diversity and song sparrow (Aves: Emberizidae) population history
-
Fry AJ, Zink RM, (1998) Geographic analysis of nucleotide diversity and song sparrow (Aves: Emberizidae) population history. Molecular Ecology 7: 1303-1313.
-
(1998)
Molecular Ecology
, vol.7
, pp. 1303-1313
-
-
Fry, A.J.1
Zink, R.M.2
-
52
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein J, (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17: 368-376.
-
(1981)
Journal of Molecular Evolution
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
53
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Tajima F, (1993) Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135: 599-607.
-
(1993)
Genetics
, vol.135
, pp. 599-607
-
-
Tajima, F.1
-
54
-
-
0029348907
-
Primers for amplification and determination of mitochondrial control-region sequences in oscine passerines
-
Tarr CL, (1995) Primers for amplification and determination of mitochondrial control-region sequences in oscine passerines. Molecular Ecology 4: 527-529.
-
(1995)
Molecular Ecology
, vol.4
, pp. 527-529
-
-
Tarr, C.L.1
-
55
-
-
0030125185
-
Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves)
-
Hackett SJ, (1996) Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Molecular Phylogenetics and Evolution 5: 368-382.
-
(1996)
Molecular Phylogenetics and Evolution
, vol.5
, pp. 368-382
-
-
Hackett, S.J.1
-
56
-
-
1642269989
-
Mitochondrial phylogeny of Locustella and related genera
-
Drovetski SV, Zink RM, Fadeev IV, Nesterov EV, Koblik EA, et al. (2004) Mitochondrial phylogeny of Locustella and related genera. Journal of Avian Biology 35: 105-110.
-
(2004)
Journal of Avian Biology
, vol.35
, pp. 105-110
-
-
Drovetski, S.V.1
Zink, R.M.2
Fadeev, I.V.3
Nesterov, E.V.4
Koblik, E.A.5
-
57
-
-
60749129130
-
Assessment of species limits among yellow-breasted meadowlarks (Sturnella spp.) using mitochondrial and sex-linked markers
-
Barker FK, Vandergon AJ, Lanyon SM, (2008) Assessment of species limits among yellow-breasted meadowlarks (Sturnella spp.) using mitochondrial and sex-linked markers. Auk 125: 869-879.
-
(2008)
Auk
, vol.125
, pp. 869-879
-
-
Barker, F.K.1
Vandergon, A.J.2
Lanyon, S.M.3
-
60
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
61
-
-
4143101642
-
Molecular architecture and rates of DNA substitutions of the mitochondrial control region of cracid birds
-
Pereira SL, Grau ET, Wajntal A, (2004) Molecular architecture and rates of DNA substitutions of the mitochondrial control region of cracid birds. Genome 47: 535-545.
-
(2004)
Genome
, vol.47
, pp. 535-545
-
-
Pereira, S.L.1
Grau, E.T.2
Wajntal, A.3
-
62
-
-
0036019705
-
Structure and evolution of the avian mitochondrial control region
-
Ruokonen M, Kvist L, (2002) Structure and evolution of the avian mitochondrial control region. Molecular Phylogenetics and Evolution 23: 422-432.
-
(2002)
Molecular Phylogenetics and Evolution
, vol.23
, pp. 422-432
-
-
Ruokonen, M.1
Kvist, L.2
-
64
-
-
13444251528
-
RDP2: recombination detection and analysis from sequence alignments
-
Martin DP, Williamson C, Posada D, (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
65
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
67
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
68
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F, (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
69
-
-
1342309210
-
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
-
Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F, (2004) Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
-
(2004)
Bioinformatics
, vol.20
, pp. 407-415
-
-
Altekar, G.1
Dwarkadas, S.2
Huelsenbeck, J.P.3
Ronquist, F.4
-
70
-
-
0029120814
-
Mixed model analysis of DNA sequence evolution
-
Yang Z, Wang T, (1995) Mixed model analysis of DNA sequence evolution. Biometrics 51: 552-561.
-
(1995)
Biometrics
, vol.51
, pp. 552-561
-
-
Yang, Z.1
Wang, T.2
-
71
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z, (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Computer Applications in the Biosciences 13: 555-556.
-
(1997)
Computer Applications in the Biosciences
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
72
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sanchex-Del Barrio JC, Messegyur X, Rozas R, (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sanchex-Del Barrio, J.C.2
Messegyur, X.3
Rozas, R.4
-
73
-
-
0019346542
-
DNA polymorphism detectable by restriction endonucleases
-
Nei M, Tajima F, (1981) DNA polymorphism detectable by restriction endonucleases. Genetics 97: 145-163.
-
(1981)
Genetics
, vol.97
, pp. 145-163
-
-
Nei, M.1
Tajima, F.2
-
74
-
-
0014296201
-
Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles
-
Kimura M, (1968) Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles. Genetical Research 11: 247-269.
-
(1968)
Genetical Research
, vol.11
, pp. 247-269
-
-
Kimura, M.1
-
75
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson GA, (1975) On the number of segregating sites in genetical models without recombination. Theoretical Population Biology 7: 256-276.
-
(1975)
Theoretical Population Biology
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
76
-
-
85007110786
-
Arlequin, ver 3.0: An integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S, (2005) Arlequin, ver 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
-
(2005)
Evolutionary Bioinformatics Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
77
-
-
0032912338
-
Population dynamics of HIV-1 inferred from gene sequences
-
Grassly NC, Harvey PH, Holmes EC, (1999) Population dynamics of HIV-1 inferred from gene sequences. Genetics 151: 427-438.
-
(1999)
Genetics
, vol.151
, pp. 427-438
-
-
Grassly, N.C.1
Harvey, P.H.2
Holmes, E.C.3
-
78
-
-
33645108873
-
LAMARC 2.0: Maximum likelihood and Bayesian estimation of population parameters
-
Kuhner MK, (2006) LAMARC 2.0: Maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22: 768-770.
-
(2006)
Bioinformatics
, vol.22
, pp. 768-770
-
-
Kuhner, M.K.1
-
80
-
-
0022376704
-
Dating the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T-a, (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174.
-
(1985)
Journal of Molecular Evolution
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.-a.3
-
81
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave C, Preparata G, Saccone C, Serio G, (1984) A new method for calculating evolutionary substitution rates. Journal of Molecular Evolution 20: 86-93.
-
(1984)
Journal of Molecular Evolution
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
82
-
-
0032873056
-
Molecular systematics of the grackles and allies, and the effect of additional sequence (cyt b and ND2)
-
Johnson KP, Lanyon SM, (1999) Molecular systematics of the grackles and allies, and the effect of additional sequence (cyt b and ND2). Auk 116: 759-768.
-
(1999)
Auk
, vol.116
, pp. 759-768
-
-
Johnson, K.P.1
Lanyon, S.M.2
-
84
-
-
0021581577
-
Distance methods for inferring phylognies: a justification
-
Felsenstein J, (1984) Distance methods for inferring phylognies: a justification. Evolution 38: 16-24.
-
(1984)
Evolution
, vol.38
, pp. 16-24
-
-
Felsenstein, J.1
-
85
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
-
Yang ZH, (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular Evolution 39: 306-314.
-
(1994)
Journal of Molecular Evolution
, vol.39
, pp. 306-314
-
-
Yang, Z.H.1
-
86
-
-
70450136457
-
Tracer. 1.3 ed: Published by the authors
-
Rambaut A, Drummond A, (2004) Tracer. 1.3 ed: Published by the authors.
-
(2004)
-
-
Rambaut, A.1
Drummond, A.2
-
87
-
-
0033840788
-
Dynamics and phylogenetic implications of mtDNA control region sequences in New World jays (Aves: Corvidae)
-
Saunders MA, Edwards SV, (2000) Dynamics and phylogenetic implications of mtDNA control region sequences in New World jays (Aves: Corvidae). Journal of Molecular Evolution 51: 97-109.
-
(2000)
Journal of Molecular Evolution
, vol.51
, pp. 97-109
-
-
Saunders, M.A.1
Edwards, S.V.2
-
88
-
-
0031039450
-
Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris)
-
Marshall HD, Baker AJ, (1997) Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Molecular Biology and Evolution 14: 173-184.
-
(1997)
Molecular Biology and Evolution
, vol.14
, pp. 173-184
-
-
Marshall, H.D.1
Baker, A.J.2
-
89
-
-
0032779612
-
Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA
-
Meyer S, Weiss G, von Haeseler A, (1999) Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA. Genetics 152: 1103-1110.
-
(1999)
Genetics
, vol.152
, pp. 1103-1110
-
-
Meyer, S.1
Weiss, G.2
von Haeseler, A.3
-
90
-
-
0033635474
-
Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae)
-
Crochet P-A, Desmarais E, (2000) Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae). Molecular Biology and Evolution 17: 1797-1806.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 1797-1806
-
-
Crochet, P.-A.1
Desmarais, E.2
-
91
-
-
0034782682
-
Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes)
-
Randi E, Lucchini V, Hennache A, Kimball RT, Braun EL, et al. (2001) Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes). Molecular Phylogenetics and Evolution 19: 187-201.
-
(2001)
Molecular Phylogenetics and Evolution
, vol.19
, pp. 187-201
-
-
Randi, E.1
Lucchini, V.2
Hennache, A.3
Kimball, R.T.4
Braun, E.L.5
-
92
-
-
0032873641
-
Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees
-
Excoffier L, Yang ZH, (1999) Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees. Molecular Biology and Evolution 16: 1357-1368.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1357-1368
-
-
Excoffier, L.1
Yang, Z.H.2
-
93
-
-
32044448490
-
Mutation hot spots in mammalian mitochondrial DNA
-
Galtier N, Enard D, Radondy Y, Bazin E, Belkhir K, (2006) Mutation hot spots in mammalian mitochondrial DNA. Genome Research 16: 215-222.
-
(2006)
Genome Research
, vol.16
, pp. 215-222
-
-
Galtier, N.1
Enard, D.2
Radondy, Y.3
Bazin, E.4
Belkhir, K.5
-
94
-
-
0033804530
-
Hypervariable sites in the mtDNA control region are mutational hotspots
-
Stoneking M, (2000) Hypervariable sites in the mtDNA control region are mutational hotspots. American Journal of Human Genetics 67: 1029-1032.
-
(2000)
American Journal of Human Genetics
, vol.67
, pp. 1029-1032
-
-
Stoneking, M.1
-
95
-
-
0034496840
-
Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
-
Edwards SV, Beerli P, (2000) Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54: 1839-1854.
-
(2000)
Evolution
, vol.54
, pp. 1839-1854
-
-
Edwards, S.V.1
Beerli, P.2
-
96
-
-
0032875445
-
The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models
-
Sullivan J, Swofford DL, Naylor GJP, (1999) The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models. Molecular Biology and Evolution 16: 1347-1356.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1347-1356
-
-
Sullivan, J.1
Swofford, D.L.2
Naylor, G.J.P.3
-
98
-
-
1242310492
-
Mitochondrial dating and mixed support for the "2% rule" in birds
-
Lovette IJ, (2004) Mitochondrial dating and mixed support for the "2% rule" in birds. Auk 121: 1-6.
-
(2004)
Auk
, vol.121
, pp. 1-6
-
-
Lovette, I.J.1
-
99
-
-
43049101093
-
Calibrating the avian molecular clock
-
Weir JT, Schluter D, (2008) Calibrating the avian molecular clock. Molecular Ecology 17: 2321-2328.
-
(2008)
Molecular Ecology
, vol.17
, pp. 2321-2328
-
-
Weir, J.T.1
Schluter, D.2
-
100
-
-
0001991181
-
Red-winged blackbird
-
In: Newton I, editor, San Diego, CA: Academic Press
-
Orians GH, Beletsky LD (1989) Red-winged blackbird. In: Newton I, editor. Lifetime Reproduction in Birds. San Diego, CA: Academic Press. pp. 183-200.
-
(1989)
Lifetime Reproduction in Birds
, pp. 183-200
-
-
Orians, G.H.1
Beletsky, L.D.2
-
101
-
-
0023727379
-
Current versus historical population size in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations
-
Avise JC, Ball RM Jr, Arnold J, (1988) Current versus historical population size in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Molecular Biology and Evolution 5: 331-344.
-
(1988)
Molecular Biology and Evolution
, vol.5
, pp. 331-344
-
-
Avise, J.C.1
Ball Jr., R.M.2
Arnold, J.3
-
102
-
-
0027329717
-
The influence of mating system and overlapping generations on effective population size
-
Nunney L, (1993) The influence of mating system and overlapping generations on effective population size. Evolution 47: 1329-1341.
-
(1993)
Evolution
, vol.47
, pp. 1329-1341
-
-
Nunney, L.1
-
105
-
-
18644368206
-
Tricolored blackbird (Agelaius tricolor)
-
Beedy EC, (1999) Tricolored blackbird (Agelaius tricolor). The Birds of North America 423: 1-24.
-
(1999)
The Birds of North America
, vol.423
, pp. 1-24
-
-
Beedy, E.C.1
-
111
-
-
0029099781
-
Properties of statistical tests of neutrality for DNA polymorphism data
-
Simonsen KL, Churchill GA, Aquadro CF, (1995) Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
-
(1995)
Genetics
, vol.141
, pp. 413-429
-
-
Simonsen, K.L.1
Churchill, G.A.2
Aquadro, C.F.3
-
112
-
-
0029860602
-
Some genetic consequences of ice ages, and their role in divergence and speciation
-
Hewitt GM, (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnaean Society 58: 247-276.
-
(1996)
Biological Journal of the Linnaean Society
, vol.58
, pp. 247-276
-
-
Hewitt, G.M.1
-
113
-
-
0037422550
-
Natural selection shaped regional mtDNA variation in humans
-
Mishmar D, Ruiz-Pesini E, Golik P, Macaulay V, Clark AG, et al. (2003) Natural selection shaped regional mtDNA variation in humans. Proceedings of the National Academy of Sciences of the United States of America 100: 171-176.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 171-176
-
-
Mishmar, D.1
Ruiz-Pesini, E.2
Golik, P.3
Macaulay, V.4
Clark, A.G.5
-
114
-
-
0347356538
-
Effects of purifying and adaptive selection on regional variation in human mtDNA
-
Ruiz-Pesini E, Mishmar D, Brandon M, Procaccio V, Wallace DC, (2004) Effects of purifying and adaptive selection on regional variation in human mtDNA. Science 303: 223-226.
-
(2004)
Science
, vol.303
, pp. 223-226
-
-
Ruiz-Pesini, E.1
Mishmar, D.2
Brandon, M.3
Procaccio, V.4
Wallace, D.C.5
-
115
-
-
33244457956
-
The role of selection in the evolution of human mitochondrial genomes
-
Kivisild T, Shen PD, Wall DP, Do B, Sung R, et al. (2006) The role of selection in the evolution of human mitochondrial genomes. Genetics 172: 373-387.
-
(2006)
Genetics
, vol.172
, pp. 373-387
-
-
Kivisild, T.1
Shen, P.D.2
Wall, D.P.3
Do, B.4
Sung, R.5
-
116
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson RR, Kreitman M, Aguadé M, (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguadé, M.3
-
117
-
-
66249092428
-
Migration-selection balance and local adaptation of mitochondrial haplotypes in rufous-collared sparrows (Zonotrichia capensis) along an elevational gradient
-
Cheviron ZA, Brumfield RT, (2009) Migration-selection balance and local adaptation of mitochondrial haplotypes in rufous-collared sparrows (Zonotrichia capensis) along an elevational gradient. Evolution 63: 1593-1605.
-
(2009)
Evolution
, vol.63
, pp. 1593-1605
-
-
Cheviron, Z.A.1
Brumfield, R.T.2
|