-
1
-
-
0024589458
-
Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymatic activity, not, however the preference of this restriction endonuclease for cleavage within the site - GAATTC
-
DOI 10.1021/bi00432a047
-
Alves J, Ruter T, Geiger R, Fliess A, Maass G, Pingoud A (1989)Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymatic activity, not, however, the preference of this restriction endonuclease for cleavage within the site-GAATTC. Biochemistry 28:2678-2684 (Pubitemid 19094389)
-
(1989)
Biochemistry
, vol.28
, Issue.6
, pp. 2678-2684
-
-
Alves, J.1
Ruter, T.2
Geiger, R.3
Fliess, A.4
Maass, G.5
Pingoud, A.6
-
2
-
-
0027536144
-
Restriction endonucleases and modification methylases
-
DOI 10.1016/0959-440X(93)90197-S
-
Anderson JE (1993) Restriction endonucleases and modification methylases.Curr Opin Struct Biol 3:24-30 (Pubitemid 23058379)
-
(1993)
Current Opinion in Structural Biology
, vol.3
, Issue.1
, pp. 24-30
-
-
Anderson, J.E.1
-
3
-
-
0034664813
-
Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories
-
Aravind L, Makarova KS, Koonin EV (2000) Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories. Nucleic Acids Res 28:3417-3432
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3417-3432
-
-
Aravind, L.1
Makarova, K.S.2
Koonin, E.V.3
-
4
-
-
29244476241
-
Mva1269I: A monomeric type IIS restriction endonuclease from micrococcus varians with two EcoRI- and FokI-like catalytic domains
-
DOI 10.1074/jbc.M506775200
-
Armalyte E, Bujnicki JM, Giedriene J, Gasiunas G, Kosinski J, Lubys A (2005) Mva1269I: a monomeric type IIS restriction endonuclease from Micrococcus varians with two EcoRI- and FokI-like catalytic domains. J Biol Chem 280:41584-41594 (Pubitemid 41832221)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.50
, pp. 41584-41594
-
-
Armalyte, E.1
Bujnicki, J.M.2
Giedriene, J.3
Gasiunas, G.4
Kosinski, J.5
Lubys, A.6
-
5
-
-
33745278855
-
Computational redesign of endonuclease DNA binding and cleavage specificity
-
DOI 10.1038/nature04818, PII N04818
-
Ashworth J, Havranek JJ, Duarte CM, Sussman D, Monnat RJ Jr, Stoddard BL, Baker D (2006) Computational redesign of endonuclease DNA binding and cleavage specificity. Nature 441:656-659 (Pubitemid 43927299)
-
(2006)
Nature
, vol.441
, Issue.7093
, pp. 656-659
-
-
Ashworth, J.1
Havranek, J.J.2
Duarte, C.M.3
Sussman, D.4
Monnat Jr., R.J.5
Stoddard, B.L.6
Baker, D.7
-
8
-
-
33947512392
-
A mutation in the mod subunit of EcoP15I restriction enzyme converts the DNA methyltransferase to a site-specific endonuclease
-
DOI 10.1074/jbc.M603250200
-
Bist P, Madhusoodanan UK, Rao DN (2006) A mutation in the Mod subunit of EcoP15I restriction enzyme converts the DNA methyltransferase to a site-specific endonuclease. J Biol Chem 282:3520-3530 (Pubitemid 47084446)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.6
, pp. 3520-3530
-
-
Bist, P.1
Madhusoodanan, U.K.2
Rao, D.N.3
-
9
-
-
72149110399
-
Breaking the code of DNA binding specificity of TAL-type III effectors
-
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U (2009) Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326:1509-1512
-
(2009)
Science
, vol.326
, pp. 1509-1512
-
-
Boch, J.1
Scholze, H.2
Schornack, S.3
Landgraf, A.4
Hahn, S.5
Kay, S.6
Lahaye, T.7
Nickstadt, A.8
Bonas, U.9
-
11
-
-
0033933471
-
Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures
-
Bujnicki JM (2000) Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures. J Mol Evol 50:39-44 (Pubitemid 30430001)
-
(2000)
Journal of Molecular Evolution
, vol.50
, Issue.1
, pp. 39-44
-
-
Bujnicki, J.M.1
-
12
-
-
84934442059
-
Gene targeting in Drosophila and Caenorhabditis elegans with zincfinger nucleases
-
Carroll D, Beumer KJ, Morton JJ, Bozas A, Trautman JK (2008) Gene targeting in Drosophila and Caenorhabditis elegans with zincfinger nucleases. Methods Mol Biol 435:63-77
-
(2008)
Methods Mol Biol
, vol.435
, pp. 63-77
-
-
Carroll, D.1
Beumer, K.J.2
Morton, J.J.3
Bozas, A.4
Trautman, J.K.5
-
13
-
-
33749246561
-
Epigenetic gene regulation in the bacterial world
-
DOI 10.1128/MMBR.00016-06
-
Casadesus J, Low D (2006) Epigenetic gene regulation in the bacterial world. Microbiol Mol Biol Rev 70:830-856 (Pubitemid 44484694)
-
(2006)
Microbiology and Molecular Biology Reviews
, vol.70
, Issue.3
, pp. 830-856
-
-
Casadesus, J.1
Low, D.2
-
14
-
-
84862648338
-
Method of producing recombinant endonucleases
-
Chae YK (2010) Method of producing recombinant endonucleases.KR Patent 20100098204
-
(2010)
KR Patent
, pp. 20100098204
-
-
Chae, Y.K.1
-
15
-
-
70450223109
-
Changing the DNA recognition specificity of the EcoDam DNA-(adenine-N6)-methyltransferase by directed evolution
-
Chahar S, Elsawy H, Ragozin S, Jeltsch A (2010) Changing the DNA recognition specificity of the EcoDam DNA-(adenine-N6)-methyltransferase by directed evolution. J Mol Biol 395:79-88
-
(2010)
J Mol Biol
, vol.395
, pp. 79-88
-
-
Chahar, S.1
Elsawy, H.2
Ragozin, S.3
Jeltsch, A.4
-
16
-
-
13444305311
-
Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification
-
DOI 10.1093/nar/gkh958
-
Chan SH, Zhu Z, Van Etten JL, Xu SY (2004) Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification. Nucleic Acids Res 32:6187-6199 (Pubitemid 40202078)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.21
, pp. 6187-6199
-
-
Chan, S.-H.1
Zhu, Z.2
Van Etten, J.L.3
Xu, S.-Y.4
-
17
-
-
33746830910
-
Cloning of Nt.CviQII nicking endonuclease and its cognate methyltransferase: M.CviQII methylates AG sequences
-
DOI 10.1016/j.pep.2006.04.002, PII S1046592806001100
-
Chan SH, Zhu Z, Dunigan DD, Van Etten JL, Xu SY (2006) Cloning of Nt.CviQII nicking endonuclease and its cognate methyltransferase:M.CviQII methylates AG sequences. Protein Expr Purif 49:138-150 (Pubitemid 44278633)
-
(2006)
Protein Expression and Purification
, vol.49
, Issue.1
, pp. 138-150
-
-
Chan, S.-h.1
Zhu, Z.2
Dunigan, D.D.3
Van Etten, J.L.4
Xu, S.-y.5
-
18
-
-
35548993664
-
Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities
-
DOI 10.1093/nar/gkm665
-
Chan SH, Bao Y, Ciszak E, Laget S, Xu SY (2007) Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities. Nucleic Acids Res 35:6238-6248 (Pubitemid 350018585)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.18
, pp. 6238-6248
-
-
Chan, S.-H.1
Bao, Y.2
Ciszak, E.3
Laget, S.4
Xu, S.-Y.5
-
19
-
-
78651319695
-
Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity
-
Chan SH, Stoddard BL, Xu SY (2011) Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity. Nucleic Acids Res 39:1-18
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1-18
-
-
Chan, S.H.1
Stoddard, B.L.2
Xu, S.Y.3
-
20
-
-
84862697117
-
Functional domains in Flavobacterium okeanokoites (FokI) restriction endonuclease
-
Chandrasegaran S (1994) Functional domains in Flavobacterium okeanokoites (FokI) restriction endonuclease. US Patent 5356802
-
(1994)
US Patent
, pp. 5356802
-
-
Chandrasegaran, S.1
-
21
-
-
84862673057
-
Insertion and deletion mutants of FokI restriction endonuclease
-
Chandrasegaran S (1996) Insertion and deletion mutants of FokI restriction endonuclease. US Patent 5487994
-
(1996)
US Patent
, pp. 5487994
-
-
Chandrasegaran, S.1
-
22
-
-
79955984480
-
Recognition of an expanded genetic alphabet by type-II restriction endonucleases and their application to analyze polymerase fidelity
-
Chen F, Yang Z, Yan M, Alvarado JB, Wang G, Benner SA (2011)Recognition of an expanded genetic alphabet by type-II restriction endonucleases and their application to analyze polymerase fidelity.Nucleic Acids Res 39:1-13
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1-13
-
-
Chen, F.1
Yang, Z.2
Yan, M.3
Alvarado, J.B.4
Wang, G.5
Benner, S.A.6
-
23
-
-
78951479577
-
Targeting DNA double-strand breaks with TAL effector nucleases
-
Christian M, Cermak T, Doyle EL, Schmidt C, Zhang F, Hummel A, Bogdanove AJ, Voytas DF (2010) Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186:757-761
-
(2010)
Genetics
, vol.186
, pp. 757-761
-
-
Christian, M.1
Cermak, T.2
Doyle, E.L.3
Schmidt, C.4
Zhang, F.5
Hummel, A.6
Bogdanove, A.J.7
Voytas, D.F.8
-
24
-
-
0842313326
-
Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization
-
DOI 10.1093/protein/gzh001
-
Cohen HM, Tawfik DS, Griffiths AD (2004) Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization. Protein Eng Des Sel 17:3-11 (Pubitemid 38173163)
-
(2004)
Protein Engineering, Design and Selection
, vol.17
, Issue.1
, pp. 3-11
-
-
Cohen, H.M.1
Tawfik, D.S.2
Griffiths, A.D.3
-
25
-
-
0033613907
-
Genetic analysis of the base-specific contacts of BamHI restriction endonuclease
-
DOI 10.1006/jmbi.1998.2408
-
Dorner LF, Bitinaite J, Whitaker RD, Schildkraut I (1999) Genetic analysis of the base-specific contacts of BamHI restriction endonuclease.J Mol Biol 285:1515-1523 (Pubitemid 29060452)
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.4
, pp. 1515-1523
-
-
Dorner, L.F.1
Bitinaite, J.2
Whitaker, R.D.3
Schildkraut, I.4
-
26
-
-
78650912707
-
Enhancing zincfinger-nuclease activity with improved obligate heterodimeric architectures
-
Doyon Y, Vo TD, Mendel MC, Greenberg SG, Wang J, Xia DF, Miller JC, Urnov FD, Gregory PD, Holmes MC (2011) Enhancing zincfinger-nuclease activity with improved obligate heterodimeric architectures. Nat Methods 8:74-79
-
(2011)
Nat Methods
, vol.8
, pp. 74-79
-
-
Doyon, Y.1
Vo, T.D.2
Mendel, M.C.3
Greenberg, S.G.4
Wang, J.5
Xia, D.F.6
Miller, J.C.7
Urnov, F.D.8
Gregory, P.D.9
Holmes, M.C.10
-
27
-
-
0035883536
-
Nucleoside triphosphatedependent restriction enzymes
-
Dryden T, Murray NE, Rao DN (2001) Nucleoside triphosphatedependent restriction enzymes. Nucleic Acids Res 29:3728-3741
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3728-3741
-
-
Dryden, T.1
Murray, N.E.2
Rao, D.N.3
-
28
-
-
5444275269
-
++-requiring isoschizomer of BsiYI from Anoxybacillus flavithermus
-
DOI 10.1023/B:WIBI.0000043173.88074.14
-
D'Souza DR, Morgan RD, Parashar V, Capalash N, Sharma P (2004)Characterization of BflI-a thermostable, Co++-requiring isoschizomer of BsiYI from Anoxybacillus flavithermus. World J Microbiol Biotechnol 20:593-598 (Pubitemid 39350979)
-
(2004)
World Journal of Microbiology and Biotechnology
, vol.20
, Issue.6
, pp. 593-598
-
-
D'Souza, D.R.1
Morgan, R.D.2
Parashar, V.3
Capalash, N.4
Sharma, P.5
-
29
-
-
27744530147
-
Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
-
DOI 10.1093/nar/gki912
-
Durai S, Mani M, Kandavelou K, Wu J, Porteus MH, Chandrasegaran S (2005) Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells.Nucleic Acids Res 33:5978-5990 (Pubitemid 41742617)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.18
, pp. 5978-5990
-
-
Durai, S.1
Mani, M.2
Kandavelou, K.3
Wu, J.4
Porteus, M.H.5
Chandrasegaran, S.6
-
30
-
-
31144471228
-
Developing a programmed restriction endonuclease for highly specific DNA cleavage
-
DOI 10.1093/nar/gki1009
-
Eisenschmidt K, Lanio T, Simoncsits A, Jeltsch A, Pingoud V, Wende W, Pingoud A (2005) Developing a programmed restriction endonuclease for highly specific DNA cleavage. Nucleic Acids Res 33:7039-7047 (Pubitemid 43125073)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.22
, pp. 7039-7047
-
-
Eisenschmidt, K.1
Lanio, T.2
Simoncsits, A.3
Jeltsch, A.4
Pingoud, V.5
Wende, W.6
Pingoud, A.7
-
31
-
-
0038268049
-
A novel engineered meganuclease induces homologous recombination in yeast and mammalian cells
-
DOI 10.1093/nar/gkg375
-
Epinat JC, Arnould S, Chames RP, Desfontaines D, Puzin C, Patin ZA, Paques F, Lacroix E (2003) A novel engineered meganuclease induces homologous recombination in yeast and mammalian cells. Nucleic Acids Res 31:2952-2962 (Pubitemid 37442138)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.11
, pp. 2952-2962
-
-
Epinat, J.-C.1
Arnould, S.2
Chames, P.3
Rochaix, P.4
Desfontaines, D.5
Puzin, C.6
Patin, A.7
Zanghellini, A.8
Paques, F.9
Lacroix, E.10
-
32
-
-
0032961229
-
New approaches to cancer therapies
-
DOI 10.1002/(SICI)1096-9896(199901)187:1<138::AID-PATH252>3.0.CO;2- M
-
Fahraeus R, Fischer P, Krausz E, Lane DP (1999) New approaches to cancer therapies. J Pathol 187:138-146 (Pubitemid 29009843)
-
(1999)
Journal of Pathology
, vol.187
, Issue.1
, pp. 138-146
-
-
Fahraeus, R.1
Fischer, P.2
Krausz, E.3
Lane, D.P.4
-
33
-
-
84862697118
-
Artificial endonuclease
-
Franklin S (2006) Artificial endonuclease. US Patent 7091026
-
(2006)
US Patent
, pp. 7091026
-
-
Franklin, S.1
-
34
-
-
57649174743
-
Cell death upon epigenetic genome methylation: A novel function of methylspecific deoxyribonucleases
-
Fukuda E, Kaminska KH, Bujnicki JM, Kobayashi I (2008) Cell death upon epigenetic genome methylation: a novel function of methylspecific deoxyribonucleases. Genome Biol 9:163
-
(2008)
Genome Biol
, vol.9
, pp. 163
-
-
Fukuda, E.1
Kaminska, K.H.2
Bujnicki, J.M.3
Kobayashi, I.4
-
35
-
-
0021716468
-
Genetic recombination can generate altered restriction specificity
-
DOI 10.1073/pnas.81.19.6095
-
Fuller-Pace FV, Bullas LR, Delius H, Murray NE (1984) Genetic recombination can generate altered restriction specificity. Proc Natl Acad Sci USA 81:6095-6099 (Pubitemid 15219599)
-
(1984)
Proceedings of the National Academy of Sciences of the United States of America
, vol.81
, Issue.19
, pp. 6095-6099
-
-
Fuller-Pace, F.V.1
Bullas, L.R.2
Delius, H.3
Murray, N.E.4
-
36
-
-
0034656221
-
Invasion of a multitude of genetic niches by mobile endonuclease genes
-
DOI 10.1016/S0378-1097(00)00069-0, PII S0378109700000690
-
Gimble FS (2000) Invasion of a multitude of genetic niches by mobile endonuclease genes. FEMS Microbiol Lett 185:99-107 (Pubitemid 30168983)
-
(2000)
FEMS Microbiology Letters
, vol.185
, Issue.2
, pp. 99-107
-
-
Gimble, F.S.1
-
38
-
-
84862673058
-
Restriction endonuclease variants with altered cleavage specificity and/or reduction of star activity
-
Guan S, Zhu Z, Blanchard A (2011) Restriction endonuclease variants with altered cleavage specificity and/or reduction of star activity.WO Patent 2011028841
-
(2011)
WO Patent
, pp. 2011028841
-
-
Guan, S.1
Zhu, Z.2
Blanchard, A.3
-
39
-
-
0026540803
-
Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction modification enzymes
-
Gubler M, Braguglia D, Meyer J, Piekarowicz A, Bickle TA (1992)Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction modification enzymes. EMBO J 11:233-240
-
(1992)
EMBO J
, vol.11
, pp. 233-240
-
-
Gubler, M.1
Braguglia, D.2
Meyer, J.3
Piekarowicz, A.4
Bickle, T.A.5
-
40
-
-
77953702888
-
Directed evolution of an enhanced and highly efficient FokI cleavage domain for zinc finger nucleases
-
Guo J, Gaj T, Barbas CFIII (2010) Directed evolution of an enhanced and highly efficient FokI cleavage domain for zinc finger nucleases. J Mol Biol 400:96-107
-
(2010)
J Mol Biol
, vol.400
, pp. 96-107
-
-
Guo, J.1
Gaj, T.2
Barbas, C.F.I.I.I.3
-
41
-
-
84863748275
-
Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYI
-
Mol Biol Reports
-
Gupta R, Xu SY, Sharma P, Capalash N (2011) Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable type II restriction endonucleases from Meiothermus sp., isoschizomers of AvaII and BstYI. Mol Biol Reports DOI: 10.1007/s11033-011-1365-2
-
(2011)
Mol Biol Reports
-
-
Gupta, R.1
Xu, S.Y.2
Sharma, P.3
Capalash, N.4
-
42
-
-
65549132085
-
Method for engineering strand-specific, sequence-specific, DNA-nicking enzymes
-
Heiter D, Lunnen K, Wilson GG (2006) Method for engineering strand-specific, sequence-specific, DNA-nicking enzymes. US Patent 7081358
-
(2006)
US Patent
, pp. 7081358
-
-
Heiter, D.1
Lunnen, K.2
Wilson, G.G.3
-
44
-
-
0035875116
-
The nicking endonuclease N.BstNBI is closely related to Type IIs restriction endonucleases Mlyl and Plel
-
Higgins L, Besnier C, Kong H (2001) The nicking endonuclease N.BstNBI is closely related to type IIs restriction endonucleases MlyI and PleI. Nucleic Acids Res 29:2492-2501 (Pubitemid 32600304)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.12
, pp. 2492-2501
-
-
Higgins, L.S.1
Besnier, C.2
Kong, H.3
-
45
-
-
25144458391
-
Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems
-
DOI 10.1128/JB.187.19.6612-6621.2005
-
Ichige A, Kobayashi I (2005) Stability of EcoRI restriction modification enzymes in vivo differentiates the EcoRI restriction modification system from other postsegregational cell killing system. J Bacteriol 187:6612-6621 (Pubitemid 41356233)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.19
, pp. 6612-6621
-
-
Ichige, A.1
Kobayashi, I.2
-
47
-
-
0030183768
-
Engineering novel restriction endonucleases: Principles and applications
-
Jeltsch A, Wenz C, WendeW, Selent U, Pingoud A (1996) Engineering novel restriction endonucleases: principles and applications.Trends Biotechnol 14:235-238
-
(1996)
Trends Biotechnol
, vol.14
, pp. 235-238
-
-
Jeltsch, A.1
Wenz, C.2
Wende, W.3
Selent, U.4
Pingoud, A.5
-
48
-
-
34250825379
-
Application of DNA methyltransferases in targeted DNA methylation
-
DOI 10.1007/s00253-007-0966-0
-
Jeltsch A, Jurkowska RZ, Jurkowski TP, Liebert K, Rathert P, Schlickenrieder M(2007) Application of DNA methyltransferases in targeted DNA methylation. Appl Microbiol Biotechnol 75:1233-1240 (Pubitemid 46976679)
-
(2007)
Applied Microbiology and Biotechnology
, vol.75
, Issue.6
, pp. 1233-1240
-
-
Jeltsch, A.1
Jurkowska, R.Z.2
Jurkowski, T.P.3
Liebert, K.4
Rathert, P.5
Schlickenrieder, M.6
-
49
-
-
0028968950
-
DNA topoisomerase and recombinase activities in NaeI restriction endonuclease
-
Jo K, Topal MD (1995) DNA topoisomerase and recombinase activities in NaeI restriction endonuclease. Science 267:1817-1820
-
(1995)
Science
, vol.267
, pp. 1817-1820
-
-
Jo, K.1
Topal, M.D.2
-
50
-
-
33747689885
-
Alteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanism
-
DOI 10.1074/jbc.M512339200
-
Joshi HK, Etzkorn C, Chatwell L, Bitinaite J, Horton NC (2006)Alteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanism. J Biol Chem 281:23852-23869 (Pubitemid 44274161)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.33
, pp. 23852-23869
-
-
Joshi, H.K.1
Etzkorn, C.2
Chatwell, L.3
Bitinaite, J.4
Horton, N.C.5
-
52
-
-
60849102182
-
Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site
-
Kaminska KH, Kawai M, Boniecki M, Kobayashi I, Bujnicki JM (2008) Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site. BMC Struct Biol 8:48
-
(2008)
BMC Struct Biol
, vol.8
, pp. 48
-
-
Kaminska, K.H.1
Kawai, M.2
Boniecki, M.3
Kobayashi, I.4
Bujnicki, J.M.5
-
53
-
-
35548967534
-
Sequence specific detection of DNA using nicking endonuclease signal amplification (NESA)
-
Kiesling T, Cox K, Davidson EA, Dretchen K, Grater G, Hibbard S, Lasken RS, Leshin J, Skowronski E, Danielsen M (2007) Sequence specific detection of DNA using nicking endonuclease signal amplification (NESA). Nucleic Acids Res 35:e117
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kiesling, T.1
Cox, K.2
Davidson, E.A.3
Dretchen, K.4
Grater, G.5
Hibbard, S.6
Lasken, R.S.7
Leshin, J.8
Skowronski, E.9
Danielsen, M.10
-
54
-
-
0031960121
-
Chimeric restriction enzyme: Gal4 fusion to Fokl cleavage domain
-
Kim YG, Smith J, Durgesha M, Chandrasegaran S (1998) Chimeric restriction enzyme: Gal4 fusion to FokI cleavage domain. Biol Chem 379:489-495 (Pubitemid 28209921)
-
(1998)
Biological Chemistry
, vol.379
, Issue.4-5
, pp. 489-495
-
-
Kim, Y.-G.1
Smith, J.2
Durgesha, M.3
Chandrasegaran, S.4
-
55
-
-
34447128115
-
Realm of PD-(D/E)XK nuclease superfamily revisited: Detection of novel families with modified transitive meta profile searches
-
Knizewski L, Kinch LN, Grishin NV, Rychlewski L, Ginalski K (2007)Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches.BMC Struct Biol 7:40
-
(2007)
BMC Struct Biol
, vol.7
, pp. 40
-
-
Knizewski, L.1
Kinch, L.N.2
Grishin, N.V.3
Rychlewski, L.4
Ginalski, K.5
-
56
-
-
84862648336
-
Engineering nicking endonucleases from type IIs restriction endonucleases
-
Kong H, Besnier C, Xu Y (2002) Engineering nicking endonucleases from type IIs restriction endonucleases. US Patent 6395523
-
(2002)
US Patent
, pp. 6395523
-
-
Kong, H.1
Besnier, C.2
Xu, Y.3
-
57
-
-
25444522883
-
The PD-(D/E)XK superfamily revisited: Identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function
-
Kosinski J, Feder M, Bujnicki JM (2005) The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function. BMC Bioinforma 6:172
-
(2005)
BMC Bioinforma
, vol.6
, pp. 172
-
-
Kosinski, J.1
Feder, M.2
Bujnicki, J.M.3
-
58
-
-
79956030101
-
Degenerate sequence recognition by the monomeric restriction enzyme:Single mutation converts BcnI into a strand-specific nicking endonuclease
-
Kostiuk G, Sasnauskas G, Tamulaitiene G, Siksnys V (2010) Degenerate sequence recognition by the monomeric restriction enzyme:single mutation converts BcnI into a strand-specific nicking endonuclease.Nucleic Acids Res 39:3744-3753
-
(2010)
Nucleic Acids Res
, vol.39
, pp. 3744-3753
-
-
Kostiuk, G.1
Sasnauskas, G.2
Tamulaitiene, G.3
Siksnys, V.4
-
59
-
-
0032493296
-
Structural, functional, and evolutionary relationships between-exonuclease and the type II restriction endonucleases
-
Kovall RA, Matthews BW (1998) Structural, functional, and evolutionary relationships between-exonuclease and the type II restriction endonucleases. Proc Natl Acad Sci USA 95:7893-7897
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 7893-7897
-
-
Kovall, R.A.1
Matthews, B.W.2
-
60
-
-
0032848682
-
Type II restriction endonucleases: Structural, functional and evolutionary relationships
-
DOI 10.1016/S1367-5931(99)00012-5
-
Kovall RA, Matthews BW (1999) Type II restriction endonucleases: structural, functional and evolutionary relationships. Curr Opin Chem Biol 3:578-583 (Pubitemid 29447494)
-
(1999)
Current Opinion in Chemical Biology
, vol.3
, Issue.5
, pp. 578-583
-
-
Kovall, R.A.1
Matthews, B.W.2
-
61
-
-
0033459467
-
Structural parsimony in endonuclease active sites: Should the number of homing endonuclease families be redefined?
-
DOI 10.1016/S0014-5793(99)01499-4, PII S0014579399014994
-
Kuhlmann UC, Moore GR, James R, Kleanthous C, Hemmings AM (1999) Structural parsimony in endonuclease active sites: should the number of homing endonuclease families be redefined? FEBS Lett 463:1-2 (Pubitemid 30001705)
-
(1999)
FEBS Letters
, vol.463
, Issue.1-2
, pp. 1-2
-
-
Kuhlmann, U.C.1
Moore, G.R.2
James, R.3
Kleanthous, C.4
Hemmings, A.M.5
-
62
-
-
42449087285
-
Labeling of unique sequences in double-stranded DNA at sites of vicinal nicks generated by nicking endonucleases
-
Kuhn H, Frank-Kamenetskii MD (2008) Labeling of unique sequences in double-stranded DNA at sites of vicinal nicks generated by nicking endonucleases. Nucleic Acids Res 36:e40
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kuhn, H.1
Frank-Kamenetskii, M.D.2
-
63
-
-
79952318529
-
Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments
-
Laganeckas M, Margelevicius M, Venclovas C (2011) Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments.Nucleic Acids Res 39:1187-1196
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1187-1196
-
-
Laganeckas, M.1
Margelevicius, M.2
Venclovas, C.3
-
64
-
-
0034026486
-
On the possibilities and limitations of rational protein design to expand the specificity of restriction enzymes: A case study employing EcoRV as the target
-
Lanio T, Jeltsch A, Pingoud A (2000) On the possibilities and limitations of rational protein design to expand the specificity of restriction enzymes: a case study employing EcoRVas the target.Protein Eng 13:275-281 (Pubitemid 30258962)
-
(2000)
Protein Engineering
, vol.13
, Issue.4
, pp. 275-281
-
-
Lanio, T.1
Jeltsch, A.2
Pingoud, A.3
-
66
-
-
66249145050
-
Creation of a type IIS restriction endonuclease with a long recognition sequence
-
Lippow SM, Aha PM, Parker MH, Blake WJ, Baynes BM, Lipovsek D (2009) Creation of a type IIS restriction endonuclease with a long recognition sequence. Nucleic Acids Res 37:3061-3073
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3061-3073
-
-
Lippow, S.M.1
Aha, P.M.2
Parker, M.H.3
Blake, W.J.4
Baynes, B.M.5
Lipovsek, D.6
-
67
-
-
77949885922
-
Homing endonucleases: From basics to therapeutic applications
-
Marcaida MJ, Muñoz IG, Blanco FJ, Prieto J, Montoya G (2010)Homing endonucleases: from basics to therapeutic applications.Cell Mol Life Sci 67:727-748
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 727-748
-
-
Marcaida, M.J.1
Muñoz, I.G.2
Blanco, F.J.3
Prieto, J.4
Montoya, G.5
-
68
-
-
0033614808
-
Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease
-
Martin AM, Horton NC, Luseti S, Reich NO, Perona JJ (1999) Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease. Biochemistry 38:8430-8439
-
(1999)
Biochemistry
, vol.38
, pp. 8430-8439
-
-
Martin, A.M.1
Horton, N.C.2
Luseti, S.3
Reich, N.O.4
Perona, J.J.5
-
69
-
-
0027501321
-
Macroevolution by transposition: Drastic modification of DNA recognition by a type I restriction enzyme following Tn5 transposition
-
Meister J, MacWilliams M, Hubner P, Jutte H, Skrzypek E, Piekarowicz A, Bickle TA (1993) Macroevolution by transposition:drastic modification of DNA recognition by a type I restriction enzyme following Tn5 transposition. EMBO J 12:4585-4591 (Pubitemid 23330264)
-
(1993)
EMBO Journal
, vol.12
, Issue.12
, pp. 4585-4591
-
-
Meister, J.1
MacWilliams, M.2
Hubner, P.3
Jutte, H.4
Skrzypek, E.5
Piekarowicz, A.6
Bickle, T.A.7
-
70
-
-
44949162060
-
Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases
-
DOI 10.1038/nbt1398, PII NBT1398
-
Meng X, Noyes MB, Zhu LJ, Lawson ND, Wolfe SA (2008) Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases. Nat Biotechnol 26:695-701 (Pubitemid 351809594)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.6
, pp. 695-701
-
-
Meng, X.1
Noyes, M.B.2
Zhu, L.J.3
Lawson, N.D.4
Wolfe, S.A.5
-
71
-
-
34848834770
-
Purification, crystallization, X-ray diffraction analysis and phasing of an engineered single-chain PvuII restriction endonuclease
-
DOI 10.1107/S1744309107040377, PII S1744309107040377
-
Meramveliotaki C, Kotsifaki D, Androulaki M, Hountas A, Eliopoulos E, Kokkinidis M (2007) Purification, crystallization, X-ray diffraction analysis and phasing of an engineered single-chain PvuII restriction endonuclease. Acta Crystallogr Sect F Struct Biol Cryst Commun 63:836-838 (Pubitemid 47511894)
-
(2007)
Acta Crystallographica Section F: Structural Biology and Crystallization Communications
, vol.63
, Issue.10
, pp. 836-838
-
-
Meramveliotaki, C.1
Kotsifaki, D.2
Androulaki, M.3
Hountas, A.4
Eliopoulos, E.5
Kokkinidis, M.6
-
72
-
-
34247886142
-
Novel protein fold discovered in the PabI family of restriction enzymes
-
DOI 10.1093/nar/gkm091
-
Miyazono K, Watanabe M, Kosinski J, Ishikawa K, Kamo M, Sawasaki T, Nagata K, Bujnicki JM, Endo Y, Tanokura M (2007) Novel protein fold discovered in the PabI family of restriction enzymes.Nucleic Acids Res 35:1908-1918 (Pubitemid 47061659)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.6
, pp. 1908-1918
-
-
Miyazono, K.-I.1
Watanabe, M.2
Kosinski, J.3
Ishikawa, K.4
Kamo, M.5
Sawasaki, T.6
Nagata, K.7
Bujnicki, J.M.8
Endo, Y.9
Tanokura, M.10
Kobayashi, I.11
-
73
-
-
84862648334
-
Recombinant type II restriction endonuclease, NmeAIII, and a process for producing the same
-
Morgan RD (2010) Recombinant type II restriction endonuclease, NmeAIII, and a process for producing the same. US Patent 20100159534
-
(2010)
US Patent
, pp. 20100159534
-
-
Morgan, R.D.1
-
74
-
-
69849088756
-
Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity
-
Morgan RD, Luyten YA (2009) Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity. Nucleic Acids Res 37:5222-5233
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5222-5233
-
-
Morgan, R.D.1
Luyten, Y.A.2
-
75
-
-
84862673056
-
Recombinant type II restriction endonucleases, MmeI and related endonucleases and methods for producing the same
-
Morgan RD, Bhatia T, Davis T, Lovasco L (2006) Recombinant type II restriction endonucleases, MmeI and related endonucleases and methods for producing the same. US Patent 7115407
-
(2006)
US Patent
, pp. 7115407
-
-
Morgan, R.D.1
Bhatia, T.2
Davis, T.3
Lovasco, L.4
-
76
-
-
84862648335
-
Novel modular type II restriction endonuclease, CspCI, and the use of modular endonucleases for generating endonucleases with new specificities
-
Morgan R, Wilson G, Lunnen K, Heiter D, Benner J, Nkenfou CN, Picone S (2007) Novel modular type II restriction endonuclease, CspCI, and the use of modular endonucleases for generating endonucleases with new specificities. US Patent 20070166719
-
(2007)
US Patent
, pp. 20070166719
-
-
Morgan, R.1
Wilson, G.2
Lunnen, K.3
Heiter, D.4
Benner, J.5
Nkenfou, C.N.6
Picone, S.7
-
77
-
-
69849115232
-
The MmeI family: Type II restriction-modification enzymes that employ single-strand modification for host protection
-
Morgan RD, Dwinell EA, Bhatia TK, Lang EM, Luyten YA (2009)The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection. Nucleic Acids Res 37:5208-1521
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5208-1521
-
-
Morgan, R.D.1
Dwinell, E.A.2
Bhatia, T.K.3
Lang, E.M.4
Luyten, Y.A.5
-
78
-
-
0034130457
-
Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle)
-
Murray NE (2000) Type I restriction enzymes: sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol Mol Biol Rev 64:412-434 (Pubitemid 30412679)
-
(2000)
Microbiology and Molecular Biology Reviews
, vol.64
, Issue.2
, pp. 412-434
-
-
Murray, N.E.1
-
79
-
-
0036146923
-
Immigration control of DNA in bacteria: Self versus non-self
-
Murray NE (2002) Fred Griffith review lecture. Immigration control of DNA in bacteria: self versus non-self. Microbiology 148:3-20 (Pubitemid 34083180)
-
(2002)
Microbiology
, vol.148
, Issue.1
, pp. 3-20
-
-
Murray, N.E.1
-
80
-
-
78650502368
-
Sequence-specific cleavage of RNA by type II restriction enzymes
-
Murray IA, Stickel SK, Roberts RJ (2010) Sequence-specific cleavage of RNA by type II restriction enzymes. Nucleic Acids Res 38:8257-8268
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 8257-8268
-
-
Murray, I.A.1
Stickel, S.K.2
Roberts, R.J.3
-
81
-
-
0021967254
-
A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificity
-
DOI 10.1038/316371a0
-
Nagaraja V, Shepherd JC, Bickle TA (1985) A hybrid recognition sequence in a recombinant restriction enzyme and the evolution of DNA sequence specificity. Nature 316:371-372 (Pubitemid 15237816)
-
(1985)
Nature
, vol.316
, Issue.6026
, pp. 371-372
-
-
Nagaraja, V.1
Shepherd, J.C.W.2
Bickle, T.A.3
-
82
-
-
0032530311
-
Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence
-
DOI 10.1093/emboj/17.18.5466
-
Newman M, Lunnen K, Wilson G, Greci J, Schildkraut I, Phillips SE (1998) Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence. EMBO J 17:5466-5476 (Pubitemid 28427060)
-
(1998)
EMBO Journal
, vol.17
, Issue.18
, pp. 5466-5476
-
-
Newman, M.1
Lunnen, K.2
Wilson, G.3
Greci, J.4
Schildkraut, I.5
Phillips, S.E.V.6
-
83
-
-
34249862289
-
Topology of Type II REases revisited; structural classes and the common conserved core
-
DOI 10.1093/nar/gkm045
-
Niv MY, Ripoll DR, Vila JA, Liwo A, Vanamee ES, Aggarwal AK, Weinstein H, Scheraga HA (2007) Topology of type II REases revisited; structural classes and the common conserved core.Nucleic Acids Res 35:2227-2237 (Pubitemid 47073710)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.7
, pp. 2227-2237
-
-
Niv, M.Y.1
Ripoll, D.R.2
Vila, J.A.3
Liwo, A.4
Vanamee, E.S.5
Aggarwal, A.K.6
Weinstein, H.7
Scheraga, H.A.8
-
84
-
-
46349101158
-
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses
-
DOI 10.1093/nar/gkn175
-
Orlowski J, Bujnicki JM (2008) Structural and evolutionary classification of type II restriction enzymes based on theoretical and experimental analyses. Nucleic Acids Res 36:3552-3569 (Pubitemid 351917520)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.11
, pp. 3552-3569
-
-
Orlowski, J.1
Bujnicki, J.M.2
-
85
-
-
0032717110
-
DNA hydrolysis by inorganic catalysts
-
Ott R, Kramer R (1999) DNA hydrolysis by inorganic catalysts. Appl Microbiol Biotechnol 52:761-767
-
(1999)
Appl Microbiol Biotechnol
, vol.52
, pp. 761-767
-
-
Ott, R.1
Kramer, R.2
-
86
-
-
33749185724
-
TspMI, a thermostable isoschizomer of XmaI (5'C/CCGGG3'): Characterization and single molecule imaging with DNA
-
DOI 10.1007/s00253-006-0386-6
-
Parashar V, Capalash N, Xu S-Y, Sako Y, Sharma P (2006) TspMI, a thermostable isoschizomer of XmaI (5C/CCGGG3): characterization and single molecule imaging with DNA. Appl Microbiol Biotechnol 72:917-923 (Pubitemid 44477368)
-
(2006)
Applied Microbiology and Biotechnology
, vol.72
, Issue.5
, pp. 917-923
-
-
Parashar, V.1
Capalash, N.2
Xu, S.-Y.3
Sako, Y.4
Sharma, P.5
-
87
-
-
31744450975
-
Evolution of new protein topologies through multistep gene rearrangements
-
DOI 10.1038/ng1717, PII NG1717
-
Peisajovich SG, Rockah L, Tawfik DS (2006) Evolution of new protein topologies through multistep gene rearrangements. Nat Genet 38:168-174 (Pubitemid 43177229)
-
(2006)
Nature Genetics
, vol.38
, Issue.2
, pp. 168-174
-
-
Peisajovich, S.G.1
Rockah, L.2
Tawfik, D.S.3
-
88
-
-
0037134458
-
Evolutionary relationship between different subgroups of restriction endonucleases
-
DOI 10.1074/jbc.M111625200
-
Pingoud V, Kubareva E, Stengel G, Friedhoff P, Bujnicki JM, Urbanke C, Sudina A, Pingoud A (2002) Evolutionary relationship between different subgroups of restriction endonucleases. J Biol Chem 277:14306-14314 (Pubitemid 34968047)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.16
, pp. 14306-14314
-
-
Pingoud, V.1
Kubareva, E.2
Stengel, G.3
Friedhoff, P.4
Bujnicki, J.M.5
Urbanke, C.6
Sudina, A.7
Pingoud, A.8
-
90
-
-
70349229163
-
On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family
-
Pingoud V, Wende W, Friedhoff P, Reuter M, Alves J, Jeltsch A, Mones L, Fuxreiter M, Pingoud A, Wende W, Friedhoff P, Reuter M, Alves J, Jeltsch A, Mones L, Fuxreiter M, Pingoud A (2009)On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family. J Mol Biol 393:140-160
-
(2009)
J Mol Biol
, vol.393
, pp. 140-160
-
-
Pingoud, V.1
Wende, W.2
Friedhoff, P.3
Reuter, M.4
Alves, J.5
Jeltsch, A.6
Mones, L.7
Fuxreiter, M.8
Pingoud, A.9
Wende, W.10
Friedhoff, P.11
Reuter, M.12
Alves, J.13
Jeltsch, A.14
Mones, L.15
Fuxreiter, M.16
Pingoud, A.17
-
91
-
-
42949157474
-
Generation and analysis of mesophilic variants of the thermostable archaeal I-DmoI homing endonuclease
-
Prieto J, Epinat JC, Redondo P, Ramos E, Padró D, Cédrone F, Montoya G, Paques F, Blanco FJ (2008) Generation and analysis of mesophilic variants of the thermostable archaeal I-DmoI homing endonuclease. J Biol Chem 283:4364-4374
-
(2008)
J Biol Chem
, vol.283
, pp. 4364-4374
-
-
Prieto, J.1
Epinat, J.C.2
Redondo, P.3
Ramos, E.4
Padró, D.5
Cédrone, F.6
Montoya, G.7
Paques, F.8
Blanco, F.J.9
-
92
-
-
0023460924
-
NotI and SfiI: Restriction endonucleases with octanucleotide recognition sequences
-
Qiang BQ, Schildkraut I (1987) NotI and SfiI: restriction endonucleases with octanucleotide recognition sequences. Methods Enzymol 155:15-21
-
(1987)
Methods Enzymol
, vol.155
, pp. 15-21
-
-
Qiang, B.Q.1
Schildkraut, I.2
-
94
-
-
0029665163
-
Antisense oligonucleotides containing an internal, non-nucleotide-based linker promote site-specific cleavage of RNA
-
DOI 10.1093/nar/24.4.760
-
Reynolds MA, Beck TA, Say PB, Schwartz DA, Dwyer BP, Daily WJ, Vaghefi MM, Metzler MD, Klem RE, Arnold LJ (1996) Antisense oligonucleotide containing an internal, non-nucleotide-based linker promote site-specific cleavage of RNA. Nucleic Acids Res 24:760-765 (Pubitemid 26085853)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.4
, pp. 760-765
-
-
Reynolds, M.A.1
Beck, T.A.2
Say, P.B.3
Schwartz, D.A.4
Dwyer, B.P.5
Daily, W.J.6
Vaghefi, M.M.7
Metzler, M.D.8
Klem, R.E.9
Arnold Jr., L.J.10
-
95
-
-
0037459253
-
Engineering of restriction endonucleases: Using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity
-
Rimseliene R, Maneliene Z, Lubys A, Janulaitis A (2003) Engineering of restriction endonucleases: using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity. J Mol Biol 327:383-39
-
(2003)
J Mol Biol
, vol.327
, pp. 383-39
-
-
Rimseliene, R.1
Maneliene, Z.2
Lubys, A.3
Janulaitis, A.4
-
96
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
DOI 10.1093/nar/gkg274
-
Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, BlumenthalRM, Degtyarev SK, Dryden DTF, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Kruger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, RaoDN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JMB, Wilson GG, Xu SY (2003)A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res 31:1805-1812 (Pubitemid 36437486)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.7
, pp. 1805-1812
-
-
Roberts, J.R.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.Kh.8
Dryden, D.T.F.9
Dybvig, K.10
Firman, K.11
Gromova, E.S.12
Gumport, R.I.13
Halford, S.E.14
Hattman, S.15
Heitman, J.16
Hornby, D.P.17
Janulaitis, A.18
Jeltsch, A.19
Josephsen, J.20
Kiss, A.21
Klaenhammer, T.R.22
Kobayashi, I.23
Kong, H.24
Kruger, D.H.25
Lacks, S.26
Marinus, M.G.27
Miyahara, M.28
Morgan, R.D.29
Murray, N.E.30
Nagaraja, V.31
Piekarowicz, A.32
Pingoud, A.33
Raleigh, E.34
Rao, D.N.35
Reich, N.36
Repin, V.E.37
Selker, E.U.38
Shaw, P.-C.39
Stein, D.C.40
Stoddard, B.L.41
Szybalski, W.42
Trautner, T.A.43
Van Etten, J.L.44
Vitor, J.M.B.45
Wilson, G.G.46
Xu, S.-Y.47
more..
-
97
-
-
0023556856
-
Structure and function of the EcoRI restriction endonuclease
-
Rosenberg JM, McClarin JA, Frederick CA, Grable J, Boyer HW, Greene PJ (1987) Structure and function of the EcoRI restriction endonuclease. Gene Amplif Anal 5:119-145
-
(1987)
Gene Amplif Anal
, vol.5
, pp. 119-145
-
-
Rosenberg, J.M.1
McClarin, J.A.2
Frederick, C.A.3
Grable, J.4
Boyer, H.W.5
Greene, P.J.6
-
98
-
-
0036304570
-
Directed evolution of restriction endonuclease BstYI to achieve increased substrate specificity
-
DOI 10.1016/S0022-2836(02)00343-1
-
Samuelson JC, Xu SY (2002) Directed evolution of restriction endonuclease BstYI to achieve increased substrate specificity. J Mol Biol 319:673-683 (Pubitemid 34729442)
-
(2002)
Journal of Molecular Biology
, vol.319
, Issue.3
, pp. 673-683
-
-
Samuelson, J.C.1
Xu, S.-Y.2
-
99
-
-
84862648332
-
Alteration of restriction endonuclease specificity by genetic selection
-
Samuelson JC, Xu SY (2006) Alteration of restriction endonuclease specificity by genetic selection. US Patent 7052897
-
(2006)
US Patent
, pp. 7052897
-
-
Samuelson, J.C.1
Xu, S.Y.2
-
100
-
-
33644868063
-
Engineering a rare-cutting restriction enzyme: Genetic screening and selection of NotI variants
-
DOI 10.1093/nar/gkj483
-
Samuelson JC, Morgan RD, Benner JS, Claus TE, Packard SL, Xu SY (2006) Engineering a rare-cutting restriction enzyme: genetic screening and selection of NotI variants. Nucleic Acids Res 34:796-805 (Pubitemid 43380665)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.3
, pp. 796-805
-
-
Samuelson, J.C.1
Morgan, R.D.2
Benner, J.S.3
Claus, T.E.4
Packard, S.L.5
Xu, S.-Y.6
-
101
-
-
65549139378
-
Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
-
Sanders KL, Catto LE, Bellamy SRW, Halford SE (2009) Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands. Nucleic Acids Res 37:2105-2115
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2105-2115
-
-
Sanders, K.L.1
Catto, L.E.2
Bellamy, S.R.W.3
Halford, S.E.4
-
102
-
-
0034613269
-
Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium
-
Sapranauskas R, Sasnauskas G, Lagunavicius A, Vilkaitis G, Lubys A, Siksnys V (2000) Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium. J Biol Chem 275:30878-30885
-
(2000)
J Biol Chem
, vol.275
, pp. 30878-30885
-
-
Sapranauskas, R.1
Sasnauskas, G.2
Lagunavicius, A.3
Vilkaitis, G.4
Lubys, A.5
Siksnys, V.6
-
104
-
-
48749094277
-
Evolution of sequence specificity in a restriction endonuclease by a point mutation
-
Saravanan M, Vasu K, Nagaraja V (2008) Evolution of sequence specificity in a restriction endonuclease by a point mutation. Proc Natl Acad Sci USA 105:10344-10347
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 10344-10347
-
-
Saravanan, M.1
Vasu, K.2
Nagaraja, V.3
-
105
-
-
47249110360
-
Template-directed addition of nucleosides to DNA by the BfiI restriction enzyme
-
DOI 10.1093/nar/gkn343
-
Sasnauskas G, Connolly BA, Halford SE, Siksnys V (2008) Templatedirected addition of nucleosides to DNA by the BfiI restriction enzyme. Nucleic Acids Res 36:3969-3977 (Pubitemid 351984813)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.12
, pp. 3969-3977
-
-
Sasnauskas, G.1
Connolly, B.A.2
Halford, S.E.3
Siksnys, V.4
-
106
-
-
0035946978
-
Covalent joining of the subunits of a homodimeric type II restriction endonuclease: Single-chain PvuII endonuclease
-
DOI 10.1006/jmbi.2001.4651
-
Simoncsits A, Tjornhammar ML, Rasko T, Kiss A, Pongor S (2001)Covalent joining of the subunits of a homodimeric type II restriction endonuclease: single-chain PvuII endonuclease. J Mol Biol 309:89-97 (Pubitemid 32553510)
-
(2001)
Journal of Molecular Biology
, vol.309
, Issue.1
, pp. 89-97
-
-
Simoncsits, A.1
Tjornhammar, M.-L.2
Rasko, T.3
Kiss, A.4
Pongor, S.5
-
107
-
-
67649663920
-
In silico analysis of evolutionary patterns in restriction endonucleases
-
Singh TR, Pardasani KR (2009) In silico analysis of evolutionary patterns in restriction endonucleases. In Silico Biol 9:45-53
-
(2009)
Silico Biol
, vol.9
, pp. 45-53
-
-
Singh, T.R.1
Pardasani, K.R.2
-
108
-
-
67649888360
-
Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA
-
Sokolowska M, Czapinska H, Bochtler M (2009) Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA. Nucleic Acids Res 37:3799-3810
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3799-3810
-
-
Sokolowska, M.1
Czapinska, H.2
Bochtler, M.3
-
109
-
-
84862654968
-
A novel zinc finger nuclease and uses thereof
-
Soo KJ, Joo KH (2010) A novel zinc finger nuclease and uses thereof.WO Patent 076939
-
(2010)
WO Patent
, pp. 076939
-
-
Soo, K.J.1
Joo, K.H.2
-
110
-
-
33644756595
-
Homing endonuclease structure and function
-
DOI 10.1017/S0033583505004063, PII S0033583505004063
-
Stoddard BL (2005) Homing endonuclease structure and function. Q Rev Biophys 38:49-95 (Pubitemid 43338672)
-
(2005)
Quarterly Reviews of Biophysics
, vol.38
, Issue.1
, pp. 49-95
-
-
Stoddard, B.L.1
-
111
-
-
84857237734
-
Universal restriction endonuclease
-
Szybalski W (1990) Universal restriction endonuclease. US Patent 4935357
-
(1990)
US Patent
, pp. 4935357
-
-
Szybalski, W.1
-
112
-
-
57349095233
-
In vivo DNA protection by relaxed-specificity SinI DNA methyltransferase variants
-
Timar E, Venetianer P, Kiss A (2008) In vivo DNA protection by relaxed-specificity SinI DNA methyltransferase variants. J Bacteriol 190:8003-8008
-
(2008)
J Bacteriol
, vol.190
, pp. 8003-8008
-
-
Timar, E.1
Venetianer, P.2
Kiss, A.3
-
113
-
-
77950364053
-
Engineering Nt.BtsCI and Nb.BtsCI nicking enzymes and applications in generating long overhangs
-
Too PHM, Zhu Z, Chan SH, Xu SY (2010) Engineering Nt.BtsCI and Nb.BtsCI nicking enzymes and applications in generating long overhangs. Nucleic Acids Res 38:1294-1303
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1294-1303
-
-
Too, P.H.M.1
Zhu, Z.2
Chan, S.H.3
Xu, S.Y.4
-
114
-
-
0001229651
-
Inorganic mimics of ribonucleases and ribozymes: From random cleavage to sequence-specific chemistry to catalytic antisense drugs
-
Trawick BN, Daniher AT, Bashkin JK (1998) Inorganic mimics of ribonucleases and ribozymes: from random cleavage to sequence-specific chemistry to catalytic antisense drugs. Chem Rev 98:939-960 (Pubitemid 128632232)
-
(1998)
Chemical Reviews
, vol.98
, Issue.3
, pp. 939-960
-
-
Trawick, B.N.1
Daniher, A.T.2
Bashkin, J.K.3
-
115
-
-
34547554093
-
Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains
-
DOI 10.1073/pnas.0610365104
-
Urbanaviciene JS, Serksnaite J, Kriukiene E, Giedriene J, Venclovas C, Lubys A (2007) Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains. Proc Natl Acad Sci USA 104:10358-10336 (Pubitemid 47185670)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.25
, pp. 10358-10363
-
-
Jurenaite-Urbanaviciene, S.1
Serksnaite, J.2
Kriukiene, E.3
Giedriene, J.4
Venclovas, C.5
Lubys, A.6
-
116
-
-
18944373328
-
Highly efficient endogenous human gene correction using designed zinc-finger nucleases
-
DOI 10.1038/nature03556
-
Urnov FD, Miller JC, Lee YL, Beausejour CM, Rock JM, Augustus S, Jamieson AC, Porteus MH, Gregory PD, Holmes MC (2005)Highly efficient endogenous human gene correction using designed zinc-finger nucleases. Nature 435:646-651 (Pubitemid 40825505)
-
(2005)
Nature
, vol.435
, Issue.7042
, pp. 646-651
-
-
Urnov, F.D.1
Miller, J.C.2
Lee, Y.-L.3
Beausejour, C.M.4
Rock, J.M.5
Augustus, S.6
Jamieson, A.C.7
Porteus, M.H.8
Gregory, P.D.9
Holmes, M.C.10
-
117
-
-
0035163930
-
Discovery and distribution of super-integrons among pseudomonads
-
DOI 10.1046/j.1365-2958.2001.02604.x
-
Vaisvila R, Morgan RD, Posfai J, Raleigh EA (2001) Discovery and distribution of super-integrons among pseudomonads. Mol Microbiol 42:587-601 (Pubitemid 33064472)
-
(2001)
Molecular Microbiology
, vol.42
, Issue.3
, pp. 587-601
-
-
Vaisvila, R.1
Morgan, R.D.2
Posfai, J.3
Raleigh, E.A.4
-
118
-
-
77957023154
-
Generation of a manganese specific restriction endonuclease with nicking activity
-
Vasu K, Saravanan M, Rajendra BV, Nagaraja V (2010) Generation of a manganese specific restriction endonuclease with nicking activity.Biochemistry 49:8425-8433
-
(2010)
Biochemistry
, vol.49
, pp. 8425-8433
-
-
Vasu, K.1
Saravanan, M.2
Rajendra, B.V.3
Nagaraja, V.4
-
119
-
-
0028172810
-
Five-stranded β-sheet sandwiched with two α-helices: A structural link between restriction endonucleases EcoRI and EcoRV
-
DOI 10.1002/prot.340200308
-
Venclovas C, Timinskas A, Siksnys V (1994) Five-stranded beta-sheet sandwiched with two alpha-helices: a structural link between restriction endonucleases EcoRI and EcoRV. Proteins 20:279-282 (Pubitemid 24378918)
-
(1994)
Proteins: Structure, Function and Genetics
, vol.20
, Issue.3
, pp. 279-282
-
-
Venclovas, C.1
Timinskas, A.2
Siksnys, V.3
-
120
-
-
0030981918
-
Sequence-specific cleavage of yeast tRNA(Phe) with oligonucleotides conjugated to a diimidazole construct
-
Vlassov V, Abramova T, Godovikova T, Giege R, Silnikov V (1997)Sequence-specific cleavage of yeast tRNA (Phe) with oligonucleotides conjugated to a diimidazole construct. Antisense Nucleic Acid Drug Dev 7:39-42 (Pubitemid 27132657)
-
(1997)
Antisense and Nucleic Acid Drug Development
, vol.7
, Issue.1
, pp. 39-42
-
-
Vlassov, V.1
Abramova, T.2
Godovikova, T.3
Giege, R.4
Silnikov, V.5
-
121
-
-
0033614013
-
A mutant of BamHI restriction endonuclease which requires N6-methyladenine for cleavage
-
DOI 10.1006/jmbi.1998.2409
-
Whitaker RD, Dorner LF, Schildkraut I (1999) A mutant of BamHI restriction endonuclease which requires N6-methyladenine for cleavage. J Mol Biol 285:1525-1536 (Pubitemid 29060453)
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.4
, pp. 1525-1536
-
-
Whitaker, R.D.1
Dorner, L.F.2
Schildkraut, I.3
-
122
-
-
33646008874
-
N6-methyl-adenine: An epigenetic signal for DNA-protein interactions
-
Wion D, Casadesus J (2006) N6-methyl-adenine: an epigenetic signal for DNA-protein interactions. Nat Rev Microbiol 4:183-192
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 183-192
-
-
Wion, D.1
Casadesus, J.2
-
123
-
-
33847371186
-
Rapid DNA mapping by fluorescent single molecule detection
-
Xiao M, Phong A, Ha C, Chan TF, Cai D, Leung L, Wan E, Kistler AL, DeRisi JL, Selvin PR, Kwok PY (2007) Rapid DNA mapping by fluorescent single molecule detection. Nucleic Acids Res 35:e16
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Xiao, M.1
Phong, A.2
Ha, C.3
Chan, T.F.4
Cai, D.5
Leung, L.6
Wan, E.7
Kistler, A.L.8
DeRisi, J.L.9
Selvin, P.R.10
Kwok, P.Y.11
-
125
-
-
34547888748
-
Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI
-
DOI 10.1093/nar/gkm481
-
Xu SY, Zhu Z, Zhang P, Chan SH, Samuelson JC, Xiao J, Ingalls D, Wilson GG (2007) Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI. Nucleic Acids Res 35:4608-4618 (Pubitemid 47260295)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.14
, pp. 4608-4618
-
-
Xu, S.-Y.1
Zhu, Z.2
Zhang, P.3
Chan, S.-H.4
Samuelson, J.C.5
Xiao, J.6
Ingalls, D.7
Wilson, G.G.8
-
127
-
-
74849085905
-
Nicking endonucleases
-
Zheleznaya LA, Kachalova GS, Artyukh RI, Yunusova AK, Perevyazova TA, Matvienko NI (2009) Nicking endonucleases. Biochemistry 74:1457-1466
-
(2009)
Biochemistry
, vol.74
, pp. 1457-1466
-
-
Zheleznaya, L.A.1
Kachalova, G.S.2
Artyukh, R.I.3
Yunusova, A.K.4
Perevyazova, T.A.5
Matvienko, N.I.6
-
128
-
-
1542268955
-
Engineering strand-specific DNA nicking enzymes from the Type IIS Restriction Endonucleases BsaI, BsmBI, and BsmAI
-
DOI 10.1016/j.jmb.2004.02.003, PII S0022283604001378
-
Zhu Z, Samuelson JC, Zhou J, Dore A, Xu SY (2004) Engineering strand-specific DNA nicking enzymes from the type IIS restriction endonucleases BsaI, BsmBI, and BsmAI. J Mol Biol 337:573-583 (Pubitemid 38326878)
-
(2004)
Journal of Molecular Biology
, vol.337
, Issue.3
, pp. 573-583
-
-
Zhu, Z.1
Samuelson, J.C.2
Zhou, J.3
Dore, A.4
Xu, S.-Y.5
-
129
-
-
84862697115
-
High fidelity restriction endonucleases
-
Zhu Z, Aine B, Xu SY, Shengxi G, Hua W, Penghua Z, Dapeng S, Siuhong C (2009) High fidelity restriction endonucleases. US Patent 20090029376
-
(2009)
US Patent
, pp. 20090029376
-
-
Zhu, Z.1
Aine, B.2
Xu, S.Y.3
Shengxi, G.4
Hua, W.5
Penghua, Z.6
Dapeng, S.7
Siuhong, C.8
-
130
-
-
84862648333
-
Engineering a novel methylationspecific restriction endonuclease
-
Zhu Z, Guan S, Blanchard A (2010) Engineering a novel methylationspecific restriction endonuclease, WO Patent 2010104737
-
(2010)
WO Patent
, pp. 2010104737
-
-
Zhu, Z.1
Guan, S.2
Blanchard, A.3
|