-
1
-
-
0033229970
-
The economics of ribosome biosynthesis in yeast
-
Warner JR, (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem Sci 24: 437-440.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 437-440
-
-
Warner, J.R.1
-
2
-
-
34250377197
-
The weird and wonderful world of bacterial ribosome regulation
-
Wilson DN, Nierhaus KH, (2007) The weird and wonderful world of bacterial ribosome regulation. Crit Rev Biochem Mol Biol 42: 187-219.
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 187-219
-
-
Wilson, D.N.1
Nierhaus, K.H.2
-
3
-
-
0014693477
-
Structure and Function of Escherichia Coli Ribosomes. 6. Mechanism of Assembly of 30-S Ribosomes Studied in Vitro
-
Traub P, Nomura M, (1969) Structure and Function of Escherichia Coli Ribosomes. 6. Mechanism of Assembly of 30-S Ribosomes Studied in Vitro. J Mol Biol 40: 391-&.
-
(1969)
J Mol Biol
, vol.40
, pp. 391
-
-
Traub, P.1
Nomura, M.2
-
4
-
-
0014266752
-
Structure and function of E. coli ribosomes. V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins
-
Traub P, Nomura M, (1968) Structure and function of E. coli ribosomes. V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins. Proc Natl Acad Sci U S A 59: 777-784.
-
(1968)
Proc Natl Acad Sci U S A
, vol.59
, pp. 777-784
-
-
Traub, P.1
Nomura, M.2
-
5
-
-
0014432916
-
Structure and function of Escherichia coli ribosomes. 3. Stoichiometry and rate of the reconstitution of ribosomes from subribosomal particles and split proteins
-
Nomura M, Traub P, (1968) Structure and function of Escherichia coli ribosomes. 3. Stoichiometry and rate of the reconstitution of ribosomes from subribosomal particles and split proteins. J Mol Biol 34: 609-619.
-
(1968)
J Mol Biol
, vol.34
, pp. 609-619
-
-
Nomura, M.1
Traub, P.2
-
6
-
-
0037319895
-
Assembly of the 30S ribosomal subunit
-
Culver GM, (2003) Assembly of the 30S ribosomal subunit. Biopolymers 68: 234-249.
-
(2003)
Biopolymers
, vol.68
, pp. 234-249
-
-
Culver, G.M.1
-
7
-
-
0016153699
-
Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies
-
Held WA, Ballou B, Mizushima S, Nomura M, (1974) Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies. J Biol Chem 249: 3103-3111.
-
(1974)
J Biol Chem
, vol.249
, pp. 3103-3111
-
-
Held, W.A.1
Ballou, B.2
Mizushima, S.3
Nomura, M.4
-
8
-
-
0027171312
-
Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits
-
Powers T, Daubresse G, Noller HF, (1993) Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits. J Mol Biol 232: 362-374.
-
(1993)
J Mol Biol
, vol.232
, pp. 362-374
-
-
Powers, T.1
Daubresse, G.2
Noller, H.F.3
-
9
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A resolution
-
Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, et al. (2005) Structures of the bacterial ribosome at 3.5 A resolution. Science 310: 827-834.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
-
10
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, et al. (2000) Structure of the 30S ribosomal subunit. Nature 407: 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
-
11
-
-
0032549780
-
RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting
-
Sclavi B, Sullivan M, Chance MR, Brenowitz M, Woodson SA, (1998) RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science 279: 1940-1943.
-
(1998)
Science
, vol.279
, pp. 1940-1943
-
-
Sclavi, B.1
Sullivan, M.2
Chance, M.R.3
Brenowitz, M.4
Woodson, S.A.5
-
12
-
-
22544466402
-
Protein-independent folding pathway of the 16S rRNA 5′ domain
-
Adilakshmi T, Ramaswamy P, Woodson SA, (2005) Protein-independent folding pathway of the 16S rRNA 5′ domain. J Mol Biol 351: 508-519.
-
(2005)
J Mol Biol
, vol.351
, pp. 508-519
-
-
Adilakshmi, T.1
Ramaswamy, P.2
Woodson, S.A.3
-
13
-
-
0029286628
-
Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA
-
Powers T, Noller HF, (1995) Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA. RNA 1: 194-209.
-
(1995)
RNA
, vol.1
, pp. 194-209
-
-
Powers, T.1
Noller, H.F.2
-
14
-
-
38049055218
-
Assembly of the 5′ and 3′ minor domains of 16S ribosomal RNA as monitored by tethered probing from ribosomal protein S20
-
Dutca LM, Culver GM, (2008) Assembly of the 5′ and 3′ minor domains of 16S ribosomal RNA as monitored by tethered probing from ribosomal protein S20. J Mol Biol 376: 92-108.
-
(2008)
J Mol Biol
, vol.376
, pp. 92-108
-
-
Dutca, L.M.1
Culver, G.M.2
-
15
-
-
0033655152
-
Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes
-
Culver GM, Noller HF, (2000) Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods Enzymol 318: 461-475.
-
(2000)
Methods Enzymol
, vol.318
, pp. 461-475
-
-
Culver, G.M.1
Noller, H.F.2
-
16
-
-
28444479853
-
An assembly landscape for the 30S ribosomal subunit
-
Talkington MW, Siuzdak G, Williamson JR, (2005) An assembly landscape for the 30S ribosomal subunit. Nature 438: 628-632.
-
(2005)
Nature
, vol.438
, pp. 628-632
-
-
Talkington, M.W.1
Siuzdak, G.2
Williamson, J.R.3
-
17
-
-
55249084867
-
Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly
-
Adilakshmi T, Bellur DL, Woodson SA, (2008) Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly. Nature 455: 1268-1272.
-
(2008)
Nature
, vol.455
, pp. 1268-1272
-
-
Adilakshmi, T.1
Bellur, D.L.2
Woodson, S.A.3
-
19
-
-
27644502679
-
Simulating movement of tRNA into the ribosome during decoding
-
Sanbonmatsu KY, Joseph S, Tung CS, (2005) Simulating movement of tRNA into the ribosome during decoding. Proc Natl Acad Sci U S A 102: 15854-15859.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15854-15859
-
-
Sanbonmatsu, K.Y.1
Joseph, S.2
Tung, C.S.3
-
20
-
-
77952717308
-
Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways
-
Whitford PC, Geggier P, Altman RB, Blanchard SC, Onuchic JN, et al. (2010) Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways. RNA 16: 1196-1204.
-
(2010)
RNA
, vol.16
, pp. 1196-1204
-
-
Whitford, P.C.1
Geggier, P.2
Altman, R.B.3
Blanchard, S.C.4
Onuchic, J.N.5
-
21
-
-
77957159348
-
Connecting energy landscapes with experimental rates for aminoacyl-tRNA accommodation in the ribosome
-
Whitford PC, Onuchic JN, Sanbonmatsu KY, (2010) Connecting energy landscapes with experimental rates for aminoacyl-tRNA accommodation in the ribosome. J Am Chem Soc 132: 13170-13171.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 13170-13171
-
-
Whitford, P.C.1
Onuchic, J.N.2
Sanbonmatsu, K.Y.3
-
22
-
-
77956935085
-
The role of L1 stalk-tRNA interaction in the ribosome elongation cycle
-
Trabuco LG, Schreiner E, Eargle J, Cornish P, Ha T, et al. (2010) The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. J Mol Biol 402: 741-760.
-
(2010)
J Mol Biol
, vol.402
, pp. 741-760
-
-
Trabuco, L.G.1
Schreiner, E.2
Eargle, J.3
Cornish, P.4
Ha, T.5
-
23
-
-
0037453255
-
Understanding discrimination by the ribosome: stability testing and groove measurement of codon-anticodon pairs
-
Sanbonmatsu KY, Joseph S, (2003) Understanding discrimination by the ribosome: stability testing and groove measurement of codon-anticodon pairs. J Mol Biol 328: 33-47.
-
(2003)
J Mol Biol
, vol.328
, pp. 33-47
-
-
Sanbonmatsu, K.Y.1
Joseph, S.2
-
24
-
-
33846039881
-
Energetics of codon-anticodon recognition on the small ribosomal subunit
-
Almlof M, Ander M, Aqvist J, (2007) Energetics of codon-anticodon recognition on the small ribosomal subunit. Biochemistry 46: 200-209.
-
(2007)
Biochemistry
, vol.46
, pp. 200-209
-
-
Almlof, M.1
Ander, M.2
Aqvist, J.3
-
25
-
-
58149310718
-
The ribosome structure controls and directs mRNA entry, translocation and exit dynamics
-
Kurkcuoglu O, Doruker P, Sen TZ, Kloczkowski A, Jernigan RL, (2008) The ribosome structure controls and directs mRNA entry, translocation and exit dynamics. Phys Biol 5: 046005.
-
(2008)
Phys Biol
, vol.5
, pp. 046005
-
-
Kurkcuoglu, O.1
Doruker, P.2
Sen, T.Z.3
Kloczkowski, A.4
Jernigan, R.L.5
-
26
-
-
77952589053
-
Recognition of the regulatory nascent chain TnaC by the ribosome
-
Trabuco LG, Harrison CB, Schreiner E, Schulten K, (2010) Recognition of the regulatory nascent chain TnaC by the ribosome. Structure 18: 627-637.
-
(2010)
Structure
, vol.18
, pp. 627-637
-
-
Trabuco, L.G.1
Harrison, C.B.2
Schreiner, E.3
Schulten, K.4
-
27
-
-
70350738240
-
Regulation of the protein-conducting channel by a bound ribosome
-
Gumbart J, Trabuco LG, Schreiner E, Villa E, Schulten K, (2009) Regulation of the protein-conducting channel by a bound ribosome. Structure 17: 1453-1464.
-
(2009)
Structure
, vol.17
, pp. 1453-1464
-
-
Gumbart, J.1
Trabuco, L.G.2
Schreiner, E.3
Villa, E.4
Schulten, K.5
-
28
-
-
33747873906
-
Energy landscape of the ribosomal decoding center
-
Sanbonmatsu KY, (2006) Energy landscape of the ribosomal decoding center. Biochimie 88: 1053-1059.
-
(2006)
Biochimie
, vol.88
, pp. 1053-1059
-
-
Sanbonmatsu, K.Y.1
-
29
-
-
33747880625
-
A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns
-
Vaiana AC, Westhof E, Auffinger P, (2006) A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns. Biochimie 88: 1061-1073.
-
(2006)
Biochimie
, vol.88
, pp. 1061-1073
-
-
Vaiana, A.C.1
Westhof, E.2
Auffinger, P.3
-
30
-
-
57449090256
-
Molecular dynamics study of the ribosomal A-site
-
Romanowska J, Setny P, Trylska J, (2008) Molecular dynamics study of the ribosomal A-site. J Phys Chem B 112: 15227-15243.
-
(2008)
J Phys Chem B
, vol.112
, pp. 15227-15243
-
-
Romanowska, J.1
Setny, P.2
Trylska, J.3
-
31
-
-
59849110790
-
Stochastic gating and drug-ribosome interactions
-
Vaiana AC, Sanbonmatsu KY, (2009) Stochastic gating and drug-ribosome interactions. J Mol Biol 386: 648-661.
-
(2009)
J Mol Biol
, vol.386
, pp. 648-661
-
-
Vaiana, A.C.1
Sanbonmatsu, K.Y.2
-
32
-
-
78649888301
-
A combined molecular dynamics and rapid kinetics approach to identify conserved three-dimensional communication networks in elongation factor Tu
-
Wieden HJ, Mercier E, Gray J, Steed B, Yawney D, (2010) A combined molecular dynamics and rapid kinetics approach to identify conserved three-dimensional communication networks in elongation factor Tu. Biophys J 99: 3735-3743.
-
(2010)
Biophys J
, vol.99
, pp. 3735-3743
-
-
Wieden, H.J.1
Mercier, E.2
Gray, J.3
Steed, B.4
Yawney, D.5
-
33
-
-
79959935915
-
Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome
-
Adamczyk AJ, Warshel A, (2011) Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome. Proc Natl Acad Sci U S A 108: 9827-9832.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 9827-9832
-
-
Adamczyk, A.J.1
Warshel, A.2
-
34
-
-
24644461086
-
Mechanism of peptide bond synthesis on the ribosome
-
Trobro S, Aqvist J, (2005) Mechanism of peptide bond synthesis on the ribosome. Proc Natl Acad Sci U S A 102: 12395-12400.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12395-12400
-
-
Trobro, S.1
Aqvist, J.2
-
35
-
-
23944472625
-
What are the roles of substrate-assisted catalysis and proximity effects in peptide bond formation by the ribosome?
-
Sharma PK, Xiang Y, Kato M, Warshel A, (2005) What are the roles of substrate-assisted catalysis and proximity effects in peptide bond formation by the ribosome? Biochemistry 44: 11307-11314.
-
(2005)
Biochemistry
, vol.44
, pp. 11307-11314
-
-
Sharma, P.K.1
Xiang, Y.2
Kato, M.3
Warshel, A.4
-
36
-
-
0033784534
-
Induced fit in RNA-protein recognition
-
Williamson JR, (2000) Induced fit in RNA-protein recognition. Nat Struct Biol 7: 834-837.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
37
-
-
0032102374
-
Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome
-
Ramakrishnan V, White SW, (1998) Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome. Trends Biochem Sci 23: 208-212.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 208-212
-
-
Ramakrishnan, V.1
White, S.W.2
-
38
-
-
0037453294
-
A structural model for the assembly of the 30S subunit of the ribosome
-
Stagg SM, Mears JA, Harvey SC, (2003) A structural model for the assembly of the 30S subunit of the ribosome. J Mol Biol 328: 49-61.
-
(2003)
J Mol Biol
, vol.328
, pp. 49-61
-
-
Stagg, S.M.1
Mears, J.A.2
Harvey, S.C.3
-
39
-
-
23744516552
-
Exploring assembly energetics of the 30S ribosomal subunit using an implicit solvent approach
-
Trylska J, McCammon JA, Brooks CL Iii, (2005) Exploring assembly energetics of the 30S ribosomal subunit using an implicit solvent approach. J Am Chem Soc 127: 11125-11133.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 11125-11133
-
-
Trylska, J.1
McCammon, J.A.2
Brooks Iii., C.L.3
-
40
-
-
4344685227
-
Global ribosome motions revealed with elastic network model
-
Wang Y, Rader AJ, Bahar I, Jernigan RL, (2004) Global ribosome motions revealed with elastic network model. J Struct Biol 147: 302-314.
-
(2004)
J Struct Biol
, vol.147
, pp. 302-314
-
-
Wang, Y.1
Rader, A.J.2
Bahar, I.3
Jernigan, R.L.4
-
41
-
-
24144478280
-
Exploring global motions and correlations in the ribosome
-
Trylska J, Tozzini V, McCammon JA, (2005) Exploring global motions and correlations in the ribosome. Biophys J 89: 1455-1463.
-
(2005)
Biophys J
, vol.89
, pp. 1455-1463
-
-
Trylska, J.1
Tozzini, V.2
McCammon, J.A.3
-
42
-
-
0042424707
-
Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy
-
Tama F, Valle M, Frank J, Brooks CL 3rd, (2003) Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proc Natl Acad Sci U S A 100: 9319-9323.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9319-9323
-
-
Tama, F.1
Valle, M.2
Frank, J.3
Brooks 3rd, C.L.4
-
43
-
-
66149167201
-
Collective dynamics of the ribosomal tunnel revealed by elastic network modeling
-
Kurkcuoglu O, Kurkcuoglu Z, Doruker P, Jernigan RL, (2009) Collective dynamics of the ribosomal tunnel revealed by elastic network modeling. Proteins 75: 837-845.
-
(2009)
Proteins
, vol.75
, pp. 837-845
-
-
Kurkcuoglu, O.1
Kurkcuoglu, Z.2
Doruker, P.3
Jernigan, R.L.4
-
45
-
-
58149157892
-
Effects of protein subunits removal on the computed motions of partial 30S structures of the ribosome
-
Yan A, Wang Y, Kloczkowski A, Jernigan RL, (2008) Effects of protein subunits removal on the computed motions of partial 30S structures of the ribosome. J Chem Theory Comput 4: 1757-1767.
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 1757-1767
-
-
Yan, A.1
Wang, Y.2
Kloczkowski, A.3
Jernigan, R.L.4
-
46
-
-
2942615089
-
The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit
-
Klein DJ, Moore PB, Steitz TA, (2004) The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit. J Mol Biol 340: 141-177.
-
(2004)
J Mol Biol
, vol.340
, pp. 141-177
-
-
Klein, D.J.1
Moore, P.B.2
Steitz, T.A.3
-
47
-
-
0035964342
-
Electrostatics of nanosystems: application to microtubules and the ribosome
-
Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA, (2001) Electrostatics of nanosystems: application to microtubules and the ribosome. Proc Natl Acad Sci U S A 98: 10037-10041.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
48
-
-
0034615759
-
Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain
-
Agalarov SC, Sridhar Prasad G, Funke PM, Stout CD, Williamson JR, (2000) Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain. Science 288: 107-113.
-
(2000)
Science
, vol.288
, pp. 107-113
-
-
Agalarov, S.C.1
Sridhar Prasad, G.2
Funke, P.M.3
Stout, C.D.4
Williamson, J.R.5
-
49
-
-
0035850733
-
Central domain assembly: Thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex
-
Recht MI, Williamson JR, (2001) Central domain assembly: Thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex. J Mol Biol 313: 35-48.
-
(2001)
J Mol Biol
, vol.313
, pp. 35-48
-
-
Recht, M.I.1
Williamson, J.R.2
-
50
-
-
0042063940
-
Affinity of ribosomal protein S8 from mesophilic and (hyper)thermophilic archaea and bacteria for 16S rRNA correlates with the growth temperatures of the organisms
-
Gruber T, Kohrer C, Lung B, Shcherbakov D, Piendl W, (2003) Affinity of ribosomal protein S8 from mesophilic and (hyper)thermophilic archaea and bacteria for 16S rRNA correlates with the growth temperatures of the organisms. FEBS Lett 549: 123-128.
-
(2003)
FEBS Lett
, vol.549
, pp. 123-128
-
-
Gruber, T.1
Kohrer, C.2
Lung, B.3
Shcherbakov, D.4
Piendl, W.5
-
51
-
-
0026520770
-
Methods and algorithms for statistical analysis of protein sequences
-
Brendel V, Bucher P, Nourbakhsh IR, Blaisdell BE, Karlin S, (1992) Methods and algorithms for statistical analysis of protein sequences. Proc Natl Acad Sci U S A 89: 2002-2006.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 2002-2006
-
-
Brendel, V.1
Bucher, P.2
Nourbakhsh, I.R.3
Blaisdell, B.E.4
Karlin, S.5
-
52
-
-
13144276305
-
Conformational variability of the N-terminal helix in the structure of ribosomal protein S15
-
Clemons WM Jr, Davies C, White SW, Ramakrishnan V, (1998) Conformational variability of the N-terminal helix in the structure of ribosomal protein S15. Structure 6: 429-438.
-
(1998)
Structure
, vol.6
, pp. 429-438
-
-
Clemons Jr., W.M.1
Davies, C.2
White, S.W.3
Ramakrishnan, V.4
-
53
-
-
0034036031
-
Crystal structure of the S15-rRNA complex
-
Nikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, et al. (2000) Crystal structure of the S15-rRNA complex. Nat Struct Biol 7: 273-277.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 273-277
-
-
Nikulin, A.1
Serganov, A.2
Ennifar, E.3
Tishchenko, S.4
Nevskaya, N.5
-
54
-
-
0034680628
-
The crystal structure of UUCG tetraloop
-
Ennifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, et al. (2000) The crystal structure of UUCG tetraloop. J Mol Biol 304: 35-42.
-
(2000)
J Mol Biol
, vol.304
, pp. 35-42
-
-
Ennifar, E.1
Nikulin, A.2
Tishchenko, S.3
Serganov, A.4
Nevskaya, N.5
-
55
-
-
0031026421
-
Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus
-
Berglund H, Rak A, Serganov A, Garber M, Hard T, (1997) Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus. Nat Struct Biol 4: 20-23.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 20-23
-
-
Berglund, H.1
Rak, A.2
Serganov, A.3
Garber, M.4
Hard, T.5
-
56
-
-
34147180422
-
The conformational landscape of the ribosomal protein S15 and its influence on the protein interaction with 16S RNA
-
Crety T, Malliavin TE, (2007) The conformational landscape of the ribosomal protein S15 and its influence on the protein interaction with 16S RNA. Biophys J 92: 2647-2665.
-
(2007)
Biophys J
, vol.92
, pp. 2647-2665
-
-
Crety, T.1
Malliavin, T.E.2
-
57
-
-
85047694092
-
Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA
-
Revtovich SV, Nikulin AD, Nikonov SV, (2004) Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA. Biochemistry (Mosc) 69: 1319-1323.
-
(2004)
Biochemistry (Mosc)
, vol.69
, pp. 1319-1323
-
-
Revtovich, S.V.1
Nikulin, A.D.2
Nikonov, S.V.3
-
58
-
-
0032849011
-
Identification of an RNA-protein bridge spanning the ribosomal subunit interface
-
Culver GM, Cate JH, Yusupova GZ, Yusupov MM, Noller HF, (1999) Identification of an RNA-protein bridge spanning the ribosomal subunit interface. Science 285: 2133-2136.
-
(1999)
Science
, vol.285
, pp. 2133-2136
-
-
Culver, G.M.1
Cate, J.H.2
Yusupova, G.Z.3
Yusupov, M.M.4
Noller, H.F.5
-
59
-
-
0027141109
-
Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR
-
Golden BL, Hoffman DW, Ramakrishnan V, White SW, (1993) Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR. Biochemistry 32: 12812-12820.
-
(1993)
Biochemistry
, vol.32
, pp. 12812-12820
-
-
Golden, B.L.1
Hoffman, D.W.2
Ramakrishnan, V.3
White, S.W.4
-
60
-
-
0020665124
-
Structural and functional studies on protein S20 from the 30-S subunit of the Escherichia coli ribosome
-
Paterakis K, Littlechild J, Woolley P, (1983) Structural and functional studies on protein S20 from the 30-S subunit of the Escherichia coli ribosome. Eur J Biochem 129: 543-548.
-
(1983)
Eur J Biochem
, vol.129
, pp. 543-548
-
-
Paterakis, K.1
Littlechild, J.2
Woolley, P.3
-
61
-
-
84863662178
-
Comparison of tRNA's motions in the free and ribosomal bound structures with elastic network models
-
Wang YM, Jernigan RL, (2005) Comparison of tRNA's motions in the free and ribosomal bound structures with elastic network models. Biophys J 88: 183a-183a.
-
(2005)
Biophys J
, vol.88
-
-
Wang, Y.M.1
Jernigan, R.L.2
-
62
-
-
79959582444
-
MAVENs: motion analysis and visualization of elastic networks and structural ensembles
-
Zimmermann MT, Kloczkowski A, Jernigan RL, (2011) MAVENs: motion analysis and visualization of elastic networks and structural ensembles. BMC Bioinformatics 12: 264.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 264
-
-
Zimmermann, M.T.1
Kloczkowski, A.2
Jernigan, R.L.3
-
63
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, et al. (2001) Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys J 80: 505-515.
-
(2001)
Biophys J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
-
64
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
65
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case DA, Cheatham TE 3rd, Darden T, Gohlke H, Luo R, et al. (2005) The Amber biomolecular simulation programs. J Comput Chem 26: 1668-1688.
-
(2005)
J Comput Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham 3rd, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
-
66
-
-
34250318638
-
Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers
-
Perez A, Marchan I, Svozil D, Sponer J, Cheatham TE 3rd, et al. (2007) Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers. Biophys J 92: 3817-3829.
-
(2007)
Biophys J
, vol.92
, pp. 3817-3829
-
-
Perez, A.1
Marchan, I.2
Svozil, D.3
Sponer, J.4
Cheatham 3rd, T.E.5
-
67
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML, (1983) Comparison of Simple Potential Functions for Simulating Liquid Water. J Chem Phys 79: 926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
68
-
-
33646940952
-
Numerical-Integration of Cartesian Equations of Motion of a System with Constraints - Molecular-Dynamics of N-Alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC, (1977) Numerical-Integration of Cartesian Equations of Motion of a System with Constraints- Molecular-Dynamics of N-Alkanes. J Comput Phys 23: 327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
69
-
-
84986440341
-
Settle - an Analytical Version of the Shake and Rattle Algorithm for Rigid Water Models
-
Miyamoto S, Kollman PA, (1992) Settle- an Analytical Version of the Shake and Rattle Algorithm for Rigid Water Models. J Comput Chem 13: 952-962.
-
(1992)
J Comput Chem
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
70
-
-
33846823909
-
Particle Mesh Ewald - an N.Log(N) Method for Ewald Sums in Large Systems
-
Darden T, York D, Pedersen L, (1993) Particle Mesh Ewald- an N.Log(N) Method for Ewald Sums in Large Systems. J Chem Phys 98: 10089-10092.
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
72
-
-
0000197372
-
Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis
-
Tirion MM, (1996) Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis. Phys Rev Lett 77: 1905-1908.
-
(1996)
Phys Rev Lett
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
73
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar I, Atilgan AR, Erman B, (1997) Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des 2: 173-181.
-
(1997)
Fold Des
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
75
-
-
33748469301
-
A new method for coarse-grained elastic normal-mode analysis
-
Ma JP, Lu MY, Poon B, (2006) A new method for coarse-grained elastic normal-mode analysis. J Chem Theory Comput 2: 464-471.
-
(2006)
J Chem Theory Comput
, vol.2
, pp. 464-471
-
-
Ma, J.P.1
Lu, M.Y.2
Poon, B.3
|