Watching hydrogen-bond dynamics in a β-turn by transient two-dimensional infrared spectroscopy

Nature

Volumn 444, Issue 7118, 2006, Pages 469-472

  Kolano, Christoph ^a   Helbing, Jan ^a   Kozinski, Mariusz ^a   Sander, Wolfram ^b   Hamm, Peter ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMATERIALS; INFRARED SPECTROSCOPY; NUCLEAR MAGNETIC RESONANCE; TRANSIENTS; X RAY CRYSTALLOGRAPHY;

BIOMOLECULAR FUNCTION; INTRAMOLECULAR; TRANSIENT MOLECULAR INTERACTIONS; VIBRATIONAL COUPLING;

HYDROGEN BONDS;

CARBON MONOXIDE; MYOGLOBIN; PEPTIDE;

CARBON MONOXIDE; CHEMICAL BONDING; HYDROGEN; INFRARED SPECTROSCOPY; ORIENTATION; PEPTIDE; PHOTOLYSIS;

ARTICLE; BETA SHEET; CHEMICAL STRUCTURE; CONFORMATIONAL TRANSITION; DISSOCIATION; HYDROGEN BOND; INFRARED SPECTROSCOPY; MOLECULAR INTERACTION; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN FOLDING; X RAY CRYSTALLOGRAPHY;

EID: 33751313515     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature05352     Document Type: Article

References (28)

1. Schotte, F. et al. Watching a protein as it functions with 150-ps time-resolved X-ray crystallography. Science 300, 1944-1947 (2003).
2. 18O isotopomers of alanine residues in an α-helix. J. Phys. Chem. B 109, 18652-18663 (2005).
3. Wang, J., Chen, J. & Hochstrasser, R. M. Local structure of β-hairpin isotopomers by FTIR, 2D IR, and ab initio theory. J. Phys. Chem. B 110, 7545-7555 (2006).
4. Asbury, J. B. et al. Hydrogen bond dynamics probed with ultrafast infrared heterodyne-detected multidimensional vibrational stimulated echoes. Phys. Rev. Lett. 91, 237402 (2003).
5. Mukamel, S. Multidimensional femtosecond correlation spectroscopies of electronic and vibrational excitations. Annu. Rev. Phys. Chem. 51, 691-729 (2000).
6. Mukherjee, P., Kass, I., Arkin, I. & Zanni, M. T. Picosecond dynamics of a membrane protein revealed by 2D IR. Proc. Natl Acad. Sci. USA 103, 3528-3533 (2006).
7. Golonzka, O., Khalil, M., Demirdoven, N. & Tokmakoff, A. Vibrational anharmonicities revealed by coherent two-dimensional infrared spectroscopy. Phys. Rev. Lett. 86, 2154-2157 (2001).
8. 2O. Nature 434, 199-202 (2005).
9. Hamm, P., Lim, M. & Hochstrasser, R. M. Structure of the amide I band of peptides measured by femtosecond nonlinear-infrared spectroscopy. J. Phys. Chem. B 102, 6123-6138 (1998).
10. Woutersen, S. & Hamm, P. Structure determination of trialanine in water using polarization sensitive two-dimensional vibrational spectroscopy. J. Phys. Chem. B 104, 11316-11320 (2000).
11. Woutersen, S. & Hamm, P. Nonlinear two-dimensional vibrational spectroscopy of peptides. J. Phys. Condens. Matter 14, R1035-R1062 (2002).
12. Bredenbeck, J. et al. Transient 2D-IR spectroscopy: snapshots of the nonequilibrium ensemble during the picosecond conformational transition of a small peptide. J. Phys. Chem. B 107, 8654-8660 (2003).
13. Bredenbeck, J., Helbing, J. & Hamm, P. Transient two-dimensional infrared spectroscopy: exploring the polarization dependence. J. Chem. Phys. 121, 5943-5957 (2004).
14. Bieri, O. et al. The speed limit for protein folding measured by triplet-triplet energy transfer. Proc. Natl Acad. Sci. USA 96, 9597-9601 (1999).
15. Kolano, C., Gomann, K. & Sander, W. Small cyclic disulfide peptides: Synthesis in preparative amounts and characterization by means of NMR and FT-IR spectroscopy. Eur. J. Org. Chem. 20, 4167-4176 (2004).
16. Volk, M. et al. Peptide conformational dynamics and vibrational stark effects following photoinitiated disulfide cleavage. J. Phys. Chem. B 101, 8607-8616 (1997).
17. Lu, H. S. M. et al. Aminothiotyrosine disulfide, an optical trigger for initiation of protein folding. J. Am. Chem. Soc. 119, 7173-7180 (1997).
18. Bredenbeck, J. et al. Picosecond conformational transition and equilibration of a cyclic peptide. Proc. Natl Acad. Sci. USA 100, 6452-6457 (2003).
19. Bredenbeck, J., Helbing, J., Kumita, J. R., Woolley, G. A. & Hamm, P. α-Helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy. Proc. Natl Acad. Sci. USA 102, 2379-2384 (2005).
20. Hamm, P., Ohline, S. M. & Zinth, W. Vibrational cooling after ultrafast photoisomerization of azobenzene measured by femtosecond infrared spectroscopy. J. Chem. Phys. 106, 519-529 (1997).
21. Pimentel, G. C. & McClellan, A. L. The Hydrogen Bond 67-141 (W. H. Freeman, San Francisco, 1960).
22. Nguyen, P. H., Gorbunov, R. D. & Stock, G. Photoinduced conformational dynamics of a photoswitchable peptide: a nonequilibrium molecular dynamics simulation study. Biophys. J. 91, 1224-1234 (2006).
23. Mohanty, D., Elber, R., Thirumalai, D., Beglov, D. & Roux, B. Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water. J. Mol. Biol. 272, 423-442 (1997).
24. Mohanty, D., Elber, R. & Thirumalai, D. Probing the role of local propensity in peptide turn formation. Int. J. Quantum Chem. 80, 1125-1128 (2000).
25. Kubelka, J., Hofrichter, J. & Eaton, W. A. The protein folding 'speed limit'. Curr. Opin. Struct. Biol. 14, 76-88 (2004).
26. Sadqi, M., Fushman, D. & Munoz, V. Atom-by-atom analysis of global downhill protein folding. Nature 442, 317-321 (2006).
27. Yang, W. Y. & Gruebele, M. Folding at the speed limit. Nature 423, 193-197 (2003).
28. Satzger, H. et al. Picosecond dynamics in water-soluble azobenzene-peptides. Chem. Phys. Lett. 396, 191-197 (2004).