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Volumn 16, Issue 10, 1999, Pages 1357-1368

Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees

Author keywords

Chimpanzees; D loop; Gamma distribution; Humans; Mitochondrial DNA; Mutation rate variation

Indexed keywords

MITOCHONDRIAL DNA;

EID: 0032873641     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026046     Document Type: Article
Times cited : (111)

References (45)
  • 1
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • ANDERSON, S., A. T. BANKIER, B. G. BARRELL et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.1    Bankier, A.T.2    Barrell, B.G.3
  • 2
    • 0030056912 scopus 로고    scopus 로고
    • The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism
    • ARIS-BROSOU, S., and L. EXCOFFIER. 1996. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol. Biol. Evol. 13:494-504.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 494-504
    • Aris-Brosou, S.1    Excoffier, L.2
  • 3
    • 0029097280 scopus 로고
    • The number of segregating sites in expanding human populations, with implications for estimates of demographic parameters
    • BERTORELLE, G., and M. SLATKIN. 1995. The number of segregating sites in expanding human populations, with implications for estimates of demographic parameters. Mol. Biol. Evol. 12:887-892.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 887-892
    • Bertorelle, G.1    Slatkin, M.2
  • 4
    • 0029365975 scopus 로고
    • Toward a characterization of landscapes of combinatorial optimization problems, with special attention to the phylogeny problem
    • CHARLESTON, M. A. 1995. Toward a characterization of landscapes of combinatorial optimization problems, with special attention to the phylogeny problem. J. Comput. Biol. 2: 439-450.
    • (1995) J. Comput. Biol. , vol.2 , pp. 439-450
    • Charleston, M.A.1
  • 5
    • 0028963294 scopus 로고
    • The relationship between parsimony and maximum-likelihood analyses: Tree scores and confidence estimates for three real data sets
    • DEBRY, R. W., and L. G. ABELE. 1995. The relationship between parsimony and maximum-likelihood analyses: tree scores and confidence estimates for three real data sets. Mol. Biol. Evol. 12:291-297.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 291-297
    • Debry, R.W.1    Abele, L.G.2
  • 6
    • 0030877471 scopus 로고    scopus 로고
    • The geographic apportionment of mitochondrial genetic diversity in east african chimpanzees, Pan troglodytes schweinfurthii
    • GOLDBERG, T. L., and M. RUVOLO. 1997. The geographic apportionment of mitochondrial genetic diversity in east African chimpanzees, Pan troglodytes schweinfurthii. Mol. Biol. Evol. 14:976-984.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 976-984
    • Goldberg, T.L.1    Ruvolo, M.2
  • 8
    • 0031831298 scopus 로고    scopus 로고
    • Compilation of human mtDNA control region sequences
    • HANDT, O., S. MEYER, and A. VON HAESELER. 1998. Compilation of human mtDNA control region sequences. Nucleic Acids Res. 26:126-129.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 126-129
    • Handt, O.1    Meyer, S.2    Von Haeseler, A.3
  • 9
    • 0027428406 scopus 로고
    • Toward a more accurate time scale for the human mitochondrial DNA tree
    • HASEGAWA, M., A. DIRIENZO, T. D. KOCHER, and A. C. WILSON. 1993. Toward a more accurate time scale for the human mitochondrial DNA tree. J. Mol. Evol. 37:347-354.
    • (1993) J. Mol. Evol. , vol.37 , pp. 347-354
    • Hasegawa, M.1    Dirienzo, A.2    Kocher, T.D.3    Wilson, A.C.4
  • 10
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA, M., H. KISHINO, and T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 11
    • 0026521195 scopus 로고
    • Human origins and analysis of mitochondrial DNA sequences
    • HEDGES, S. B., S. KUMAR, K. TAMURA, and M. STONEKING. 1992. Human origins and analysis of mitochondrial DNA sequences. Science 255:737-739.
    • (1992) Science , vol.255 , pp. 737-739
    • Hedges, S.B.1    Kumar, S.2    Tamura, K.3    Stoneking, M.4
  • 12
    • 0028894410 scopus 로고
    • Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs
    • HORAI, S., K. HAYASAKA, R. KONDO, K. TSUGANE, and N. TAKAHATA. 1995. Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc. Natl. Acad. Sci. USA 92:532-536.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 532-536
    • Horai, S.1    Hayasaka, K.2    Kondo, R.3    Tsugane, K.4    Takahata, N.5
  • 13
    • 0029759163 scopus 로고    scopus 로고
    • How rapidly does the human mitochondrial genome evolve?
    • HOWELL, N., I. KUBACHA, and D. A. MACKEY. 1996. How rapidly does the human mitochondrial genome evolve? Am. J. Hum. Genet. 59:501-509.
    • (1996) Am. J. Hum. Genet. , vol.59 , pp. 501-509
    • Howell, N.1    Kubacha, I.2    Mackey, D.A.3
  • 14
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • D. J. FUTUYMA and J. D. ANTONOVICS, eds. Oxford University Press, New York
    • HUDSON, R. R. 1990. Gene genealogies and the coalescent process. Pp. 1-44 in D. J. FUTUYMA and J. D. ANTONOVICS, eds. Oxford surveys in evolutionary biology. Oxford University Press, New York.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 1-44
    • Hudson, R.R.1
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. MUNRO, ed. Academic Press, New York
    • JUKES, T., and C. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. N. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.1    Cantor, C.2
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0002538268 scopus 로고
    • Sequence evolution of mitochondrial DNA in humans and chimpanzees: Control region and protein-coding region
    • S. OSAWA and T. HONJO, eds. Springer-Verlag, Tokyo
    • KOCHER, T. D., and A. C. WILSON. 1991. Sequence evolution of mitochondrial DNA in humans and chimpanzees: control region and protein-coding region. Pp. 391-413 in S. OSAWA and T. HONJO, eds. Evolution of life: fossils, molecules and culture. Springer-Verlag, Tokyo.
    • (1991) Evolution of Life: Fossils, Molecules and Culture , pp. 391-413
    • Kocher, T.D.1    Wilson, A.C.2
  • 20
    • 0029027992 scopus 로고
    • Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
    • KUHNER, M. K., J. YAMATO, and J. FELSENSTEIN. 1995. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140:1421-1430.
    • (1995) Genetics , vol.140 , pp. 1421-1430
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 21
    • 0026667140 scopus 로고
    • Estimating substitution rates from molecular data using the coalescent
    • LUNDSTROM, R., S. TAVARÉ, and R. H. WARD. 1992a. Estimating substitution rates from molecular data using the coalescent. Proc. Natl. Acad. Sci. USA 89:5961-5965.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5961-5965
    • Lundstrom, R.1    Tavaré, S.2    Ward, R.H.3
  • 22
    • 0027055828 scopus 로고
    • Modeling the evolution of the human mitochondrial genome
    • _. 1992b. Modeling the evolution of the human mitochondrial genome. Math. Biosci. 112:319-335.
    • (1992) Math. Biosci. , vol.112 , pp. 319-335
  • 23
    • 0032779612 scopus 로고    scopus 로고
    • Pattern of nucleotide substitution and rate heterogeneity in the hyper-variable regions I and II of human mtDNA
    • MEYER, S., G. WEISS, and A. VON HAESELER. 1999. Pattern of nucleotide substitution and rate heterogeneity in the hyper-variable regions I and II of human mtDNA. Genetics 152: 1103-1110.
    • (1999) Genetics , vol.152 , pp. 1103-1110
    • Meyer, S.1    Weiss, G.2    Von Haeseler, A.3
  • 24
    • 0028128340 scopus 로고
    • Kin selection, social structure, gene flow, and the evolution of chimpanzees
    • MORIN, P. A., J. J. MOORE, R. CHAKRABORTY, L. JIN, J. GOODALL, and D. S. WOODRUFF. 1994. Kin selection, social structure, gene flow, and the evolution of chimpanzees. Science 265:1193-1201.
    • (1994) Science , vol.265 , pp. 1193-1201
    • Morin, P.A.1    Moore, J.J.2    Chakraborty, R.3    Jin, L.4    Goodall, J.5    Woodruff, D.S.6
  • 26
    • 0030898192 scopus 로고    scopus 로고
    • A high observed substitution rate in the human mitochondrial DNA control region
    • PARSONS, T. J., D. S. MUNIEC, K. SULLIVAN et al. (11 co-authors). 1997. A high observed substitution rate in the human mitochondrial DNA control region. Nat. Genet. 15: 363-368.
    • (1997) Nat. Genet. , vol.15 , pp. 363-368
    • Parsons, T.J.1    Muniec, D.S.2    Sullivan, K.3
  • 28
    • 0023375195 scopus 로고
    • The neighbor joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • SCHNEIDER, S., and L. EXCOFFIER. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152: 1079-1089
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 30
    • 0029880314 scopus 로고    scopus 로고
    • The effect of topology on estimates of among-site rate variation
    • SULLIVAN, J., K. E. HOLSINGER, and C. SIMON. 1996. The effect of topology on estimates of among-site rate variation. J. Mol. Evol. 42:308-312.
    • (1996) J. Mol. Evol. , vol.42 , pp. 308-312
    • Sullivan, J.1    Holsinger, K.E.2    Simon, C.3
  • 31
    • 0030014298 scopus 로고    scopus 로고
    • The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites
    • TAJIMA, F. 1996. The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics 143:1457-1465.
    • (1996) Genetics , vol.143 , pp. 1457-1465
    • Tajima, F.1
  • 32
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • TAMURA, K., and M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 33
    • 0015219691 scopus 로고
    • Fitting discrete probability distribution to evolutionary events
    • UZZELL, T., and K. W. CORBIN. 1971. Fitting discrete probability distribution to evolutionary events. Science 172: 1089-1096.
    • (1971) Science , vol.172 , pp. 1089-1096
    • Uzzell, T.1    Corbin, K.W.2
  • 36
    • 0027496790 scopus 로고
    • Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA
    • WAKELEY, J. 1993. Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA. J. Mol. Evol. 37:613-623.
    • (1993) J. Mol. Evol. , vol.37 , pp. 613-623
    • Wakeley, J.1
  • 37
    • 0031827528 scopus 로고    scopus 로고
    • Inference of population history using a likelihood approach
    • WEISS, G., and A. VON HAESELER. 1998. Inference of population history using a likelihood approach. Genetics 149: 1539-1546.
    • (1998) Genetics , vol.149 , pp. 1539-1546
    • Weiss, G.1    Von Haeseler, A.2
  • 38
    • 0030788183 scopus 로고    scopus 로고
    • Comparative nuclear and mitochondrial genome diversity in humans and chimpanzees
    • WISE, C. A., M. SRAML, D. C. RUBINSZTEIN, and S. EASTEAL. 1997. Comparative nuclear and mitochondrial genome diversity in humans and chimpanzees. Mol. Biol. Evol. 14: 707-716.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 707-716
    • Wise, C.A.1    Sraml, M.2    Rubinsztein, D.C.3    Easteal, S.4
  • 39
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • YANG, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-341.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-341
    • Yang, Z.1
  • 40
    • 0030451420 scopus 로고    scopus 로고
    • Among-site variation and its impact on phylogenetic analyses
    • _. 1996a. Among-site variation and its impact on phylogenetic analyses. TREE 11:367-372.
    • (1996) TREE , vol.11 , pp. 367-372
  • 41
    • 0030479279 scopus 로고    scopus 로고
    • Statistical properties of a DNA sample under the finite-sites model
    • _. 1996b. Statistical properties of a DNA sample under the finite-sites model. Genetics 144:1941-1950.
    • (1996) Genetics , vol.144 , pp. 1941-1950
  • 43
    • 0029892459 scopus 로고    scopus 로고
    • Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites
    • YANG, Z., and S. KUMAR. 1996. Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites. Mol. Biol. Evol. 13: 650-659.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 650-659
    • Yang, Z.1    Kumar, S.2
  • 44
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution in maximum likelihood phylogenetic estimation
    • YANG, Z., N. GOLDMAN, and A. E. FRIDAY. 1994. Comparison of models for nucleotide substitution in maximum likelihood phylogenetic estimation. Mol. Evol. Biol. 11:316-324.
    • (1994) Mol. Evol. Biol. , vol.11 , pp. 316-324
    • Yang, Z.1    Goldman, N.2    Friday, A.E.3
  • 45
    • 0029120814 scopus 로고
    • Mixed model analysis of DNA sequence evolution
    • YANG, Z., and T. WANG. 1995. Mixed model analysis of DNA sequence evolution. Biometrics 51:552-561.
    • (1995) Biometrics , vol.51 , pp. 552-561
    • Yang, Z.1    Wang, T.2


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