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Volumn 40, Issue 3, 2006, Pages 679-686

Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea

Author keywords

Eurasian nuthatch; McDonald Kreitman test; Mismatch distribution; Mitochondrial DNA; Natural selection; Phylogeography; Population expansion; Species limits

Indexed keywords

MITOCHONDRIAL DNA; OXIDOREDUCTASE;

EID: 33746774640     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.11.002     Document Type: Article
Times cited : (51)

References (40)
  • 1
    • 33746750810 scopus 로고    scopus 로고
    • Adams, J.M., 2002. Global land environments since the last interglacial. See .
  • 2
    • 0004187047 scopus 로고    scopus 로고
    • Harvard Univ. Press, Cambridge
    • Avise J.C. Phylogeography (2000), Harvard Univ. Press, Cambridge
    • (2000) Phylogeography
    • Avise, J.C.1
  • 3
    • 0032557042 scopus 로고    scopus 로고
    • Pleistocene phylogeographic effects on avian populations and the speciation process
    • Avise J.C., and Walker D. Pleistocene phylogeographic effects on avian populations and the speciation process. Proc. R. Soc. Lond. B 265 (1998) 457-463
    • (1998) Proc. R. Soc. Lond. B , vol.265 , pp. 457-463
    • Avise, J.C.1    Walker, D.2
  • 4
    • 1642285792 scopus 로고    scopus 로고
    • The incomplete natural history of mitochondria
    • Ballard J.W.O., and Whitlock M.C. The incomplete natural history of mitochondria. Mol. Ecol. 13 (2004) 729-744
    • (2004) Mol. Ecol. , vol.13 , pp. 729-744
    • Ballard, J.W.O.1    Whitlock, M.C.2
  • 5
    • 1642286464 scopus 로고    scopus 로고
    • The effect of selection on genealogies
    • Barton N.H., and Etheridge A.M. The effect of selection on genealogies. Genetics 166 (2004) 1115-1131
    • (2004) Genetics , vol.166 , pp. 1115-1131
    • Barton, N.H.1    Etheridge, A.M.2
  • 6
    • 0002047502 scopus 로고
    • Speciation and its ontology: the empirical consequences of alternative species concepts for understanding patterns and processes of differentiation
    • Otte D., and Endler J.A. (Eds), Sinauer, Sunderland, MA
    • Cracraft J. Speciation and its ontology: the empirical consequences of alternative species concepts for understanding patterns and processes of differentiation. In: Otte D., and Endler J.A. (Eds). In Speciation and Its Consequences (1989), Sinauer, Sunderland, MA 28-59
    • (1989) In Speciation and Its Consequences , pp. 28-59
    • Cracraft, J.1
  • 7
    • 33746752022 scopus 로고    scopus 로고
    • Cramp, S., Perrins, C.M., 1993. Handbook of the birds of Europe, the Middle East and North Africa. Vol. 7, Oxford University Press, Oxford.
  • 8
    • 0037202384 scopus 로고    scopus 로고
    • An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences
    • Creevey C., and McInerney J.O. An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene 300 (2002) 43-51
    • (2002) Gene , vol.300 , pp. 43-51
    • Creevey, C.1    McInerney, J.O.2
  • 11
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality against population growth, hitchhiking and background selection
    • Fu Y.-X. Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics 147 (1997) 915-925
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.-X.1
  • 15
    • 0037373324 scopus 로고    scopus 로고
    • Tests for positive selection on immune and reproductive genes in closely related species of the Murine genus Mus
    • Jansa S.A., Lundrigan B.L., and Tucker P.K. Tests for positive selection on immune and reproductive genes in closely related species of the Murine genus Mus. J. Mol. Evol. 56 (2003) 294-307
    • (2003) J. Mol. Evol. , vol.56 , pp. 294-307
    • Jansa, S.A.1    Lundrigan, B.L.2    Tucker, P.K.3
  • 16
    • 0001761462 scopus 로고    scopus 로고
    • Phylogeography of carrion, hooded, and jungle crows (Aves, Corvidae) inferred from partial sequencing of the mitochondrial cytochrome b gene
    • Kryukov A.P., and Suzuki H. Phylogeography of carrion, hooded, and jungle crows (Aves, Corvidae) inferred from partial sequencing of the mitochondrial cytochrome b gene. Russ. J. Genet. 36 (2000) 922-929
    • (2000) Russ. J. Genet. , vol.36 , pp. 922-929
    • Kryukov, A.P.1    Suzuki, H.2
  • 17
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: molecular evolutionary genetics analysis software
    • Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17 (2001) 1244-1245
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 19
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald J.H., and Kreitman M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351 (1991) 652-654
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 20
    • 1842287948 scopus 로고    scopus 로고
    • Historical demography and present day population structure of the greenfinch Carduelis chloris-an analysis of mtDNA control-region sequences
    • Merila J., Bjorkland M., and Baker A.J. Historical demography and present day population structure of the greenfinch Carduelis chloris-an analysis of mtDNA control-region sequences. Evolution 51 (1997) 946-956
    • (1997) Evolution , vol.51 , pp. 946-956
    • Merila, J.1    Bjorkland, M.2    Baker, A.J.3
  • 21
    • 0031014102 scopus 로고    scopus 로고
    • The genealogy of samples in models with selection
    • Neuhauser C., and Krone S.M. The genealogy of samples in models with selection. Genetics 145 (1997) 519-534
    • (1997) Genetics , vol.145 , pp. 519-534
    • Neuhauser, C.1    Krone, S.M.2
  • 22
    • 0032867365 scopus 로고    scopus 로고
    • The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory
    • Nielsen R., and Weinreich D.M. The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theory. Genetics 153 (1999) 497-506
    • (1999) Genetics , vol.153 , pp. 497-506
    • Nielsen, R.1    Weinreich, D.M.2
  • 23
    • 0042925636 scopus 로고    scopus 로고
    • Phylogeographic patterns in Motacilla flava and Motacilla citreola: species limits and population history
    • Pavlova A., Zink R.M., Drovetski S.V., Red'kin Ya., and Rohwer S. Phylogeographic patterns in Motacilla flava and Motacilla citreola: species limits and population history. Auk 120 (2003) 44-758
    • (2003) Auk , vol.120 , pp. 44-758
    • Pavlova, A.1    Zink, R.M.2    Drovetski, S.V.3    Red'kin, Ya.4    Rohwer, S.5
  • 24
    • 23744507900 scopus 로고    scopus 로고
    • Evolutionary history, population genetics, and gene flow in the common rosefinch (Carpodacus erythrinus)
    • Pavlova A., Zink R.M., and Rohwer S. Evolutionary history, population genetics, and gene flow in the common rosefinch (Carpodacus erythrinus). Mol. Phylogenet. Evol. 36 (2005) 669-681
    • (2005) Mol. Phylogenet. Evol. , vol.36 , pp. 669-681
    • Pavlova, A.1    Zink, R.M.2    Rohwer, S.3
  • 26
    • 0028279520 scopus 로고
    • Prediction of transmembrane segments in proteins utilising multiple sequence alignments
    • Persson N., and Argos P. Prediction of transmembrane segments in proteins utilising multiple sequence alignments. J. Mol. Biol. 237 (1994) 182-192
    • (1994) J. Mol. Biol. , vol.237 , pp. 182-192
    • Persson, N.1    Argos, P.2
  • 27
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 28
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analysis by the coalescent and other methods
    • Rozas J., Sanchez-DelBarrio J.C., Messequer X., and Rozas R. DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messequer, X.3    Rozas, R.4
  • 29
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA
    • Schneider S., and Excoffier L. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152 (1999) 1070-1089
    • (1999) Genetics , vol.152 , pp. 1070-1089
    • Schneider, S.1    Excoffier, L.2
  • 30
    • 33746769699 scopus 로고    scopus 로고
    • Schneider, S., Dueffer, J.-M., Roessli, D., Excoffier, L. (2000). Arlequin ver. 2.0: A software for population genetic data analysis. Genetics and Biometry laboratory, University of Geneva, Switzerland. Available from: .
  • 32
    • 33746770918 scopus 로고    scopus 로고
    • Swofford, D.L., 2000. PAUP*. Phylogenetic analysis using parsimony (* and other methods), Version 4.0b2. Sinauer, Sunderland, MA.
  • 33
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123 (1989) 585-595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 34
    • 0031908203 scopus 로고    scopus 로고
    • Departure from neutrality at the mitochondrial NADH dehydrogenase subunit2 gene in humans, but not in chimpanzees
    • Wise C.A., Sraml M., and Easteal S. Departure from neutrality at the mitochondrial NADH dehydrogenase subunit2 gene in humans, but not in chimpanzees. Genetics 148 (1998) 409-421
    • (1998) Genetics , vol.148 , pp. 409-421
    • Wise, C.A.1    Sraml, M.2    Easteal, S.3
  • 35
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15 (1998) 568-573
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
    • Yang, Z.1
  • 36
    • 17044410142 scopus 로고    scopus 로고
    • Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies
    • Zink R.M. Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies. Proc. R. Soc. Lond. B 272 (2004) 71-78
    • (2004) Proc. R. Soc. Lond. B , vol.272 , pp. 71-78
    • Zink, R.M.1
  • 37
    • 1442291633 scopus 로고    scopus 로고
    • The role of subspecies in obscuring avian biological diversity and obscuring conservation policy
    • Zink R.M. The role of subspecies in obscuring avian biological diversity and obscuring conservation policy. Proc. R. Soc. Lond. B 271 (2004) 561-564
    • (2004) Proc. R. Soc. Lond. B , vol.271 , pp. 561-564
    • Zink, R.M.1
  • 39
    • 0036275116 scopus 로고    scopus 로고
    • Phylogeographic patterns in the Great Spotted Woodpecker (Dendrocopos major) across Eurasia
    • Zink R.M., Drovetski S., and Rohwer S. Phylogeographic patterns in the Great Spotted Woodpecker (Dendrocopos major) across Eurasia. J. Avian Biol. 35 (2002) 175-178
    • (2002) J. Avian Biol. , vol.35 , pp. 175-178
    • Zink, R.M.1    Drovetski, S.2    Rohwer, S.3
  • 40


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.