-
2
-
-
0004128472
-
-
Cambridge University Press, Cambridge, England
-
EDWARDS, A. W. F. 1972. Likelihood. Cambridge University Press, Cambridge, England.
-
(1972)
Likelihood
-
-
Edwards, A.W.F.1
-
4
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
5
-
-
0014092973
-
A method for estimating the number of invariant amino acid positions in a gene using cytochrome c as a model case
-
FITCH, W. M., and E. MARGOLIASH. 1967. A method for estimating the number of invariant amino acid positions in a gene using cytochrome c as a model case. Biochem. Genet. 1:65-71.
-
(1967)
Biochem. Genet.
, vol.1
, pp. 65-71
-
-
Fitch, W.M.1
Margoliash, E.2
-
6
-
-
0014860857
-
An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution
-
FITCH, W. M., and E. MARKOWITZ. 1970. An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution. Biochem. Genet. 4:579-593.
-
(1970)
Biochem. Genet.
, vol.4
, pp. 579-593
-
-
Fitch, W.M.1
Markowitz, E.2
-
7
-
-
0028887457
-
Success of maximum likelihood phylogeny inference in the four-taxon case
-
GAUT, B. S., and P. O. LEWIS. 1995. Success of maximum likelihood phylogeny inference in the four-taxon case. Mol. Biol. Evol. 12:152-162.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 152-162
-
-
Gaut, B.S.1
Lewis, P.O.2
-
8
-
-
0029068893
-
Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites
-
GU, X., Y.-X. FU, and W.-H. LI. 1995. Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12:546-557.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 546-557
-
-
Gu, X.1
Fu, Y.-X.2
Li, W.-H.3
-
9
-
-
0022376704
-
Dating the human-ape split by a molecular clock of mitochondrial DNA
-
HASEGAWA, M., H. KISHINO, and T. YANO. 1985. Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
10
-
-
0029974057
-
Deep-level diagnostic value of the rDNA-ITS region
-
HERSHKOVITZ, M. A., and L. A. LEWIS. 1996. Deep-level diagnostic value of the rDNA-ITS region. Mol. Biol. Evol. 13:1276-1295.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 1276-1295
-
-
Hershkovitz, M.A.1
Lewis, L.A.2
-
11
-
-
11944268967
-
Performance of phylogenetic methods in simulation
-
HUELSENBECK, J. P. 1995a. Performance of phylogenetic methods in simulation. Syst. Biol. 44:17-48.
-
(1995)
Syst. Biol.
, vol.44
, pp. 17-48
-
-
Huelsenbeck, J.P.1
-
12
-
-
0029113744
-
The robustness of two phylogenetic methods: Four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining
-
_. 1995b. The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. Mol. Biol. Evol. 12: 843-849.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 843-849
-
-
-
13
-
-
0002410257
-
Parametric bootstrapping in molecular phylogenetics: Applications and performance
-
J. D. FERRARIS and S. R. PALUMBI, eds. Wiley-Liss, New York
-
HUELSENBECK, J. P., D. M. HILLIS, and R. JONES. 1996. Parametric bootstrapping in molecular phylogenetics: applications and performance. Pp. 19-45 in J. D. FERRARIS and S. R. PALUMBI, eds. Molecular zoology: advances, strategies, and protocols. Wiley-Liss, New York.
-
(1996)
Molecular Zoology: Advances, Strategies, and Protocols
, pp. 19-45
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
Jones, R.3
-
14
-
-
0000732090
-
Evolution of protein molecules
-
H. N. MUNRO, ed. Academic Press, New York
-
JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. N. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
15
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
16
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
-
LAKE, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
17
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
LOCKHART, P. J., M. A. STEEL, M. D. HENDY, and D. PENNY. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:650-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 650-1612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
18
-
-
0001008029
-
An efficient method for finding the minimum of a function of several variables without calculating derivatives
-
POWELL, M. J. D. 1964. An efficient method for finding the minimum of a function of several variables without calculating derivatives. Comp. J. 7:155-162.
-
(1964)
Comp. J.
, vol.7
, pp. 155-162
-
-
Powell, M.J.D.1
-
19
-
-
0344545937
-
A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences
-
in press
-
ROGERS, J. S., and D. L. SWOFFORD. 1999. A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences. Syst. Biol. (in press).
-
(1999)
Syst. Biol.
-
-
Rogers, J.S.1
Swofford, D.L.2
-
20
-
-
0032766033
-
Multiple local maxima for likelihoods of phylogenetic trees: A simulation study
-
_. 1999. Multiple local maxima for likelihoods of phylogenetic trees: a simulation study. Mol. Biol. Evol. 16: 1079-1085.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1079-1085
-
-
-
21
-
-
12044253706
-
The maximum likelihood point for a phylogenetic tree is not unique
-
STEELE, M. 1994. The maximum likelihood point for a phylogenetic tree is not unique. Syst. Biol. 43:560-564.
-
(1994)
Syst. Biol.
, vol.43
, pp. 560-564
-
-
Steele, M.1
-
22
-
-
0028807391
-
Among-site rate variation and phylogenetic analysis of 12S rRNA data in sigmodontine rodents
-
SULLIVAN, J., K. E. HOLSINGER, and C. SIMON. 1995. Among-site rate variation and phylogenetic analysis of 12S rRNA data in sigmodontine rodents. Mol. Biol. Evol. 12:988-1001.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 988-1001
-
-
Sullivan, J.1
Holsinger, K.E.2
Simon, C.3
-
23
-
-
0029880314
-
The effect of topology on estimates of among-site rate variation
-
_. 1996. The effect of topology on estimates of among-site rate variation. J. Mol. Evol. 42:308-312.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 308-312
-
-
-
24
-
-
0031224772
-
Molecular systematics and phylogeography of the peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood
-
SULLIVAN, J., J. A. MARKERT, and C. W. KILPATRICK. 1997. Molecular systematics and phylogeography of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood. Syst. Biol. 46:426-440.
-
(1997)
Syst. Biol.
, vol.46
, pp. 426-440
-
-
Sullivan, J.1
Markert, J.A.2
Kilpatrick, C.W.3
-
25
-
-
0002618746
-
Are guinea pigs rodents? the importance of adequate models in molecular phylogenetics
-
SULLIVAN, J., and D. L. SWOFFORD. 1997. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics. J. Mamm. Evol. 4:77-86.
-
(1997)
J. Mamm. Evol.
, vol.4
, pp. 77-86
-
-
Sullivan, J.1
Swofford, D.L.2
-
26
-
-
0031046929
-
Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony
-
TOURASSE, N. J., and M. GOUY. 1997. Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony. Mol. Biol. Evol. 14:287-298.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 287-298
-
-
Tourasse, N.J.1
Gouy, M.2
-
27
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
UZZELL, T., and K. W. CORBIN. 1971. Fitting discrete probability distributions to evolutionary events. Science 172: 1089-1096.
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
28
-
-
0002574561
-
Evolutionary trees of apes and humans from DNA sequences
-
A. J. LOCK and C. R. PETERS, eds.
-
WADDELL, P., and D. PENNY. 1996. Evolutionary trees of apes and humans from DNA sequences. Pp. 53-73 in A. J. LOCK and C. R. PETERS, eds. Handbook of symbolic evolution. Clarendon Press, Oxford.
-
(1996)
Handbook of Symbolic Evolution Clarendon Press, Oxford
, pp. 53-73
-
-
Waddell, P.1
Penny, D.2
-
29
-
-
0027496790
-
Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA
-
WAKELEY, J. 1993. Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA. Mol. Biol. Evol. 36:613-623.
-
(1993)
Mol. Biol. Evol.
, vol.36
, pp. 613-623
-
-
Wakeley, J.1
-
30
-
-
0027132974
-
Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
YANG, Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
31
-
-
0028214103
-
Estimating the pattern of nucleotide substitution
-
_. 1994a. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39:105-111.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 105-111
-
-
-
32
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
_. 1994b. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
-
33
-
-
0030451420
-
Among-site rate variation and its impact on phylogenetic analyses
-
_. 1996a. Among-site rate variation and its impact on phylogenetic analyses. TREE 11:367-372.
-
(1996)
TREE
, vol.11
, pp. 367-372
-
-
-
34
-
-
0029878719
-
Phylogenetic analysis using parsimony and likelihood methods
-
_. 1996b. Phylogenetic analysis using parsimony and likelihood methods. J. Mol. Evol. 42:294-307.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 294-307
-
-
-
35
-
-
0030638573
-
How often do wrong models produce better phylogenies?
-
_. 1997. How often do wrong models produce better phylogenies? Mol. Biol. Evol. 14:105-108.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 105-108
-
-
-
36
-
-
0029892459
-
Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rate among sites
-
YANG, Z., and S. KUMAR. 1996. Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rate among sites. Mol. Biol. Evol. 13: 650-659.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 650-659
-
-
Yang, Z.1
Kumar, S.2
-
37
-
-
0029469716
-
Maximum likelihood trees from DNA sequences: A peculiar statistical estimation problem
-
YANG, Z., N. GOLDMAN, and A. FRIDAY. 1995. Maximum likelihood trees from DNA sequences: a peculiar statistical estimation problem. Syst. Biol. 44:384-399.
-
(1995)
Syst. Biol.
, vol.44
, pp. 384-399
-
-
Yang, Z.1
Goldman, N.2
Friday, A.3
|