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Volumn 190, Issue 24, 2008, Pages 8003-8008

In vivo DNA protection by relaxed-specificity SinI DNA methyltransferase variants

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; ENZYME VARIANT; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; RESTRICTION ENDONUCLEASE; SAU96I ENZYME; SINI ENZYME; UNCLASSIFIED DRUG;

EID: 57349095233     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00754-08     Document Type: Article
Times cited : (9)

References (42)
  • 1
    • 0023448447 scopus 로고
    • Construction and use of chimeric SPR/phi3T DNA methyltransferases in the definition of sequence recognizing enzyme regions
    • Balganesh, T. S., L. Reiners, R. Lauster, M. Noyer-Weidner, K. Wilke, and T. A. Trautner. 1987. Construction and use of chimeric SPR/phi3T DNA methyltransferases in the definition of sequence recognizing enzyme regions. EMBO J. 6:3543-3549.
    • (1987) EMBO J , vol.6 , pp. 3543-3549
    • Balganesh, T.S.1    Reiners, L.2    Lauster, R.3    Noyer-Weidner, M.4    Wilke, K.5    Trautner, T.A.6
  • 2
    • 0023464709 scopus 로고
    • A genetic system for isolation and characterization of TaqI restriction endonuclease mutants
    • Barany, F. 1987. A genetic system for isolation and characterization of TaqI restriction endonuclease mutants. Gene 56:13-27.
    • (1987) Gene , vol.56 , pp. 13-27
    • Barany, F.1
  • 3
    • 0023816268 scopus 로고
    • Cloning and sequencing the HinfI restriction and modification genes
    • Chandrasegaran, S., K. D. Lunnen, H. O. Smith, and G. G. Wilson. 1988. Cloning and sequencing the HinfI restriction and modification genes. Gene 70:387-392.
    • (1988) Gene , vol.70 , pp. 387-392
    • Chandrasegaran, S.1    Lunnen, K.D.2    Smith, H.O.3    Wilson, G.G.4
  • 4
    • 0026316928 scopus 로고
    • Direct identification of the active-site nucleophile in a DNA (cytosine-5)-methyltransferase
    • Chen, L., A. M. MacMillan, W. Chang, K. Ezaz-Nikpay, W. S. Lane, and G. L. Verdine. 1991. Direct identification of the active-site nucleophile in a DNA (cytosine-5)-methyltransferase. Biochemistry 30:11018-11025.
    • (1991) Biochemistry , vol.30 , pp. 11018-11025
    • Chen, L.1    MacMillan, A.M.2    Chang, W.3    Ezaz-Nikpay, K.4    Lane, W.S.5    Verdine, G.L.6
  • 5
    • 0842313326 scopus 로고    scopus 로고
    • Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization
    • Cohen, H. M., D. S. Tawfik, and A. D. Griffiths. 2004. Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization. Prot. Eng. Des. Sel. 17:3-11.
    • (2004) Prot. Eng. Des. Sel , vol.17 , pp. 3-11
    • Cohen, H.M.1    Tawfik, D.S.2    Griffiths, A.D.3
  • 6
    • 0028240186 scopus 로고
    • The 'endo-blue method' for direct cloning of restriction endonuclease genes in E. coli
    • Fomenkov, A., J. P. Xiao, D. Dila, E. Raleigh, and S. Y. Xu. 1994. The 'endo-blue method' for direct cloning of restriction endonuclease genes in E. coli. Nucleic Acids Res. 22:2399-2403.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2399-2403
    • Fomenkov, A.1    Xiao, J.P.2    Dila, D.3    Raleigh, E.4    Xu, S.Y.5
  • 7
    • 0020688831 scopus 로고
    • Cloned restriction/modification system from Pseudomonas aeruginosa
    • Gingeras, T. R., and J. E. Brooks. 1983. Cloned restriction/modification system from Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 80:402-406.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 402-406
    • Gingeras, T.R.1    Brooks, J.E.2
  • 8
    • 0015836893 scopus 로고
    • Genetics and function of DNA ligase in Escherichia coli
    • Gottesman, M. M., M. L. Hicks, and M. Gellert. 1973. Genetics and function of DNA ligase in Escherichia coli. J. Mol. Biol. 77:531-547.
    • (1973) J. Mol. Biol , vol.77 , pp. 531-547
    • Gottesman, M.M.1    Hicks, M.L.2    Gellert, M.3
  • 9
    • 0025295967 scopus 로고
    • Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants
    • Grant, S. G., J. Jessee, F. R. Bloom, and D. Hanahan. 1990. Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc. Natl. Acad. Sci. USA 87:4645-4649.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4645-4649
    • Grant, S.G.1    Jessee, J.2    Bloom, F.R.3    Hanahan, D.4
  • 10
    • 0029018327 scopus 로고
    • Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
    • Guzman, L. M., D. Belin, M. J. Carson, and J. Beckwith. 1995. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J. Bacteriol. 177:4121-4130.
    • (1995) J. Bacteriol , vol.177 , pp. 4121-4130
    • Guzman, L.M.1    Belin, D.2    Carson, M.J.3    Beckwith, J.4
  • 11
    • 0025171673 scopus 로고
    • Mutants of the EcoRI endonuclease with promiscuous substrate specificity implicate residues involved in substrate recognition
    • Heitman, J., and P. Model. 1990. Mutants of the EcoRI endonuclease with promiscuous substrate specificity implicate residues involved in substrate recognition. EMBO J. 9:3369-3378.
    • (1990) EMBO J , vol.9 , pp. 3369-3378
    • Heitman, J.1    Model, P.2
  • 12
    • 0010697814 scopus 로고
    • Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease
    • Heitman, J., N. D. Zinder, and P. Model. 1989. Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease. Proc. Natl. Acad. Sci. USA 86:2281-2285.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2281-2285
    • Heitman, J.1    Zinder, N.D.2    Model, P.3
  • 13
    • 0022557540 scopus 로고
    • Nucleotide sequence of the lig gene and primary structure of DNA ligase of Escherichia coli
    • Ishino, Y., H. Shinagawa, K. Makino, S. Tsunasawa, F. Sakiyama, and A. Nakata. 1986. Nucleotide sequence of the lig gene and primary structure of DNA ligase of Escherichia coli. Mol. Gen. Genet. 204:1-7.
    • (1986) Mol. Gen. Genet , vol.204 , pp. 1-7
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Tsunasawa, S.4    Sakiyama, F.5    Nakata, A.6
  • 14
    • 0037007175 scopus 로고    scopus 로고
    • Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases
    • Jeltsch, A. 2002. Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases. ChemBioChem 3:274-293.
    • (2002) ChemBioChem , vol.3 , pp. 274-293
    • Jeltsch, A.1
  • 15
    • 0024022277 scopus 로고
    • Cloning and complete nucleotide sequences of the type II restriction-modification genes of Salmonella infantis
    • Karreman, C., and A. de Waard. 1988. Cloning and complete nucleotide sequences of the type II restriction-modification genes of Salmonella infantis. J. Bacteriol. 170:2527-2532.
    • (1988) J. Bacteriol , vol.170 , pp. 2527-2532
    • Karreman, C.1    de Waard, A.2
  • 16
    • 0024025052 scopus 로고
    • Isolation and characterization of the modification methylase M.SinI
    • Karreman, C., and A. de Waard. 1988. Isolation and characterization of the modification methylase M.SinI. J. Bacteriol. 170:2533-2536.
    • (1988) J. Bacteriol , vol.170 , pp. 2533-2536
    • Karreman, C.1    de Waard, A.2
  • 17
    • 0035216867 scopus 로고    scopus 로고
    • Homogeneous expression of the PBAD promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter
    • Khlebnikov, A., K. A. Datsenko, T. Skaug, B. L. Wanner, and J. D. Keasling. 2001. Homogeneous expression of the PBAD promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter. Microbiology 147:3241-3247.
    • (2001) Microbiology , vol.147 , pp. 3241-3247
    • Khlebnikov, A.1    Datsenko, K.A.2    Skaug, T.3    Wanner, B.L.4    Keasling, J.D.5
  • 18
    • 0035420651 scopus 로고    scopus 로고
    • Kiss, A., G. Pósfai, G. Zsurka, T. Raskó, and P. Venetianer. 2001. Role of DNA minor groove interactions in substrate recognition by the M.SinI and M.EcoRII DNA (cytosine-5) methyltransferases. Nucleic Acids Res. 29:3188-3194.
    • Kiss, A., G. Pósfai, G. Zsurka, T. Raskó, and P. Venetianer. 2001. Role of DNA minor groove interactions in substrate recognition by the M.SinI and M.EcoRII DNA (cytosine-5) methyltransferases. Nucleic Acids Res. 29:3188-3194.
  • 19
    • 0028010888 scopus 로고
    • HhaI methyltransferase flips its target base out of the DNA helix
    • Klimasauskas, S., S. Kumar, R. J. Roberts, and X. Cheng. 1994. HhaI methyltransferase flips its target base out of the DNA helix. Cell 76:357-369.
    • (1994) Cell , vol.76 , pp. 357-369
    • Klimasauskas, S.1    Kumar, S.2    Roberts, R.J.3    Cheng, X.4
  • 20
    • 0026048797 scopus 로고
    • The sequence specificity domain of cytosine-C5 methylases
    • Klimasauskas, S., J. L. Nelson, and R. J. Roberts. 1991. The sequence specificity domain of cytosine-C5 methylases. Nucleic Acids Res. 19:6183-6190.
    • (1991) Nucleic Acids Res , vol.19 , pp. 6183-6190
    • Klimasauskas, S.1    Nelson, J.L.2    Roberts, R.J.3
  • 22
    • 0037112614 scopus 로고    scopus 로고
    • Investigating the target recognition of DNA cytosine-5 methyltransferase HhaI by library selection using in vitro compartmentalisation
    • Lee, Y. F., D. S. Tawfik, and A. D. Griffiths. 2002. Investigating the target recognition of DNA cytosine-5 methyltransferase HhaI by library selection using in vitro compartmentalisation. Nucleic Acids Res. 30:4937-4944.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4937-4944
    • Lee, Y.F.1    Tawfik, D.S.2    Griffiths, A.D.3
  • 23
    • 0024596469 scopus 로고
    • Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei
    • Lunnen, K. D., R. D. Morgan, C. J. Timan, J. A. Krzycki, J. N. Reeve, and G. G. Wilson. 1989. Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei. Gene 77:11-19.
    • (1989) Gene , vol.77 , pp. 11-19
    • Lunnen, K.D.1    Morgan, R.D.2    Timan, C.J.3    Krzycki, J.A.4    Reeve, J.N.5    Wilson, G.G.6
  • 24
    • 0025074622 scopus 로고
    • Cloning and expression in Escherichia coli of the BanI and BanIII restriction-modification systems from Bacillus aneurinolyticus
    • Maekawa, Y., and B. Kawakami. 1990. Cloning and expression in Escherichia coli of the BanI and BanIII restriction-modification systems from Bacillus aneurinolyticus. J. Ferment. Bioeng. 69:195-198.
    • (1990) J. Ferment. Bioeng , vol.69 , pp. 195-198
    • Maekawa, Y.1    Kawakami, B.2
  • 25
    • 0024459035 scopus 로고
    • Single amino acid changes that alter the DNA sequence specificity of the DNA-[N6-adenine] methyltransferase (Dam) of bacteriophage T4
    • Miner, Z., S. L. Schlagman, and S. Hattman. 1989. Single amino acid changes that alter the DNA sequence specificity of the DNA-[N6-adenine] methyltransferase (Dam) of bacteriophage T4. Nucleic Acids Res. 17:8149-8157.
    • (1989) Nucleic Acids Res , vol.17 , pp. 8149-8157
    • Miner, Z.1    Schlagman, S.L.2    Hattman, S.3
  • 26
    • 0030860064 scopus 로고    scopus 로고
    • Versatile insertion plasmids for targeted genome manipulations in bacteria: Isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome
    • Pósfai, G., M. D. Koob, H. A. Kirkpatrick, and F. R. Blattner. 1997. Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome. J. Bacteriol. 179:4426-4428.
    • (1997) J. Bacteriol , vol.179 , pp. 4426-4428
    • Pósfai, G.1    Koob, M.D.2    Kirkpatrick, H.A.3    Blattner, F.R.4
  • 27
    • 0024604147 scopus 로고
    • Predictive motifs derived from cytosine methyltransferases
    • Pósfai, J., A. S. Bhagwat, G. Pósfai, and R. J. Roberts. 1989. Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res. 17:2421-2435.
    • (1989) Nucleic Acids Res , vol.17 , pp. 2421-2435
    • Pósfai, J.1    Bhagwat, A.S.2    Pósfai, G.3    Roberts, R.J.4
  • 28
    • 0022872027 scopus 로고
    • Escherichia coli K-12 restricts DNA containing 5-methylcytosine
    • Raleigh, E. A., and G. Wilson. 1986. Escherichia coli K-12 restricts DNA containing 5-methylcytosine. Proc. Natl. Acad. Sci. USA 83:9070-9074.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 9070-9074
    • Raleigh, E.A.1    Wilson, G.2
  • 29
    • 0029068629 scopus 로고
    • The crystal structure of HaeIII methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing
    • Reinisch, K. M., L. Chen, G. L. Verdine, and W. N. Lipscomb. 1995. The crystal structure of HaeIII methyltransferase covalently complexed to DNA: an extrahelical cytosine and rearranged base pairing. Cell 82:143-153.
    • (1995) Cell , vol.82 , pp. 143-153
    • Reinisch, K.M.1    Chen, L.2    Verdine, G.L.3    Lipscomb, W.N.4
  • 30
    • 0037459253 scopus 로고    scopus 로고
    • Engineering of restriction endonucleases: Using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity
    • Rimseliene, R., Z. Maneliene, A. Lubys, and A. Janulaitis. 2003. Engineering of restriction endonucleases: using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity. J. Mol. Biol. 327:383-391.
    • (2003) J. Mol. Biol , vol.327 , pp. 383-391
    • Rimseliene, R.1    Maneliene, Z.2    Lubys, A.3    Janulaitis, A.4
  • 31
    • 0037389511 scopus 로고    scopus 로고
    • Roberts, R. J., M. Belfort, T. Bestor, A. S. Bhagwat, T. A. Bickle, J. Bitinaite, R. M. Blumenthal, S. Degtyarev, D. T. Dryden, K. Dybvig, K. Firman, E. S. Gromova, R. I. Gumport, S. E. Halford, S. Hattman, J. Heitman, D. P. Hornby, A. Janulaitis, A. Jeltsch, J. Josephsen, A. Kiss, T. R. Klaenhammer, I. Kobayashi, H. Kong, D. H. Kruger, S. Lacks, M. G. Marinus, M. Miyahara, R. D. Morgan, N. E. Murray, V. Nagaraja, A. Piekarowicz, A. Pingoud, E. Raleigh, D. N. Rao, N. Reich, V. E. Repin, E. U. Selker, P. C. Shaw, D. C. Stein, B. L. Stoddard, W. Szybalski, T. A. Trautner, J. L. Van Etten, J. M. Vitor, G. G. Wilson, and S. Y. Xu. 2003. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res. 31:1805-1812.
    • Roberts, R. J., M. Belfort, T. Bestor, A. S. Bhagwat, T. A. Bickle, J. Bitinaite, R. M. Blumenthal, S. Degtyarev, D. T. Dryden, K. Dybvig, K. Firman, E. S. Gromova, R. I. Gumport, S. E. Halford, S. Hattman, J. Heitman, D. P. Hornby, A. Janulaitis, A. Jeltsch, J. Josephsen, A. Kiss, T. R. Klaenhammer, I. Kobayashi, H. Kong, D. H. Kruger, S. Lacks, M. G. Marinus, M. Miyahara, R. D. Morgan, N. E. Murray, V. Nagaraja, A. Piekarowicz, A. Pingoud, E. Raleigh, D. N. Rao, N. Reich, V. E. Repin, E. U. Selker, P. C. Shaw, D. C. Stein, B. L. Stoddard, W. Szybalski, T. A. Trautner, J. L. Van Etten, J. M. Vitor, G. G. Wilson, and S. Y. Xu. 2003. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res. 31:1805-1812.
  • 32
    • 0035419349 scopus 로고    scopus 로고
    • Changing the target base specificity of the EcoRV DNA methyltransferase by rational de novo protein-design
    • Roth, M., and A. Jeltsch. 2001. Changing the target base specificity of the EcoRV DNA methyltransferase by rational de novo protein-design. Nucleic Acids Res. 29:3137-3144.
    • (2001) Nucleic Acids Res , vol.29 , pp. 3137-3144
    • Roth, M.1    Jeltsch, A.2
  • 36
    • 0026457790 scopus 로고
    • Cloning and characterization of genes for the PvuI restriction and modification system
    • Smith, M. D., M. Longo, G. F. Gerard, and D. K. Chatterjee. 1992. Cloning and characterization of genes for the PvuI restriction and modification system. Nucleic Acids Res. 20:5743-5747.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5743-5747
    • Smith, M.D.1    Longo, M.2    Gerard, G.F.3    Chatterjee, D.K.4
  • 37
    • 0025126596 scopus 로고
    • Cloning and nucleotide sequence of the genes coding for the Sau96I restriction and modification enzymes
    • Szilák, L., P. Venetianer, and A. Kiss. 1990. Cloning and nucleotide sequence of the genes coding for the Sau96I restriction and modification enzymes. Nucleic Acids Res. 18:4659-4664.
    • (1990) Nucleic Acids Res , vol.18 , pp. 4659-4664
    • Szilák, L.1    Venetianer, P.2    Kiss, A.3
  • 38
    • 4444361240 scopus 로고    scopus 로고
    • Changing the recognition specificity of a DNA-methyltransferase by in vitro evolution
    • Tímár, E., G. Groma, A. Kiss, and P. Venetianer. 2004. Changing the recognition specificity of a DNA-methyltransferase by in vitro evolution. Nucleic Acids Res. 32:3898-3903.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3898-3903
    • Tímár, E.1    Groma, G.2    Kiss, A.3    Venetianer, P.4
  • 39
    • 0025738319 scopus 로고
    • Cloning the BstVI restriction-modification system in Escherichia coli
    • Vasquez, C., C. Saavedra, and E. Gonzalez. 1991. Cloning the BstVI restriction-modification system in Escherichia coli. Gene 102:83-85.
    • (1991) Gene , vol.102 , pp. 83-85
    • Vasquez, C.1    Saavedra, C.2    Gonzalez, E.3
  • 40
    • 0025809486 scopus 로고
    • New pUC-derived cloning vectors with different selectable markers and DNA replication origins
    • Vieira, J., and J. Messing. 1991. New pUC-derived cloning vectors with different selectable markers and DNA replication origins. Gene 100:189-194.
    • (1991) Gene , vol.100 , pp. 189-194
    • Vieira, J.1    Messing, J.2
  • 42
    • 0023176797 scopus 로고
    • Kinetic and catalytic mechanism of HhaI methyltransferase
    • Wu, J. C., and D. V. Santi. 1987. Kinetic and catalytic mechanism of HhaI methyltransferase. J. Biol. Chem. 262:4778-4786.
    • (1987) J. Biol. Chem , vol.262 , pp. 4778-4786
    • Wu, J.C.1    Santi, D.V.2


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