-
1
-
-
0034734365
-
Quantum dynamics of hydride transfer in enzyme catalysis
-
Alhambra C, Corchado JC, Sanchez ML, Gao JL, Truhlar DG (2000) Quantum dynamics of hydride transfer in enzyme catalysis. J Am Chem Soc 122:8197-8203
-
(2000)
J Am Chem Soc
, vol.122
, pp. 8197-8203
-
-
Alhambra, C.1
Corchado, J.C.2
Sanchez, M.L.3
Gao, J.L.4
Truhlar, D.G.5
-
2
-
-
0346668262
-
Force mode atomic force microscopy as a tool for protein folding studies
-
Best RB, Brockwell DJ, Toca-Herrera JL, Blake AW, Smith DA, Radford SE, Clarke J (2003) Force mode atomic force microscopy as a tool for protein folding studies. Anal Chim Acta 479:87-105
-
(2003)
Anal Chim Acta
, vol.479
, pp. 87-105
-
-
Best, R.B.1
Brockwell, D.J.2
Toca-Herrera, J.L.3
Blake, A.W.4
Smith, D.A.5
Radford, S.E.6
Clarke, J.7
-
3
-
-
0034081255
-
Mechanical unfolding of a beta-hairpin using molecular dynamics
-
Bryant Z, Pande VS, Rokhsar DS (2000) Mechanical unfolding of a beta-hairpin using molecular dynamics. Biophys J 78:584-589
-
(2000)
Biophys J
, vol.78
, pp. 584-589
-
-
Bryant, Z.1
Pande, V.S.2
Rokhsar, D.S.3
-
4
-
-
0037126835
-
Photoresponsive cyclic bis(cysteinyl)peptides as catalysts of oxidative protein folding
-
Cattani-Scholz A, Renner C, Cabrele C, Behrendt R, Oesterheld D, Moroder L (2002) Photoresponsive cyclic bis(cysteinyl)peptides as catalysts of oxidative protein folding. Angew Chem Int Ed Engl 41:289-292
-
(2002)
Angew Chem Int Ed Engl
, vol.41
, pp. 289-292
-
-
Cattani-Scholz, A.1
Renner, C.2
Cabrele, C.3
Behrendt, R.4
Oesterheld, D.5
Moroder, L.6
-
5
-
-
51049096157
-
Flow-induced structural transition in the beta-switch region of glycoprotein Ib
-
Chen ZZ, Lou JZ, Zhu C, Schulten K (2008) Flow-induced structural transition in the beta-switch region of glycoprotein Ib. Biophys J 95:1303-1313
-
(2008)
Biophys J
, vol.95
, pp. 1303-1313
-
-
Chen, Z.Z.1
Lou, J.Z.2
Zhu, C.3
Schulten, K.4
-
6
-
-
78149244661
-
Temperature jump and fast photochemical oxidation probe submillisecond protein folding
-
Chen J, Rempel DL, Gross ML (2010) Temperature Jump and Fast Photochemical Oxidation Probe Submillisecond Protein Folding. J Am Chem Soc 132:15502-15504
-
(2010)
J Am Chem Soc
, vol.132
, pp. 15502-15504
-
-
Chen, J.1
Rempel, D.L.2
Gross, M.L.3
-
7
-
-
84961981091
-
Quantum and molecular dynamics study for binding of macrocyclic inhibitors to human alphathrombin
-
Cramer CJ, Truhlar DG (1999) Quantum and molecular dynamics study for binding of macrocyclic inhibitors to human alphathrombin. Chem Rev 99:2161-2200
-
(1999)
Chem Rev
, vol.99
, pp. 2161-2200
-
-
Cramer, C.J.1
Truhlar, D.G.2
-
9
-
-
66149165741
-
Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: An investigation by steered molecular dynamics simulation
-
Das A, Mukhopadhyay C (2009) Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: an investigation by steered molecular dynamics simulation. Proteins 75:1024-1034
-
(2009)
Proteins
, vol.75
, pp. 1024-1034
-
-
Das, A.1
Mukhopadhyay, C.2
-
10
-
-
8644237364
-
Understanding the key factors that control the rate of beta-hairpin folding
-
Du DG, Zhu YJ, Huang CY, Gai F (2004) Understanding the key factors that control the rate of beta-hairpin folding. Proc Natl Acad Sci USA 101:15915-15920
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15915-15920
-
-
Du, D.G.1
Zhu, Y.J.2
Huang, C.Y.3
Gai, F.4
-
11
-
-
77955586820
-
Folding of a Helix at Room Temperature Is Critically Aided by Electrostatic Polarization of Intraprotein Hydrogen Bonds
-
Duan LL, Mei Y, Zhang DW, Zhang QG, Zhang JZH (2010) Folding of a Helix at Room Temperature Is Critically Aided by Electrostatic Polarization of Intraprotein Hydrogen Bonds. J Am Chem Soc 132:11159-11164
-
(2010)
J Am Chem Soc
, vol.132
, pp. 11159-11164
-
-
Duan, L.L.1
Mei, Y.2
Zhang, D.W.3
Zhang, Q.G.4
Zhang, J.Z.H.5
-
12
-
-
3342925849
-
Methods to study protein dynamics and folding by mass spectrometry
-
Eyles SJ, Kaltashov IA (2004) Methods to study protein dynamics and folding by mass spectrometry. Methods 34:88-99
-
(2004)
Methods
, vol.34
, pp. 88-99
-
-
Eyles, S.J.1
Kaltashov, I.A.2
-
14
-
-
42449110311
-
Amide i two-dimensional infrared Spectroscopy of proteins
-
Ganim Z, Chung HS, Smith AW, DeFlores LP, Jones KC, Tokmakoff A (2008) Amide I two-dimensional infrared Spectroscopy of proteins. Acc Chem Res 41:432-441
-
(2008)
Acc Chem Res
, vol.41
, pp. 432-441
-
-
Ganim, Z.1
Chung, H.S.2
Smith, A.W.3
Deflores, L.P.4
Jones, K.C.5
Tokmakoff, A.6
-
15
-
-
0036025446
-
Quantum mechanical methods for enzyme kinetics
-
Gao JL, Truhlar DG (2002) Quantum mechanical methods for enzyme kinetics. Annu Rev Phys Chem 53:467-505
-
(2002)
Annu Rev Phys Chem
, vol.53
, pp. 467-505
-
-
Gao, J.L.1
Truhlar, D.G.2
-
16
-
-
33748584863
-
Mechanisms and free energies of enzymatic reactions
-
Gao JL, Ma SH, Major DT, Nam K, Pu JZ, Truhlar DG (2006) Mechanisms and free energies of enzymatic reactions. Chem Rev 106:3188-3209
-
(2006)
Chem Rev
, vol.106
, pp. 3188-3209
-
-
Gao, J.L.1
Ma, S.H.2
Major, D.T.3
Nam, K.4
Pu, J.Z.5
Truhlar, D.G.6
-
18
-
-
4243879778
-
Vibrational anharmonicities revealed by coherent two-dimensional infrared spectroscopy
-
Golonzka O, Khalil M, Demirdöven N, Tokmakoff A (2001) Vibrational anharmonicities revealed by coherent two-dimensional infrared spectroscopy. Phys Rev Lett 86:2154-2157
-
(2001)
Phys Rev Lett
, vol.86
, pp. 2154-2157
-
-
Golonzka, O.1
Khalil, M.2
Demirdöven, N.3
Tokmakoff, A.4
-
19
-
-
78649807441
-
Analytical biochemistry: Weighing up protein folding
-
Gruebele M (2010) Analytical biochemistry: weighing up protein folding. Nature 468:640-641
-
(2010)
Nature
, vol.468
, pp. 640-641
-
-
Gruebele, M.1
-
20
-
-
0034718550
-
How does a beta-hairpin fold/unfold? Competition between topology and heterogeneity in a solvable model
-
Guo C, Levine H, Kessler DA (2000) How does a beta-hairpin fold/unfold? Competition between topology and heterogeneity in a solvable model. Proc Natl Acad Sci USA 97:10775-10779
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10775-10779
-
-
Guo, C.1
Levine, H.2
Kessler, D.A.3
-
21
-
-
48949097510
-
Using steered molecular dynamics simulations and single-molecule force spectroscopy to guide the rational design of biomimetic modular polymeric materials
-
Guzmán DL, Roland JT, Keer H, Kong YP, Ritz T, Yee A, Guan Z (2008) Using steered molecular dynamics simulations and single-molecule force spectroscopy to guide the rational design of biomimetic modular polymeric materials. Polymer 49:3892-3901
-
(2008)
Polymer
, vol.49
, pp. 3892-3901
-
-
Guzmán, D.L.1
Roland, J.T.2
Keer, H.3
Kong, Y.P.4
Ritz, T.5
Yee, A.6
Guan, Z.7
-
22
-
-
60549116652
-
Haploinsufficiency for Pten and Serotonin transporter cooperatively influences brain size and social behavior
-
Guzmán DL, Randall A, Baldi P, Guan ZB (2009) Haploinsufficiency for Pten and Serotonin transporter cooperatively influences brain size and social behavior. Proc Natl Acad Sci USA 107:1989-1994
-
(2009)
Proc Natl Acad Sci USA
, vol.107
, pp. 1989-1994
-
-
Guzmán, D.L.1
Randall, A.2
Baldi, P.3
Guan, Z.B.4
-
23
-
-
38549146576
-
Prototyping bio-nanorobots using molecular dynamics simulation and virtual reality
-
Hamdi M, Ferreira A, Sharma G, Mavroidis C (2008) Prototyping bio-nanorobots using molecular dynamics simulation and virtual reality. Microelectron J 39:190-201
-
(2008)
Microelectron J
, vol.39
, pp. 190-201
-
-
Hamdi, M.1
Ferreira, A.2
Sharma, G.3
Mavroidis, C.4
-
24
-
-
77749344672
-
Molecular dynamics analysis of the conformations of beta-hairpin miniprotein
-
Hatfield MPD, Murphy RF, Lovas SJ (2010) Molecular dynamics analysis of the conformations of beta-hairpin miniprotein. Phys Chem B 114:3028-3037
-
(2010)
Phys Chem B
, vol.114
, pp. 3028-3037
-
-
Hatfield, M.P.D.1
Murphy, R.F.2
Lovas, S.J.3
-
25
-
-
56449088089
-
Crystal structure of a ten-amino acid protein
-
Honda S, Akiba T, Kato YS, Sawada Y, Sekijima M, Ishimura M, Ooishi A, Watanabe H, Odahara T, Harata K (2008) Crystal structure of a ten-amino acid protein. J Am Chem Soc 130:15327-15331
-
(2008)
J Am Chem Soc
, vol.130
, pp. 15327-15331
-
-
Honda, S.1
Akiba, T.2
Kato, Y.S.3
Sawada, Y.4
Sekijima, M.5
Ishimura, M.6
Ooishi, A.7
Watanabe, H.8
Odahara, T.9
Harata, K.10
-
26
-
-
57549109217
-
Modeling Differential Binding of alpha 4 beta 2 Nicotinic Acetylcholine Receptor with Agonists and Antagonists
-
Huang X-Q, Zheng F, Zhan C-G (2008) Modeling Differential Binding of alpha 4 beta 2 Nicotinic Acetylcholine Receptor with Agonists and Antagonists. J Am Chem Soc 130:16691-16696
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16691-16696
-
-
Huang, X.-Q.1
Zheng, F.2
Zhan, C.-G.3
-
27
-
-
33746608515
-
Model systems for beta-hairpins and beta-sheets
-
Hughes RM, Waters ML (2006) Model systems for beta-hairpins and beta-sheets. Curr Opin Struct Biol 16:514-524
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 514-524
-
-
Hughes, R.M.1
Waters, M.L.2
-
29
-
-
68949119703
-
2D-IR spectroscopy: Ultrafast insights into biomolecule structure and function
-
Hunt NT (2009) 2D-IR spectroscopy: ultrafast insights into biomolecule structure and function. Chem Soc Rev 38:1837-1848
-
(2009)
Chem Soc Rev
, vol.38
, pp. 1837-1848
-
-
Hunt, N.T.1
-
30
-
-
58049209744
-
Protein polarization is critical to stabilizing AF-2 and helix-2' domains in ligand binding to PPAR-gamma
-
Ji CG, Zhang JZH (2008) Protein polarization is critical to stabilizing AF-2 and helix-2' domains in ligand binding to PPAR-gamma. J Am Chem Soc 130:17129-17133
-
(2008)
J Am Chem Soc
, vol.130
, pp. 17129-17133
-
-
Ji, C.G.1
Zhang, J.Z.H.2
-
31
-
-
0037062480
-
Simulations of betahairpin folding confined to spherical pores using distributed computing
-
Klimov DK, Newfield D, Thirumalai D (2002) Simulations of betahairpin folding confined to spherical pores using distributed computing. Proc Natl Acad Sci USA 99:8019-8024
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8019-8024
-
-
Klimov, D.K.1
Newfield, D.2
Thirumalai, D.3
-
32
-
-
33751313515
-
Watching hydrogen-bond dynamics in a beta-turn by transient two-dimensional infrared spectroscopy
-
Kolano C, Helbing J, Kozinski M, Sander W, Hamm P (2006) Watching hydrogen-bond dynamics in a beta-turn by transient two-dimensional infrared spectroscopy. Nature 444:469-472
-
(2006)
Nature
, vol.444
, pp. 469-472
-
-
Kolano, C.1
Helbing, J.2
Kozinski, M.3
Sander, W.4
Hamm, P.5
-
33
-
-
77954758862
-
Betahairpin-forming peptides; Models of early stages of protein folding
-
Lewandowska A, O?dziej S, Liwo A, Scheraga HA (2010) Betahairpin-forming peptides; models of early stages of protein folding. Biophys Chem 151:1-9
-
(2010)
Biophys Chem
, vol.151
, pp. 1-9
-
-
Lewandowska, A.1
Odziej, S.2
Liwo, A.3
Scheraga, H.A.4
-
34
-
-
58149288068
-
Force-induced unfolding of human telomeric G-quadruplex: A steered molecular dynamics simulation study
-
Li H, Cao EH, Gisler T (2009) Force-induced unfolding of human telomeric G-quadruplex: a steered molecular dynamics simulation study. Biochem Biophys Res Commun 379:70-75
-
(2009)
Biochem Biophys Res Commun
, vol.379
, pp. 70-75
-
-
Li, H.1
Cao, E.H.2
Gisler, T.3
-
37
-
-
69049118095
-
Fundamental reaction mechanism and free energy profile for (-)-cocaine hydrolysis catalyzed by cocaine esterase
-
Liu J-J, Hamza A, Zhan C-G (2009) Fundamental reaction mechanism and free energy profile for (-)-cocaine hydrolysis catalyzed by cocaine esterase. J Am Chem Soc 131:11964-11975
-
(2009)
J Am Chem Soc
, vol.131
, pp. 11964-11975
-
-
Liu, J.-J.1
Hamza, A.2
Zhan, C.-G.3
-
38
-
-
0033445338
-
Steered molecular dynamics simulation of conformational changes of immunoglobulin domain I27 interpret atomic force microscopy observations
-
Lu H, Schulten K (1999) Steered molecular dynamics simulation of conformational changes of immunoglobulin domain I27 interpret atomic force microscopy observations. Chem Phys 247:141-153
-
(1999)
Chem Phys
, vol.247
, pp. 141-153
-
-
Lu, H.1
Schulten, K.2
-
39
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu H, Schulten K (2000) The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys J 79:51-65
-
(2000)
Biophys J
, vol.79
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
40
-
-
0038502170
-
Folding dynamics and mechanism of beta-hairpin formation
-
Munoz V, Thompson PA, Hofrichter J, Eaton WA (1997) Folding dynamics and mechanism of beta-hairpin formation. Nature 390:196-199
-
(1997)
Nature
, vol.390
, pp. 196-199
-
-
Munoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
41
-
-
33745027667
-
Folding and aggregation kinetics of a beta-hairpin
-
Munoz V, Ghirlando R, Blanco FJ, Jas GS, Hofrichter J, Eaton WA (2006) Folding and aggregation kinetics of a beta-hairpin. Biochemistry 45:7023-7035
-
(2006)
Biochemistry
, vol.45
, pp. 7023-7035
-
-
Munoz, V.1
Ghirlando, R.2
Blanco, F.J.3
Jas, G.S.4
Hofrichter, J.5
Eaton, W.A.6
-
42
-
-
33645387985
-
Nonequilibrium molecular dynamics simulation of a photoswitchable peptide
-
Nguyen PH, Stock G (2006) Nonequilibrium molecular dynamics simulation of a photoswitchable peptide. Chem Phys 323:36-44
-
(2006)
Chem Phys
, vol.323
, pp. 36-44
-
-
Nguyen, P.H.1
Stock, G.2
-
43
-
-
33847320616
-
Radiationless decay of red fluorescent protein chromophore models via twisted intramolecular chargetransfer states
-
Olsen S, Smith SC (2007) Radiationless decay of red fluorescent protein chromophore models via twisted intramolecular chargetransfer states. J Am Chem Soc 129:2054-2065
-
(2007)
J Am Chem Soc
, vol.129
, pp. 2054-2065
-
-
Olsen, S.1
Smith, S.C.2
-
44
-
-
46949088950
-
Bond selection in the photoisomerization reaction of anionic green fluorescent protein and kindling fluorescent protein chromophore models
-
Olsen S, Smith SC (2008) Bond selection in the photoisomerization reaction of anionic green fluorescent protein and kindling fluorescent protein chromophore models. JAmChem Soc 130:8677-8689
-
(2008)
JAmChem Soc
, vol.130
, pp. 8677-8689
-
-
Olsen, S.1
Smith, S.C.2
-
45
-
-
77958068942
-
Characterizing short-lived protein folding intermediates by top-down hydrogen exchange mass spectrometry
-
Pan JX, Han J, Borchers CH, Konermann L (2010) Characterizing Short-Lived Protein Folding Intermediates by Top-Down Hydrogen Exchange Mass Spectrometry. Anal Chem 82:8591-8597
-
(2010)
Anal Chem
, vol.82
, pp. 8591-8597
-
-
Pan, J.X.1
Han, J.2
Borchers, C.H.3
Konermann, L.4
-
46
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, Schulten KJ (2005) Scalable molecular dynamics with NAMD. Comput Chem 25:1781-1802
-
(2005)
Comput Chem
, vol.25
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.J.10
-
47
-
-
34548638679
-
Ligand binding and protein dynamics in lactate dehydrogenase
-
Pineda JR, Callender R, Schwartz SD (2007) Ligand binding and protein dynamics in lactate dehydrogenase. Biophys J 93:1474-1483
-
(2007)
Biophys J
, vol.93
, pp. 1474-1483
-
-
Pineda, J.R.1
Callender, R.2
Schwartz, S.D.3
-
48
-
-
0034578592
-
Photomodulation of conformational states. I. Mono-and bicyclic peptides with (4-amino)phenylazobenzoic acid as backbone constituent
-
Renner C, Behrendt R, Spörlein S, Wachtveitl J, Moroder L (2000a) Photomodulation of conformational states. I. Mono-and bicyclic peptides with (4-amino)phenylazobenzoic acid as backbone constituent. Biopolymers 54:489-500
-
(2000)
Biopolymers
, vol.54
, pp. 489-500
-
-
Renner, C.1
Behrendt, R.2
Spörlein, S.3
Wachtveitl, J.4
Moroder, L.5
-
49
-
-
0034578637
-
Photomodulation of conformational states II Mono-and bicyclic peptides with (4-aminomethyl)phenylazobenzoic acid as backbone constituent
-
Renner C, Cramer J, Behrendt R, Moroder L (2000b) Photomodulation of conformational states. II. Mono-and bicyclic peptides with (4-aminomethyl) phenylazobenzoic acid as backbone constituent. Biopolymers 54:501-514
-
(2000)
Biopolymers
, vol.54
, pp. 501-514
-
-
Renner, C.1
Cramer, J.2
Behrendt, R.3
Moroder, L.4
-
50
-
-
2342448436
-
Simulations of the role of water in the protein-folding mechanism
-
Rhee YM, Sorin EJ, Jayachandran G, Lindahl E, Pande VS (2004) Simulations of the role of water in the protein-folding mechanism. Proc Natl Acad Sci USA 101:6456-6461
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6456-6461
-
-
Rhee, Y.M.1
Sorin, E.J.2
Jayachandran, G.3
Lindahl, E.4
Pande, V.S.5
-
51
-
-
0031042739
-
Single molecule force spectroscopy on polysaccharides by atomic force microscopy
-
Rief M, Oesterhelt F, Heymann B, Gaub HE (1997) Single molecule force spectroscopy on polysaccharides by atomic force microscopy. Science 275:1295-1297
-
(1997)
Science
, vol.275
, pp. 1295-1297
-
-
Rief, M.1
Oesterhelt, F.2
Heymann, B.3
Gaub, H.E.4
-
52
-
-
77954251404
-
Dueling post-translational modifications trigger folding and unfolding of a beta-hairpin peptide
-
Riemen AJ, Waters ML (2010) Dueling post-translational modifications trigger folding and unfolding of a beta-hairpin peptide. J Am Chem Soc 132:9007-9013
-
(2010)
J Am Chem Soc
, vol.132
, pp. 9007-9013
-
-
Riemen, A.J.1
Waters, M.L.2
-
53
-
-
43849102169
-
Remote mutations and active site dynamics correlate with catalytic properties of purine nucleoside phosphorylase
-
Saen-Oon S, Ghanem M, Schramm VL, Schwartz SD (2008) Remote mutations and active site dynamics correlate with catalytic properties of purine nucleoside phosphorylase. Biophys J 94:4078-4088
-
(2008)
Biophys J
, vol.94
, pp. 4078-4088
-
-
Saen-Oon, S.1
Ghanem, M.2
Schramm, V.L.3
Schwartz, S.D.4
-
54
-
-
0347987853
-
Folding proteins in fatal ways
-
Selkoe DJ (2003) Folding proteins in fatal ways. Nature 426:900-904
-
(2003)
Nature
, vol.426
, pp. 900-904
-
-
Selkoe, D.J.1
-
55
-
-
77953231020
-
The folding cooperativity of a protein is controlled by its chain topology
-
Shank EA, Cecconi C, Dill JW, Marqusee S, Bustamante C (2010) The folding cooperativity of a protein is controlled by its chain topology. Nature 465:637-641
-
(2010)
Nature
, vol.465
, pp. 637-641
-
-
Shank, E.A.1
Cecconi, C.2
Dill, J.W.3
Marqusee, S.4
Bustamante, C.5
-
56
-
-
0030939178
-
Protein structure in vacuo: Gas-phase confirmations of BPTI and cytochrome c
-
Shelimov KB, Clemmer DE, Hudgins RR, Jarrold MF (1997) Protein structure in vacuo: gas-phase confirmations of BPTI and cytochrome c. J Am Chem Soc 119:2240-2248
-
(1997)
J Am Chem Soc
, vol.119
, pp. 2240-2248
-
-
Shelimov, K.B.1
Clemmer, D.E.2
Hudgins, R.R.3
Jarrold, M.F.4
-
57
-
-
34249930159
-
Single-molecule experiments in vitro and in silico
-
Sotomayor M, Schulten K (2007) Single-molecule experiments in vitro and in silico. Science 316:1144-1148
-
(2007)
Science
, vol.316
, pp. 1144-1148
-
-
Sotomayor, M.1
Schulten, K.2
-
58
-
-
0037062505
-
Ultrafast spectroscopy reveals subnanosecond peptide conformational dynamics and validates molecular dynamics simulation
-
Spörlein S, Carstens H, Satzger H, Renner C, Behrendt R, Moroder L, Tavan P, Zinth W, Josef W (2002) Ultrafast spectroscopy reveals subnanosecond peptide conformational dynamics and validates molecular dynamics simulation. Proc Natl Acad Sci USA 99:7998-8002
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7998-8002
-
-
Spörlein, S.1
Carstens, H.2
Satzger, H.3
Renner, C.4
Behrendt, R.5
Moroder, L.6
Tavan, P.7
Zinth, W.8
Josef, W.9
-
59
-
-
0032901420
-
Quench-flow experiments combined with mass spectrometry show apomyoglobin folds through an obligatory intermediate
-
Tsui V, Garcia C, Cavagnero S, Siuzdak G, Dyson HJ, Wright PE (1999) Quench-flow experiments combined with mass spectrometry show apomyoglobin folds through an obligatory intermediate. Protein Sci 8:45-49
-
(1999)
Protein Sci
, vol.8
, pp. 45-49
-
-
Tsui, V.1
Garcia, C.2
Cavagnero, S.3
Siuzdak, G.4
Dyson, H.J.5
Wright, P.E.6
-
60
-
-
34250337807
-
Photochemistry of aryl halides: Photodissociation dynamics
-
Wu EL, Mei Y, Han KL, Zhang JZH (2007) Photochemistry of aryl halides: photodissociation dynamics. Biophys J 92:4244-4253
-
(2007)
Biophys J
, vol.92
, pp. 4244-4253
-
-
Wu, E.L.1
Mei, Y.2
Han, K.L.3
Zhang, J.Z.H.4
-
61
-
-
77955839666
-
Molecular dynamics simulation of SRP GTPases: Towards an understanding of the complex formation from equilibrium fluctuations
-
Yang MJ, Zhang X, Han KL (2010) Molecular dynamics simulation of SRP GTPases: towards an understanding of the complex formation from equilibrium fluctuations. Proteins Struct Funct Bioinform 78:2222-2237
-
(2010)
Proteins Struct Funct Bioinform
, vol.78
, pp. 2222-2237
-
-
Yang, M.J.1
Zhang, X.2
Han, K.L.3
-
62
-
-
78649905953
-
Molecular dynamics simulation reveals preorganization of the chloroplast FtsY towards complex formation induced by GTP binding
-
Yang MJ, Pang XQ, Zhang X, Han KLJ (2011) Molecular dynamics simulation reveals preorganization of the chloroplast FtsY towards complex formation induced by GTP binding. Struct Biol 173:57-66
-
(2011)
Struct Biol
, vol.173
, pp. 57-66
-
-
Yang, M.J.1
Pang, X.Q.2
Zhang, X.3
Han, K.L.J.4
-
63
-
-
77249161667
-
Equilibrium sampling for biomolecules under mechanical tension
-
Zeng XC, Hu H, Zhou HX, Marszalek PE, Yang WT (2010) Equilibrium sampling for biomolecules under mechanical tension. Biophys J 98:733-740
-
(2010)
Biophys J
, vol.98
, pp. 733-740
-
-
Zeng, X.C.1
Hu, H.2
Zhou, H.X.3
Marszalek, P.E.4
Yang, W.T.5
-
64
-
-
74849140347
-
Subnanomolar Inhibitor of cytochrome bc(1) complex designed by optimizing interaction with conformationally flexible residues
-
Zhao P-L, Wang L, Zhu X-L, Huang X-Q, Zhan C-G, Wu J-W, Yang G-F (2010) Subnanomolar Inhibitor of cytochrome bc(1) complex designed by optimizing interaction with conformationally flexible residues. J Am Chem Soc 132:185-194
-
(2010)
J Am Chem Soc
, vol.132
, pp. 185-194
-
-
Zhao, P.-L.1
Wang, L.2
Zhu, X.-L.3
Huang, X.-Q.4
Zhan, C.-G.5
Wu, J.-W.6
Yang, G.-F.7
-
65
-
-
0036789950
-
Can a continuum solvent model reproduce the free energy landscape of a beta-hairpin folding in water?
-
Zhou RH, Berne BJ (2002) Can a continuum solvent model reproduce the free energy landscape of a beta-hairpin folding in water? Proc Natl Acad Sci USA 99:12777-12782
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12777-12782
-
-
Zhou, R.H.1
Berne, B.J.2
-
66
-
-
0031022024
-
Two-state models of protein folding kinetics
-
Zwanzig R (1997) Two-state models of protein folding kinetics. Proc Natl Acad Sci USA 94:148-150
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 148-150
-
-
Zwanzig, R.1
|