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Volumn 22, Issue 3, 2005, Pages 620-629

Evolution of duplicate control regions in the mitochondrial genomes of metazoa: A case study with Australasian Ixodes ticks

Author keywords

Concerted evolution; Duplicate control regions; Gene rearrangement; Ixodes ticks

Indexed keywords

ARTICLE; DNA SEQUENCE; EVOLUTION; GENE CONVERSION; GENE DUPLICATION; GENE REPLICATION; GENETIC MARKER; GENOME; IXODES; METAZOON; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ANALYSIS; TAXONOMY;

EID: 14544298002     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msi047     Document Type: Article
Times cited : (133)

References (37)
  • 1
    • 0031904632 scopus 로고    scopus 로고
    • Mitochondrial gene rearrangement in the sea cucumber genus Cucumaria
    • Arndt, A., and M. J. Smith. 1998. Mitochondrial gene rearrangement in the sea cucumber genus Cucumaria. Mol. Biol. Evol. 15:1009-1016.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1009-1016
    • Arndt, A.1    Smith, M.J.2
  • 2
    • 0022274030 scopus 로고
    • Animal mitochondrial DNA: An extreme example of genetic economy
    • Attardi, G. 1985. Animal mitochondrial DNA: an extreme example of genetic economy. Int. Rev. Cytol. 93:93-145.
    • (1985) Int. Rev. Cytol. , vol.93 , pp. 93-145
    • Attardi, G.1
  • 3
    • 14544284865 scopus 로고    scopus 로고
    • Systematics and evolution of ticks with a list of valid genus and species names
    • Barker, S. C., and A. Murrell. 2004. Systematics and evolution of ticks with a list of valid genus and species names. Parasitology 129(Suppl.).
    • (2004) Parasitology , vol.129 , Issue.SUPPL.
    • Barker, S.C.1    Murrell, A.2
  • 4
    • 0343340115 scopus 로고    scopus 로고
    • Mitochondrial genomic rearrangements in songbirds
    • Bensch, S., and A. Harlid. 2000. Mitochondrial genomic rearrangements in songbirds. Mol. Biol. Evol. 17:107-113.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 107-113
    • Bensch, S.1    Harlid, A.2
  • 5
    • 0023046803 scopus 로고
    • RNA mapping on Drosophila mitochondrial DNA: Precursors and template strands
    • Berthier, F., M. Renaud, S. Alziari, and R. Durand. 1986. RNA mapping on Drosophila mitochondrial DNA: precursors and template strands. Nucleic Acids Res. 14:4519-4533.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 4519-4533
    • Berthier, F.1    Renaud, M.2    Alziari, S.3    Durand, R.4
  • 6
    • 0031796295 scopus 로고    scopus 로고
    • Mitochondrial gene order is not conserved in arthropods: Prostriate and metastriate tick mitochondrial genomes
    • Black, W. C., and R. L. Roehrdanz. 1998. Mitochondrial gene order is not conserved in arthropods: prostriate and metastriate tick mitochondrial genomes. Mol. Biol. Evol. 15:1772-1785.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1772-1785
    • Black, W.C.1    Roehrdanz, R.L.2
  • 7
    • 0038109027 scopus 로고    scopus 로고
    • The mitochondrial DNA replication bubble has not burst
    • Bogenhagen, D. F., and D. A. Clayton. 2003. The mitochondrial DNA replication bubble has not burst. Trends Biochem. Sci. 28:357-360.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 357-360
    • Bogenhagen, D.F.1    Clayton, D.A.2
  • 8
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore, J. L. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27:1767-1780.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 9
    • 0001298772 scopus 로고    scopus 로고
    • The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals
    • D. Sankoff and J. H. Nadeau, eds. Kluwer Academic Publishers, Dordrecht, The Netherlands
    • -. 2000. The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals. Pp. 133-147 in D. Sankoff and J. H. Nadeau, eds. Comparative genomics. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (2000) Comparative Genomics , pp. 133-147
  • 10
    • 0032976068 scopus 로고    scopus 로고
    • The novel mitochondrial gene arrangement of the cattle tick. Boophilus microplus: Fivefold tandem repetition of a coding region
    • Campbell, N. J. H., and S. C. Barker. 1999. The novel mitochondrial gene arrangement of the cattle tick, Boophilus microplus: Fivefold tandem repetition of a coding region. Mol. Biol. Evol. 16:732-740.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 732-740
    • Campbell, N.J.H.1    Barker, S.C.2
  • 11
    • 0025233912 scopus 로고
    • Mapping and characterization of Paracentrotus lividus mitochondrial transcripts: Multiple and overlapping transcription units
    • Cantatore, P., M. Roberti, P. Loguercio Polosa, A. Mustich, and M. N. Gadaleta. 1990. Mapping and characterization of Paracentrotus lividus mitochondrial transcripts: multiple and overlapping transcription units. Curr. Genet. 17:235-245.
    • (1990) Curr. Genet. , vol.17 , pp. 235-245
    • Cantatore, P.1    Roberti, M.2    Loguercio Polosa, P.3    Mustich, A.4    Gadaleta, M.N.5
  • 12
    • 0019978703 scopus 로고
    • Replication of animal mitochondrial DNA
    • Clayton, D. A. 1982. Replication of animal mitochondrial DNA. Cell 28:693-705.
    • (1982) Cell , vol.28 , pp. 693-705
    • Clayton, D.A.1
  • 13
    • 0034939490 scopus 로고    scopus 로고
    • Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona
    • Eberhard, J. R., T. F. Wright, and E. Bermingham. 2001. Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Mol. Biol. Evol. 18:1330-1342.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1330-1342
    • Eberhard, J.R.1    Wright, T.F.2    Bermingham, E.3
  • 14
    • 0019332324 scopus 로고
    • Origin and direction of replication in the mitochondrial DNA molecules from the genus Drosophila
    • Goddard, J. M., and D. R. Wolstenholme. 1980. Origin and direction of replication in the mitochondrial DNA molecules from the genus Drosophila. Nucleic Acids Res. 8:741-757.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 741-757
    • Goddard, J.M.1    Wolstenholme, D.R.2
  • 15
    • 0038825342 scopus 로고    scopus 로고
    • Response: The mitochondrial DNA replication bubble has not burst
    • Holt, I. J., and H. T. Jacobs. 2003. Response: the mitochondrial DNA replication bubble has not burst. Trends Biochem. Sci. 28:355-356.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 355-356
    • Holt, I.J.1    Jacobs, H.T.2
  • 16
    • 0034598918 scopus 로고    scopus 로고
    • Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA
    • Holt, I. J., H. E. Lorimer, and H. T. Jacobs. 2000. Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA. Cell 100:515-524.
    • (2000) Cell , vol.100 , pp. 515-524
    • Holt, I.J.1    Lorimer, H.E.2    Jacobs, H.T.3
  • 17
    • 0029909927 scopus 로고    scopus 로고
    • Gene rearrangements in snake mitochondrial genomes: Highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster
    • Kumazawa, Y., H. Ota, M. Nishida, and T. Ozawa. 1996. Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Mol. Biol. Evol. 13:1242-1254.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1242-1254
    • Kumazawa, Y.1    Ota, H.2    Nishida, M.3    Ozawa, T.4
  • 18
    • 0031696736 scopus 로고    scopus 로고
    • The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
    • -. 1998. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics 150:313-329.
    • (1998) Genetics , vol.150 , pp. 313-329
  • 19
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave, C., G. Preparata, C. Saccone, and G. Serio. 1984. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20:86-93.
    • (1984) J. Mol. Evol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 20
    • 0034026576 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus
    • Lavrov, D. V., J. L. Boore, and W. M. Brown. 2000. The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus. Mol. Biol. Evol. 5:813-824.
    • (2000) Mol. Biol. Evol. , vol.5 , pp. 813-824
    • Lavrov, D.V.1    Boore, J.L.2    Brown, W.M.3
  • 21
    • 0035660350 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first description of duplication of a control region in fish
    • Lee, J. S., M. Miya, Y. S. Lee, C. G. Kim, E. H. Park, Y. Aoki, and M. Nishida. 2001. The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first description of duplication of a control region in fish. Gene 280:1-7.
    • (2001) Gene , vol.280 , pp. 1-7
    • Lee, J.S.1    Miya, M.2    Lee, Y.S.3    Kim, C.G.4    Park, E.H.5    Aoki, Y.6    Nishida, M.7
  • 22
    • 0028363062 scopus 로고
    • Numt, a recent transfer and tandem amplification of mitochondrial-DNA to the nuclear genome of the domestic cat
    • Lopez, J. V., N. Yuhki, R. Masuda, W. Modi, and S. J. Obrien. 1994. Numt, a recent transfer and tandem amplification of mitochondrial-DNA to the nuclear genome of the domestic cat. J. Mol. Evol. 39:174-190.
    • (1994) J. Mol. Evol. , vol.39 , pp. 174-190
    • Lopez, J.V.1    Yuhki, N.2    Masuda, R.3    Modi, W.4    Obrien, S.J.5
  • 23
    • 0032169857 scopus 로고    scopus 로고
    • Multiple independent origins of mitochondrial gene order in birds
    • Mindell, D. P., M. D. Sorenson, and D. E. Dimcheff. 1998. Multiple independent origins of mitochondrial gene order in birds. Proc. Natl. Acad. Sci. USA 95:10693-10697.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 10693-10697
    • Mindell, D.P.1    Sorenson, M.D.2    Dimcheff, D.E.3
  • 24
    • 0442292205 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the sea-firefly, Vargula hilgendorfii (Crustacea, Ostracoda) with duplicate control regions
    • Ogoh, K., and Y. Ohmiya. 2004. Complete mitochondrial DNA sequence of the sea-firefly, Vargula hilgendorfii (Crustacea, Ostracoda) with duplicate control regions. Gene 327:131-139.
    • (2004) Gene , vol.327 , pp. 131-139
    • Ogoh, K.1    Ohmiya, Y.2
  • 25
    • 0042666852 scopus 로고    scopus 로고
    • Animal mitochondrial DNA recombination revisited
    • Rokas, A., E. Ladoukakis, and E. Zouros. 2003. Animal mitochondrial DNA recombination revisited. Trends Ecol. Evol. 18:411-417.
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 411-417
    • Rokas, A.1    Ladoukakis, E.2    Zouros, E.3
  • 26
    • 0017665790 scopus 로고
    • The mitochondrial DNA of Drosophila melanogaster exists in two distinct and stable superhelical forms
    • Rubenstein, J. L., D. Brutlag, and D. A. Clayton. 1977. The mitochondrial DNA of Drosophila melanogaster exists in two distinct and stable superhelical forms. Cell 12:471-482.
    • (1977) Cell , vol.12 , pp. 471-482
    • Rubenstein, J.L.1    Brutlag, D.2    Clayton, D.A.3
  • 28
    • 0030920779 scopus 로고    scopus 로고
    • Mitochondrial DNA maintenance in vertebrates
    • Shadel, G. S., and D. A. Clayton. 1997. Mitochondrial DNA maintenance in vertebrates. Annu. Rev. Biochem. 66:409-435.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 409-435
    • Shadel, G.S.1    Clayton, D.A.2
  • 29
    • 2942754225 scopus 로고    scopus 로고
    • The mitochondrial genomes of soft ticks have an arrangement of genes that has remained unchanged for over 400 million years
    • Shao, R., Y. Aoki, H. Mitani, N. Tabuchi, S. C. Barker, and M. Fukunaga. 2004. The mitochondrial genomes of soft ticks have an arrangement of genes that has remained unchanged for over 400 million years. Insect Mol. Biol. 13:219-224.
    • (2004) Insect Mol. Biol. , vol.13 , pp. 219-224
    • Shao, R.1    Aoki, Y.2    Mitani, H.3    Tabuchi, N.4    Barker, S.C.5    Fukunaga, M.6
  • 30
    • 0037359951 scopus 로고    scopus 로고
    • The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes
    • Shao, R., and S. C. Barker. 2003. The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes. Mol. Biol. Evol. 20:362-370.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 362-370
    • Shao, R.1    Barker, S.C.2
  • 31
    • 0034883153 scopus 로고    scopus 로고
    • Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects
    • Shao, R., N. J. H. Campbell, E. R. Schmidt, and S. C. Barker. 2001. Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects. Mol. Biol. Evol. 18:1828-1832.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1828-1832
    • Shao, R.1    Campbell, N.J.H.2    Schmidt, E.R.3    Barker, S.C.4
  • 33
    • 0033060854 scopus 로고    scopus 로고
    • The mitochondrial genome: Structure, transcription, translation and replication
    • Taanman, J. W. 1999. The mitochondrial genome: structure, transcription, translation and replication. Biochim. Biophys. Acta 1410:103-123.
    • (1999) Biochim. Biophys. Acta , vol.1410 , pp. 103-123
    • Taanman, J.W.1
  • 34
    • 0033928582 scopus 로고    scopus 로고
    • Maintenance of human rearranged mitochondrial DNAs in long-term cultured transmitochondrial cell lines
    • Tang, Y. Y., G. Manfredi, M. Hirano, and E. A. Schon. 2000. Maintenance of human rearranged mitochondrial DNAs in long-term cultured transmitochondrial cell lines. Mol. Biol. Cell 11:2349-2358.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 2349-2358
    • Tang, Y.Y.1    Manfredi, G.2    Hirano, M.3    Schon, E.A.4
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 36
    • 0029116754 scopus 로고
    • Mitochondrial transcription initiation: Promoter structures and RNA polymerases
    • Tracy, R. L., and D. B. Stern. 1995. Mitochondrial transcription initiation: promoter structures and RNA polymerases. Curr. Genet. 28:205-216.
    • (1995) Curr. Genet. , vol.28 , pp. 205-216
    • Tracy, R.L.1    Stern, D.B.2
  • 37
    • 0034811093 scopus 로고    scopus 로고
    • Both heavy strand replication origins are active in partially duplicated human mitochondrial DNAs
    • Umeda, S., Y. Tang, M. Okamoto, N. Hamasaki, E. A. Schon, and D. Kang. 2001. Both heavy strand replication origins are active in partially duplicated human mitochondrial DNAs. Biochem. Biophys. Res. Commun. 286:681-687.
    • (2001) Biochem. Biophys. Res. Commun. , vol.286 , pp. 681-687
    • Umeda, S.1    Tang, Y.2    Okamoto, M.3    Hamasaki, N.4    Schon, E.A.5    Kang, D.6


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