-
1
-
-
25444523778
-
Natural antisense transcripts
-
Werner A, (2005) Natural antisense transcripts. RNA Biol 2: 53-62.
-
(2005)
RNA Biol
, vol.2
, pp. 53-62
-
-
Werner, A.1
-
2
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, et al. (2005) Antisense transcription in the mammalian transcriptome. Science 309: 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
-
3
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
Yelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, et al. (2003) Widespread occurrence of antisense transcription in the human genome. Nat Biotechnol 21: 379-386.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
Levanon, E.Y.4
Goldstein, O.5
-
5
-
-
79960521632
-
Extensive relationship between antisense transcription and alternative splicing in the human genome
-
Morrissy AS, Griffith M, Marra MA, (2011) Extensive relationship between antisense transcription and alternative splicing in the human genome. Genome Res 21: 1203-1212.
-
(2011)
Genome Res
, vol.21
, pp. 1203-1212
-
-
Morrissy, A.S.1
Griffith, M.2
Marra, M.A.3
-
6
-
-
79952901680
-
Enhancer function: new insights into the regulation of tissue-specific gene expression
-
Ong CT, Corces VG, (2011) Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat Rev Genet 12: 283-293.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 283-293
-
-
Ong, C.T.1
Corces, V.G.2
-
7
-
-
0032479079
-
Going the distance: a current view of enhancer action
-
Blackwood EM, Kadonaga JT, (1998) Going the distance: a current view of enhancer action. Science 281: 60-3.
-
(1998)
Science
, vol.281
, pp. 60-63
-
-
Blackwood, E.M.1
Kadonaga, J.T.2
-
8
-
-
77952908743
-
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
-
De Santa F, Barozzi I, Mietton F, Ghisletti S, Polletti S, et al. (2010) A large fraction of extragenic RNA pol II transcription sites overlap enhancers. PLoS Biol 8: e1000384.
-
(2010)
PLoS Biol
, vol.8
-
-
de Santa, F.1
Barozzi, I.2
Mietton, F.3
Ghisletti, S.4
Polletti, S.5
-
9
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, et al. (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature 465: 182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
-
10
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT, (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
11
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P, Nielsen J, Kammler S, Lykke-Andersen S, Christensen MS, et al. (2008) RNA exosome depletion reveals transcription upstream of active human promoters. Science 322: 1851-1854.
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
Lykke-Andersen, S.4
Christensen, M.S.5
-
12
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, et al. (2008) Divergent transcription from active promoters. Science 322: 1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
-
13
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
Feng J, Bi C, Clark BS, Mady R, Shah P, et al. (2006) The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev 20: 1470-1484.
-
(2006)
Genes Dev
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
-
14
-
-
78649690492
-
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
-
Underwood JG, Uzilov AV, Katzman S, Onodera CS, Mainzer JE, et al. (2010) FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. Nat Methods 7: 995-1001.
-
(2010)
Nat Methods
, vol.7
, pp. 995-1001
-
-
Underwood, J.G.1
Uzilov, A.V.2
Katzman, S.3
Onodera, C.S.4
Mainzer, J.E.5
-
15
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. (2002) The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
16
-
-
0034720002
-
Comparison of human adult and fetal expression and identi_cation of 535 housekeeping/maintenance genes
-
Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M, (2000) Comparison of human adult and fetal expression and identi_cation of 535 housekeeping/maintenance genes. Physiol Genomics 2: 143-147.
-
(2000)
Physiol Genomics
, vol.2
, pp. 143-147
-
-
Warrington, J.A.1
Nair, A.2
Mahadevappa, M.3
Tsyganskaya, M.4
-
17
-
-
67651243800
-
Neural differentiation of embryonic stem cells in vitro: a road map to neurogenesis in the embryo
-
Abranches E, Silva M, Pradier L, Schulz H, Hummel O, et al. (2009) Neural differentiation of embryonic stem cells in vitro: a road map to neurogenesis in the embryo. PLoS One 4: e6286.
-
(2009)
PLoS One
, vol.4
-
-
Abranches, E.1
Silva, M.2
Pradier, L.3
Schulz, H.4
Hummel, O.5
-
18
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
-
19
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen X, Xu H, Yuan P, Fang F, Huss M, et al. (2008) Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133: 1106-1117.
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
-
20
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
-
21
-
-
60149091656
-
ChIP-seq accurately predicts tissuespecific activity of enhancers
-
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, et al. (2009) ChIP-seq accurately predicts tissuespecific activity of enhancers. Nature 457: 854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
-
22
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, et al. (2008) Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454: 766-770.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
-
23
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, et al. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
-
24
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, et al. (2006) In vivo enhancer analysis of human conserved non-coding sequences. Nature 444: 499-502.
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
-
28
-
-
33646133653
-
The UCSC Known Genes
-
Hsu F, Kent WJ, Clawson H, Kuhn RM, Diekhans M, et al. (2006) The UCSC Known Genes. Bioinformatics 22: 1036-1046.
-
(2006)
Bioinformatics
, vol.22
, pp. 1036-1046
-
-
Hsu, F.1
Kent, W.J.2
Clawson, H.3
Kuhn, R.M.4
Diekhans, M.5
-
29
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res 37: D211-5.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
-
30
-
-
23144458473
-
InterProScan: protein domains identifier
-
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, et al. (2005) InterProScan: protein domains identifier. Nucleic Acids Res 33: W116-20.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
-
31
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
32
-
-
41149131596
-
Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach
-
Tikole S, Sankararamakrishnan R, (2008) Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach. Biochem Biophys Res Commun 369: 1166-1168.
-
(2008)
Biochem Biophys Res Commun
, vol.369
, pp. 1166-1168
-
-
Tikole, S.1
Sankararamakrishnan, R.2
-
33
-
-
34547582418
-
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, et al. (2007) CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 35: W345-9.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.Q.3
Liu, X.Q.4
Zhao, S.Q.5
-
34
-
-
54949102049
-
Self-organized formation of polarized cortical tissues from ESCs and its active manipulation by extrinsic signals
-
Eiraku M, Watanabe K, Matsuo-Takasaki M, Kawada M, Yonemura S, et al. (2008) Self-organized formation of polarized cortical tissues from ESCs and its active manipulation by extrinsic signals. Cell Stem Cell 3: 519-532.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 519-532
-
-
Eiraku, M.1
Watanabe, K.2
Matsuo-Takasaki, M.3
Kawada, M.4
Yonemura, S.5
-
35
-
-
67651002028
-
Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells
-
Ideue T, Hino K, Kitao S, Yokoi T, Hirose T, (2009) Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells. RNA 15: 1578-1587.
-
(2009)
RNA
, vol.15
, pp. 1578-1587
-
-
Ideue, T.1
Hino, K.2
Kitao, S.3
Yokoi, T.4
Hirose, T.5
-
36
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, et al. (2011) A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472: 120-124.
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
-
37
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, et al. (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143: 46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
-
38
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, et al. (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148: 84-98.
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
-
39
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
Wang X, Arai S, Song X, Reichart D, Du K, et al. (2008) Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature 454: 126-130.
-
(2008)
Nature
, vol.454
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
Reichart, D.4
Du, K.5
-
40
-
-
79957865299
-
Pre-mRNA splicing: where and when in the nucleus
-
Han J, Xiong J, Wang D, Fu XD, (2011) Pre-mRNA splicing: where and when in the nucleus. Trends Cell Biol 21: 336-343.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 336-343
-
-
Han, J.1
Xiong, J.2
Wang, D.3
Fu, X.D.4
-
41
-
-
70350005395
-
"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions
-
Perales R, Bentley D, (2009) "Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions. Mol Cell 36: 178-91.
-
(2009)
Mol Cell
, vol.36
, pp. 178-191
-
-
Perales, R.1
Bentley, D.2
-
42
-
-
73649090756
-
Identification of a functional network of human epigenetic silencing factors
-
Poleshko A, Einarson MB, Shalginskikh N, Zhang R, Adams PD, et al. (2010) Identification of a functional network of human epigenetic silencing factors. J Biol Chem 285: 422-433.
-
(2010)
J Biol Chem
, vol.285
, pp. 422-433
-
-
Poleshko, A.1
Einarson, M.B.2
Shalginskikh, N.3
Zhang, R.4
Adams, P.D.5
-
43
-
-
77950865743
-
Xenopus RCOR2 (REST corepressor 2) interacts with ZMYND8, which is involved in neural differentiation
-
Zeng W, Kong Q, Li C, Mao B, (2010) Xenopus RCOR2 (REST corepressor 2) interacts with ZMYND8, which is involved in neural differentiation. Biochem Biophys Res Commun 394: 1024-1029.
-
(2010)
Biochem Biophys Res Commun
, vol.394
, pp. 1024-1029
-
-
Zeng, W.1
Kong, Q.2
Li, C.3
Mao, B.4
-
44
-
-
80052408223
-
The Hbo1-Brd1/Brpf2 complex is responsible for global acetylation of H3K14 and required for fetal liver erythropoiesis
-
Mishima Y, Miyagi S, Saraya A, Negishi M, Endoh M, et al. (2011) The Hbo1-Brd1/Brpf2 complex is responsible for global acetylation of H3K14 and required for fetal liver erythropoiesis. Blood 118: 2443-2453.
-
(2011)
Blood
, vol.118
, pp. 2443-2453
-
-
Mishima, Y.1
Miyagi, S.2
Saraya, A.3
Negishi, M.4
Endoh, M.5
-
45
-
-
0027174559
-
Identification of a new, abundant superfamily of mammalian LTR-transposons
-
Smit AF, (1993) Identification of a new, abundant superfamily of mammalian LTR-transposons. Nucleic Acids Res 21: 1863-1872.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 1863-1872
-
-
Smit, A.F.1
-
46
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, et al. (2010) Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol 28: 503-510.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
-
47
-
-
79957575162
-
Analysis of the human endogenous coregulator complexome
-
Malovannaya A, Lanz RB, Jung SY, Bulynko Y, Le NT, et al. (2011) Analysis of the human endogenous coregulator complexome. Cell 145: 787-799.
-
(2011)
Cell
, vol.145
, pp. 787-799
-
-
Malovannaya, A.1
Lanz, R.B.2
Jung, S.Y.3
Bulynko, Y.4
Le, N.T.5
-
48
-
-
79959494918
-
Structural and Histone Binding Ability Characterizations of Human PWWP Domains
-
Wu H, Zeng H, Lam R, Tempel W, Amaya MF, et al. (2011) Structural and Histone Binding Ability Characterizations of Human PWWP Domains. PLoS One 6: e18919.
-
(2011)
PLoS One
, vol.6
-
-
Wu, H.1
Zeng, H.2
Lam, R.3
Tempel, W.4
Amaya, M.F.5
-
49
-
-
4744366752
-
The PWWP domain of Dnmt3a and Dnmt3b is required for directing DNA methylation to the major satellite repeats at pericentric heterochromatin
-
Chen T, Tsujimoto N, Li E, (2004) The PWWP domain of Dnmt3a and Dnmt3b is required for directing DNA methylation to the major satellite repeats at pericentric heterochromatin. Mol Cell Biol 24: 9048-9058.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 9048-9058
-
-
Chen, T.1
Tsujimoto, N.2
Li, E.3
-
50
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker J, Rippe K, Dekker M, Kleckner N, (2002) Capturing chromosome conformation. Science 295: 1306-1311.
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
51
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
52
-
-
0037326704
-
Neural differentiation of mouse embryonic stem cells
-
Stavridis MP, Smith AG, (2003) Neural differentiation of mouse embryonic stem cells. Biochem Soc Trans 31: 45-49.
-
(2003)
Biochem Soc Trans
, vol.31
, pp. 45-49
-
-
Stavridis, M.P.1
Smith, A.G.2
-
53
-
-
0033741374
-
Gene trapping methods for the identification and functional analysis of cell surface proteins in mice
-
Skarnes WC, (2000) Gene trapping methods for the identification and functional analysis of cell surface proteins in mice. Methods Enzymol 328: 592-615.
-
(2000)
Methods Enzymol
, vol.328
, pp. 592-615
-
-
Skarnes, W.C.1
-
54
-
-
0346220073
-
Defined conditions for neural commitment and differentiation
-
Ying QL, Smith AG, (2003) Defined conditions for neural commitment and differentiation. Methods Enzymol 365: 327-41.
-
(2003)
Methods Enzymol
, vol.365
, pp. 327-341
-
-
Ying, Q.L.1
Smith, A.G.2
-
55
-
-
0037313844
-
Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture
-
Ying QL, Stavridis M, Griffiths D, Li M, Smith A, (2003) Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture. Nat Biotechnol 21: 183-6.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 183-186
-
-
Ying, Q.L.1
Stavridis, M.2
Griffiths, D.3
Li, M.4
Smith, A.5
-
56
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29: 308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
-
57
-
-
0038492517
-
A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells
-
Li Z, Van Calcar S, Qu C, Cavenee WK, Zhang MQ, et al. (2003) A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells. Proc Natl Acad Sci U S A 100: 8164-8169.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 8164-8169
-
-
Li, Z.1
van Calcar, S.2
Qu, C.3
Cavenee, W.K.4
Zhang, M.Q.5
-
58
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15: 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
-
59
-
-
17644409239
-
-
In: Nielsen R, editor, Statistical Methods in Molecular Evolution, Springer, New York. pp
-
Siepel A, Haussler D (2005) Phylogenetic Hidden Markov Models. In: Nielsen R, editor, Statistical Methods in Molecular Evolution, Springer, New York. pp 325-351.
-
(2005)
Phylogenetic Hidden Markov Models
, pp. 325-351
-
-
Siepel, A.1
Haussler, D.2
-
60
-
-
34147136507
-
Antisense inhibition of proprotein convertase subtilisin/kexin type 9 reduces serum LDL in hyperlipidemic mice
-
Graham MJ, Lemonidis KM, Whipple CP, Subramaniam A, Monia BP, et al. (2007) Antisense inhibition of proprotein convertase subtilisin/kexin type 9 reduces serum LDL in hyperlipidemic mice. J Lipid Res 48: 763-767.
-
(2007)
J Lipid Res
, vol.48
, pp. 763-767
-
-
Graham, M.J.1
Lemonidis, K.M.2
Whipple, C.P.3
Subramaniam, A.4
Monia, B.P.5
-
61
-
-
33747603960
-
The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export
-
Seidl CIM, Stricker SH, Barlow DP, (2006) The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export. EMBO J 25: 3565-3575.
-
(2006)
EMBO J
, vol.25
, pp. 3565-3575
-
-
Seidl, C.I.M.1
Stricker, S.H.2
Barlow, D.P.3
-
63
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AFA, et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14: 708-715.
-
(2004)
Genome Res
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.A.5
-
64
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin M, et al. (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458: 223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.5
|