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Volumn 39, Issue 9, 2011, Pages 3949-3961

Recognition of an expanded genetic alphabet by type-II restriction endonucleases and their application to analyze polymerase fidelity

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

EID: 79955984480     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq1274     Document Type: Article
Times cited : (25)

References (20)
  • 1
    • 17044403057 scopus 로고    scopus 로고
    • Type II restriction endonucleases: Structure and mechanism
    • Pingoud, A., Fuxreiter, M., Pingoud, V. and Wende, W. (2005) Type II restriction endonucleases: structure and mechanism. Cell. Mol. Life Sci., 62, 685-707.
    • (2005) Cell. Mol. Life Sci. , vol.62 , pp. 685-707
    • Pingoud, A.1    Fuxreiter, M.2    Pingoud, V.3    Wende, W.4
  • 2
    • 75549086595 scopus 로고    scopus 로고
    • REBASE-A database for DNA restriction and modification: Enzymes, genes and genomes
    • Database issue
    • Roberts, R.J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38(Database issue), D234-D236.
    • (2010) Nucleic Acids Res. , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    MacElis, D.4
  • 3
    • 0025008851 scopus 로고
    • Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet
    • Piccirilli, J.A., Krauch, T., Moroney, S.E. and Benner, S.A. (1990) Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet. Nature, 343, 33-37.
    • (1990) Nature , vol.343 , pp. 33-37
    • Piccirilli, J.A.1    Krauch, T.2    Moroney, S.E.3    Benner, S.A.4
  • 4
    • 6944225455 scopus 로고    scopus 로고
    • Understanding nucleic acids using synthetic chemistry
    • Benner, S.A. (2004) Understanding nucleic acids using synthetic chemistry. Acc. Chem. Res., 37, 784-797.
    • (2004) Acc. Chem. Res. , vol.37 , pp. 784-797
    • Benner, S.A.1
  • 5
    • 1342327652 scopus 로고    scopus 로고
    • PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from human immunodeficiency virus-1
    • DOI 10.1093/nar/gkh241
    • Sismour, A.M., Lutz, S., Park, J.H., Lutz, M.J., Boyer, P.L., Hughes, S.H. and Benner, S.A. (2004) PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from human immunodeficiency virus-1. Nucleic Acids Res., 32, 728-735. (Pubitemid 38263064)
    • (2004) Nucleic Acids Research , vol.32 , Issue.2 , pp. 728-735
    • Sismour, A.M.1    Lutz, S.2    Park, J.-H.3    Lutz, M.J.4    Boyer, P.L.5    Hughes, S.H.6    Benner, S.A.7
  • 6
    • 0142150157 scopus 로고    scopus 로고
    • Synthetic biology with artificially expanded genetic information systems. from personalized medicine to extraterrestrial life
    • Benner, S.A., Hutter, D. and Sismour, A.M. (2003) Synthetic biology with artificially expanded genetic information systems. From personalized medicine to extraterrestrial life. Nucleic Acids Res., 3(Suppl.), 125-126.
    • (2003) Nucleic Acids Res. , vol.3 , Issue.SUPPL. , pp. 125-126
    • Benner, S.A.1    Hutter, D.2    Sismour, A.M.3
  • 7
    • 38949196471 scopus 로고    scopus 로고
    • Incorporation of multiple sequential pseudothymidines by DNA polymerases and their impact on DNA duplex structure
    • DOI 10.1080/15257770701853679, PII 790491704
    • Havemann, S.A., Hoshika, S., Hutter, D. and Benner, S.A. (2008) Incorporation of multiple sequential pseudothymidines by DNA polymerases and their impact on DNA duplex structure. Nucleosides Nucleotides Nucleic Acids, 27, 261-278. (Pubitemid 351220656)
    • (2008) Nucleosides, Nucleotides and Nucleic Acids , vol.27 , Issue.3 , pp. 261-278
    • Havemann, S.A.1    Hoshika, S.2    Hutter, D.3    Benner, S.A.4
  • 8
    • 0029045480 scopus 로고
    • Recognition by viral and cellular DNA polymerases of nucleosides bearing bases with nonstandard hydrogen bonding patterns
    • Horlacher, J., Hottiger, M., Podust, V.N., Hübscher, U. and Benner, S.A. (1995) Recognition by viral and cellular DNA polymerases of nucleosides bearing bases with nonstandard hydrogen bonding patterns. Proc. Natl Acad. Sci. USA, 92, 6329-6333.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 6329-6333
    • Horlacher, J.1    Hottiger, M.2    Podust, V.N.3    Hübscher, U.4    Benner, S.A.5
  • 9
    • 34547843669 scopus 로고    scopus 로고
    • Enzymatic incorporation of a third nucleobase pair
    • DOI 10.1093/nar/gkm395
    • Yang, Z., Sismour, A.M., Sheng, P., Puskar, N.L. and Benner, S.A. (2007) Enzymatic incorporation of a third nucleobase pair. Nucleic Acids Res., 35, 4238-4249. (Pubitemid 47244580)
    • (2007) Nucleic Acids Research , vol.35 , Issue.13 , pp. 4238-4249
    • Yang, Z.1    Sismour, A.M.2    Sheng, P.3    Puskar, N.L.4    Benner, S.A.5
  • 10
    • 34250668846 scopus 로고    scopus 로고
    • Nucleoside alpha-thiotriphosphates, polymerases and the exonuclease III analysis of oligonucleotides containing phosphorothioate linkages
    • DOI 10.1093/nar/gkm168
    • Yang, Z., Sismour, A.M. and Benner, S.A. (2007) Nucleoside alpha-thiotriphosphates, polymerases and the exonuclease III analysis of oligonucleotides containing phosphorothioate linkages. Nucleic Acids Res., 35, 3118-3127. (Pubitemid 47073649)
    • (2007) Nucleic Acids Research , vol.35 , Issue.9 , pp. 3118-3127
    • Yang, Z.1    Sismour, A.M.2    Benner, S.A.3
  • 11
    • 33845666694 scopus 로고    scopus 로고
    • Artificially expanded genetic information system: A new base pair with an alternative hydrogen bonding pattern
    • DOI 10.1093/nar/gkl633
    • Yang, Z., Hutter, D., Sheng, P., Sismour, A.M. and Benner, S.A. (2006) Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern. Nucleic Acids Res., 34, 6095-6101. (Pubitemid 44942731)
    • (2006) Nucleic Acids Research , vol.34 , Issue.21 , pp. 6095-6101
    • Yang, Z.1    Hutter, D.2    Sheng, P.3    Sismour, A.M.4    Benner, S.A.5
  • 14
    • 14044252836 scopus 로고    scopus 로고
    • Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA
    • DOI 10.1074/jbc.M411684200
    • Hashimoto, H., Shimizu, T., Imasaki, T., Kato, M., Shichijo, N., Kita, K. and Sato, M. (2005) Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA. J. Biol. Chem., 280, 5605-5610. (Pubitemid 40280039)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.7 , pp. 5605-5610
    • Hashimoto, H.1    Shimizu, T.2    Imasaki, T.3    Kato, M.4    Shichijo, N.5    Kita, K.6    Sato, M.7
  • 15
    • 41449117713 scopus 로고    scopus 로고
    • Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding
    • DOI 10.1016/j.str.2008.01.017, PII S0969212608000750
    • Lambert, A.R., Sussman, D., Shen, B., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y. and Stoddard, B.L. (2008) Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding. Structure, 16, 558-569. (Pubitemid 351458706)
    • (2008) Structure , vol.16 , Issue.4 , pp. 558-569
    • Lambert, A.R.1    Sussman, D.2    Shen, B.3    Maunus, R.4    Nix, J.5    Samuelson, J.6    Xu, S.-Y.7    Stoddard, B.L.8
  • 16
    • 84905494429 scopus 로고    scopus 로고
    • (8 December 2010, date last accessed)
    • New England BioLabs. http://www.neb.com/nebecomm/tech- reference/restriction-enzymes/survival-restriction-endonucleases- in-reaction.asp (8 December 2010, date last accessed).
    • New England BioLabs
  • 17
    • 27244453121 scopus 로고    scopus 로고
    • The use of thymidine analogs to improve the replication of an extra DNA base pair: A synthetic biological system
    • DOI 10.1093/nar/gki873
    • Sismour, A.M. and Benner, S.A. (2005) The use of thymidine analogs to improve the replication of an extra DNA base pair: a synthetic biological system. Nucleic Acids Res., 33, 5640-5646. (Pubitemid 41548830)
    • (2005) Nucleic Acids Research , vol.33 , Issue.17 , pp. 5640-5646
    • Sismour, A.M.1    Benner, S.A.2
  • 18
    • 0032848682 scopus 로고    scopus 로고
    • Type II restriction endonucleases: Structural, functional and evolutionary relationships
    • DOI 10.1016/S1367-5931(99)00012-5
    • Kovall, R.A. and Matthews, B.W. (1999) Type II restriction endonucleases: structural, functional and evolutionary relationships. Curr. Opin. Chem. Biol., 3, 578-583. (Pubitemid 29447494)
    • (1999) Current Opinion in Chemical Biology , vol.3 , Issue.5 , pp. 578-583
    • Kovall, R.A.1    Matthews, B.W.2
  • 20
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier, B.S. and Stoddard, B.L. (2001) Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res., 29, 3757-3774. (Pubitemid 32910517)
    • (2001) Nucleic Acids Research , vol.29 , Issue.18 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.