-
1
-
-
79954591078
-
Evolving concepts in lung carcinogenesis
-
Gomperts BN, Spira A, Massion PP, Walser TC, Wistuba II, et al. (2011) Evolving concepts in lung carcinogenesis. Semin Respir Crit Care Med 32: 32-43.
-
(2011)
Semin Respir Crit Care Med
, vol.32
, pp. 32-43
-
-
Gomperts, B.N.1
Spira, A.2
Massion, P.P.3
Walser, T.C.4
Wistuba, I.I.5
-
3
-
-
79952384705
-
Cancer epigenetics reaches mainstream oncology
-
Rodriguez-Paredes M, Esteller M, (2011) Cancer epigenetics reaches mainstream oncology. Nat Med 17: 330-339.
-
(2011)
Nat Med
, vol.17
, pp. 330-339
-
-
Rodriguez-Paredes, M.1
Esteller, M.2
-
4
-
-
77957970301
-
Epigenetic modifications and human disease
-
Portela A, Esteller M, (2010) Epigenetic modifications and human disease. Nat Biotechnol 28: 1057-1068.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1057-1068
-
-
Portela, A.1
Esteller, M.2
-
5
-
-
79955811415
-
Nucleosome structure(s) and stability: variations on a theme
-
Andrews AJ, Luger K, (2011) Nucleosome structure(s) and stability: variations on a theme. Annu Rev Biophys 40: 99-117.
-
(2011)
Annu Rev Biophys
, vol.40
, pp. 99-117
-
-
Andrews, A.J.1
Luger, K.2
-
6
-
-
68349125112
-
What controls nucleosome positions?
-
Segal E, Widom J, (2009) What controls nucleosome positions? Trends Genet 25: 335-343.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
7
-
-
77953305748
-
A structural perspective on the where, how, why, and what of nucleosome positioning
-
Arya G, Maitra A, Grigoryev SA, (2010) A structural perspective on the where, how, why, and what of nucleosome positioning. J Biomol Struct Dyn 27: 803-820.
-
(2010)
J Biomol Struct Dyn
, vol.27
, pp. 803-820
-
-
Arya, G.1
Maitra, A.2
Grigoryev, S.A.3
-
8
-
-
77957883572
-
Gene regulation by nucleosome positioning
-
Bai L, Morozov AV, (2010) Gene regulation by nucleosome positioning. Trends Genet 26: 476-483.
-
(2010)
Trends Genet
, vol.26
, pp. 476-483
-
-
Bai, L.1
Morozov, A.V.2
-
9
-
-
22844457491
-
DNA methylation and human disease
-
Robertson KD, (2005) DNA methylation and human disease. Nat Rev Genet 6: 597-610.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 597-610
-
-
Robertson, K.D.1
-
10
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, et al. (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324: 930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
-
11
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis S, Heintz N, (2009) The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324: 929-930.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
12
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, et al. (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
-
13
-
-
77249178763
-
DNA methylation increases nucleosome compaction and rigidity
-
Choy JS, Wei S, Lee JY, Tan S, Chu S, et al. (2010) DNA methylation increases nucleosome compaction and rigidity. J Am Chem Soc 132: 1782-1783.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 1782-1783
-
-
Choy, J.S.1
Wei, S.2
Lee, J.Y.3
Tan, S.4
Chu, S.5
-
14
-
-
78751470921
-
Structure and function of mammalian DNA methyltransferases
-
Jurkowska RZ, Jurkowski TP, Jeltsch A, (2011) Structure and function of mammalian DNA methyltransferases. Chembiochem 12: 206-222.
-
(2011)
Chembiochem
, vol.12
, pp. 206-222
-
-
Jurkowska, R.Z.1
Jurkowski, T.P.2
Jeltsch, A.3
-
15
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, et al. (2010) Relationship between nucleosome positioning and DNA methylation. Nature 466: 388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
-
16
-
-
80052725628
-
Nucleosomes protect DNA from DNA methylation in vivo and in vitro
-
Felle M, Hoffmeister H, Rothammer J, Fuchs A, Exler JH, et al. (2011) Nucleosomes protect DNA from DNA methylation in vivo and in vitro. Nucleic Acids Res 39: 8355-8365.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8355-8365
-
-
Felle, M.1
Hoffmeister, H.2
Rothammer, J.3
Fuchs, A.4
Exler, J.H.5
-
17
-
-
79952258043
-
Nucleosomes containing methylated DNA stabilize DNA methyltransferases 3A/3B and ensure faithful epigenetic inheritance
-
Sharma S, De Carvalho DD, Jeong S, Jones PA, Liang G, (2011) Nucleosomes containing methylated DNA stabilize DNA methyltransferases 3A/3B and ensure faithful epigenetic inheritance. PLoS Genet 7: e1001286.
-
(2011)
PLoS Genet
, vol.7
-
-
Sharma, S.1
De Carvalho, D.D.2
Jeong, S.3
Jones, P.A.4
Liang, G.5
-
18
-
-
77958481159
-
Nucleosome-interacting proteins regulated by DNA and histone methylation
-
Bartke T, Vermeulen M, Xhemalce B, Robson SC, Mann M, et al. (2010) Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 143: 470-484.
-
(2010)
Cell
, vol.143
, pp. 470-484
-
-
Bartke, T.1
Vermeulen, M.2
Xhemalce, B.3
Robson, S.C.4
Mann, M.5
-
19
-
-
77949874234
-
Histone variants - ancient wrap artists of the epigenome
-
Talbert PB, Henikoff S, (2010) Histone variants- ancient wrap artists of the epigenome. Nat Rev Mol Cell Biol 11: 264-275.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 264-275
-
-
Talbert, P.B.1
Henikoff, S.2
-
20
-
-
38949091078
-
H2A.Z: view from the top
-
Zlatanova J, Thakar A, (2008) H2A.Z: view from the top. Structure 16: 166-179.
-
(2008)
Structure
, vol.16
, pp. 166-179
-
-
Zlatanova, J.1
Thakar, A.2
-
21
-
-
65249153567
-
Regulation of gene expression and cellular proliferation by histone H2A.Z. Biochem Cell Biol
-
Svotelis A, Gevry N, Gaudreau L, (2009) Regulation of gene expression and cellular proliferation by histone H2A.Z. Biochem Cell Biol 87: 179-188.
-
(2009)
, vol.87
, pp. 179-188
-
-
Svotelis, A.1
Gevry, N.2
Gaudreau, L.3
-
22
-
-
65249117717
-
Transcriptional and epigenetic functions of histone variant H2A.Z. Biochem Cell Biol
-
Draker R, Cheung P, (2009) Transcriptional and epigenetic functions of histone variant H2A.Z. Biochem Cell Biol 87: 19-25.
-
(2009)
, vol.87
, pp. 19-25
-
-
Draker, R.1
Cheung, P.2
-
23
-
-
79952536146
-
The double face of the histone variant H3.3
-
Szenker E, Ray-Gallet D, Almouzni G, (2011) The double face of the histone variant H3.3. Cell Res 21: 421-434.
-
(2011)
Cell Res
, vol.21
, pp. 421-434
-
-
Szenker, E.1
Ray-Gallet, D.2
Almouzni, G.3
-
24
-
-
79959484677
-
Signals and combinatorial functions of histone modifications
-
Suganuma T, Workman JL, (2011) Signals and combinatorial functions of histone modifications. Annu Rev Biochem 80: 473-499.
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 473-499
-
-
Suganuma, T.1
Workman, J.L.2
-
25
-
-
79954416946
-
Readers of histone modifications
-
Yun M, Wu J, Workman JL, Li B, (2011) Readers of histone modifications. Cell Res 21: 564-578.
-
(2011)
Cell Res
, vol.21
, pp. 564-578
-
-
Yun, M.1
Wu, J.2
Workman, J.L.3
Li, B.4
-
27
-
-
27144524031
-
Involvement of a cell adhesion molecule, TSLC1/IGSF4, in human oncogenesis
-
Murakami Y, (2005) Involvement of a cell adhesion molecule, TSLC1/IGSF4, in human oncogenesis. Cancer Sci 96: 543-552.
-
(2005)
Cancer Sci
, vol.96
, pp. 543-552
-
-
Murakami, Y.1
-
28
-
-
79251508869
-
Function and histopathology of a cell adhesion molecule TSLC1 in cancer
-
Liang QL, Chen GQ, Li ZY, Wang BR, (2011) Function and histopathology of a cell adhesion molecule TSLC1 in cancer. Cancer Invest 29: 107-112.
-
(2011)
Cancer Invest
, vol.29
, pp. 107-112
-
-
Liang, Q.L.1
Chen, G.Q.2
Li, Z.Y.3
Wang, B.R.4
-
29
-
-
54749154455
-
Epigenetic silencing of cell adhesion molecule 1 in different cancer progenitor cells of transgenic c-Myc and c-Raf mouse lung tumors
-
Reamon-Buettner SM, Borlak J, (2008) Epigenetic silencing of cell adhesion molecule 1 in different cancer progenitor cells of transgenic c-Myc and c-Raf mouse lung tumors. Cancer Res 68: 7587-7596.
-
(2008)
Cancer Res
, vol.68
, pp. 7587-7596
-
-
Reamon-Buettner, S.M.1
Borlak, J.2
-
30
-
-
35748936148
-
Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island
-
Lin JC, Jeong S, Liang G, Takai D, Fatemi M, et al. (2007) Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island. Cancer Cell 12: 432-444.
-
(2007)
Cancer Cell
, vol.12
, pp. 432-444
-
-
Lin, J.C.1
Jeong, S.2
Liang, G.3
Takai, D.4
Fatemi, M.5
-
31
-
-
29144435153
-
Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level
-
Fatemi M, Pao MM, Jeong S, Gal-Yam EN, Egger G, et al. (2005) Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level. Nucleic Acids Res 33: e176.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Fatemi, M.1
Pao, M.M.2
Jeong, S.3
Gal-Yam, E.N.4
Egger, G.5
-
32
-
-
33749403746
-
Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting
-
Gal-Yam EN, Jeong S, Tanay A, Egger G, Lee AS, et al. (2006) Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting. PLoS Genet 2: e160.
-
(2006)
PLoS Genet
, vol.2
-
-
Gal-Yam, E.N.1
Jeong, S.2
Tanay, A.3
Egger, G.4
Lee, A.S.5
-
33
-
-
54849442676
-
Single-molecule analysis of chromatin: changing the view of genomes one molecule at a time
-
Pondugula S, Kladde MP, (2008) Single-molecule analysis of chromatin: changing the view of genomes one molecule at a time. J Cell Biochem 105: 330-337.
-
(2008)
J Cell Biochem
, vol.105
, pp. 330-337
-
-
Pondugula, S.1
Kladde, M.P.2
-
34
-
-
84862020303
-
Micrococcal nuclease-southern blot assay: I. MNase and restriction digestions
-
doi:10.1101/pdb.prot4890
-
Carey M, Smale ST, (2007) Micrococcal nuclease-southern blot assay: I. MNase and restriction digestions. CSH Protoc 2007 doi:10.1101/pdb.prot4890.
-
(2007)
CSH Protoc
, vol.2007
-
-
Carey, M.1
Smale, S.T.2
-
35
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin C, Zang C, Wei G, Cui K, Peng W, et al. (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-945.
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
-
36
-
-
36248953882
-
Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
-
Haring M, Offermann S, Danker T, Horst I, Peterhansel C, et al. (2007) Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization. Plant Methods 3: 11.
-
(2007)
Plant Methods
, vol.3
, pp. 11
-
-
Haring, M.1
Offermann, S.2
Danker, T.3
Horst, I.4
Peterhansel, C.5
-
37
-
-
77649086970
-
A map of open chromatin in human pancreatic islets
-
Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, et al. (2010) A map of open chromatin in human pancreatic islets. Nat Genet 42: 255-259.
-
(2010)
Nat Genet
, vol.42
, pp. 255-259
-
-
Gaulton, K.J.1
Nammo, T.2
Pasquali, L.3
Simon, J.M.4
Giresi, P.G.5
-
38
-
-
68249142923
-
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
-
Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, et al. (2009) Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol 16: 847-852.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 847-852
-
-
Zhang, Y.1
Moqtaderi, Z.2
Rattner, B.P.3
Euskirchen, G.4
Snyder, M.5
-
39
-
-
77955410104
-
Nucleosome sequence preferences influence in vivo nucleosome organization
-
Kaplan N, Moore I, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, et al. (2010) Nucleosome sequence preferences influence in vivo nucleosome organization. Nat Struct Mol Biol 17: 918-920.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 918-920
-
-
Kaplan, N.1
Moore, I.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
-
40
-
-
79956316470
-
A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
-
Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, et al. (2011) A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 332: 977-980.
-
(2011)
Science
, vol.332
, pp. 977-980
-
-
Zhang, Z.1
Wippo, C.J.2
Wal, M.3
Ward, E.4
Korber, P.5
-
41
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458: 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
-
42
-
-
5444229020
-
Measuring changes in chromatin using micrococcal nuclease
-
Steward N, Sano H, (2004) Measuring changes in chromatin using micrococcal nuclease. Methods Mol Biol 287: 65-75.
-
(2004)
Methods Mol Biol
, vol.287
, pp. 65-75
-
-
Steward, N.1
Sano, H.2
-
43
-
-
77953310289
-
Nucleosome positioning, nucleosome spacing and the nucleosome code
-
Clark DJ, (2010) Nucleosome positioning, nucleosome spacing and the nucleosome code. J Biomol Struct Dyn 27: 781-793.
-
(2010)
J Biomol Struct Dyn
, vol.27
, pp. 781-793
-
-
Clark, D.J.1
-
44
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. cerevisiae
-
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, et al. (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309: 626-630.
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.C.1
Liu, Y.J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
-
45
-
-
68149158205
-
Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'
-
Henikoff S, (2009) Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'. Nat Genet 41: 865-866.
-
(2009)
Nat Genet
, vol.41
, pp. 865-866
-
-
Henikoff, S.1
-
46
-
-
26844511498
-
Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin
-
Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, et al. (2005) Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin. Cell 123: 233-248.
-
(2005)
Cell
, vol.123
, pp. 233-248
-
-
Raisner, R.M.1
Hartley, P.D.2
Meneghini, M.D.3
Bao, M.Z.4
Liu, C.L.5
-
47
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
-
48
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, et al. (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell 132: 887-898.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
-
49
-
-
67649668767
-
Histone H2A.Z is essential for estrogen receptor signaling
-
Gevry N, Hardy S, Jacques PE, Laflamme L, Svotelis A, et al. (2009) Histone H2A.Z is essential for estrogen receptor signaling. Genes Dev 23: 1522-1533.
-
(2009)
Genes Dev
, vol.23
, pp. 1522-1533
-
-
Gevry, N.1
Hardy, S.2
Jacques, P.E.3
Laflamme, L.4
Svotelis, A.5
-
50
-
-
77956931047
-
H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes
-
Kelly TK, Miranda TB, Liang G, Berman BP, Lin JC, et al. (2010) H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes. Mol Cell 39: 901-911.
-
(2010)
Mol Cell
, vol.39
, pp. 901-911
-
-
Kelly, T.K.1
Miranda, T.B.2
Liang, G.3
Berman, B.P.4
Lin, J.C.5
-
51
-
-
55549148715
-
H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment
-
Creyghton MP, Markoulaki S, Levine SS, Hanna J, Lodato MA, et al. (2008) H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment. Cell 135: 649-661.
-
(2008)
Cell
, vol.135
, pp. 649-661
-
-
Creyghton, M.P.1
Markoulaki, S.2
Levine, S.S.3
Hanna, J.4
Lodato, M.A.5
-
52
-
-
77952378219
-
Histone variant H2A.Z inhibits transcription in reconstituted nucleosomes
-
Thakar A, Gupta P, McAllister WT, Zlatanova J, (2010) Histone variant H2A.Z inhibits transcription in reconstituted nucleosomes. Biochemistry 49: 4018-4026.
-
(2010)
Biochemistry
, vol.49
, pp. 4018-4026
-
-
Thakar, A.1
Gupta, P.2
McAllister, W.T.3
Zlatanova, J.4
-
53
-
-
77954670503
-
Reconciling the positive and negative roles of histone H2A.Z in gene transcription
-
Marques M, Laflamme L, Gervais AL, Gaudreau L, (2010) Reconciling the positive and negative roles of histone H2A.Z in gene transcription. Epigenetics 5: 267-272.
-
(2010)
Epigenetics
, vol.5
, pp. 267-272
-
-
Marques, M.1
Laflamme, L.2
Gervais, A.L.3
Gaudreau, L.4
-
54
-
-
55549141877
-
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
-
Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S, (2008) Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature 456: 125-129.
-
(2008)
Nature
, vol.456
, pp. 125-129
-
-
Zilberman, D.1
Coleman-Derr, D.2
Ballinger, T.3
Henikoff, S.4
-
55
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P, Zilberman D, (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
56
-
-
78649281582
-
Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis
-
Conerly ML, Teves SS, Diolaiti D, Ulrich M, Eisenman RN, et al. (2010) Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis. Genome Res 20: 1383-1390.
-
(2010)
Genome Res
, vol.20
, pp. 1383-1390
-
-
Conerly, M.L.1
Teves, S.S.2
Diolaiti, D.3
Ulrich, M.4
Eisenman, R.N.5
-
57
-
-
78649884849
-
H2A.Z nucleosomes enriched over active genes are homotypic
-
Weber CM, Henikoff JG, Henikoff S, (2010) H2A.Z nucleosomes enriched over active genes are homotypic. Nat Struct Mol Biol 17: 1500-1507.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1500-1507
-
-
Weber, C.M.1
Henikoff, J.G.2
Henikoff, S.3
-
58
-
-
72749126285
-
H2A.Z and H3.3 histone variants affect nucleosome structure: biochemical and biophysical studies
-
Thakar A, Gupta P, Ishibashi T, Finn R, Silva-Moreno B, et al. (2009) H2A.Z and H3.3 histone variants affect nucleosome structure: biochemical and biophysical studies. Biochemistry 48: 10852-10857.
-
(2009)
Biochemistry
, vol.48
, pp. 10852-10857
-
-
Thakar, A.1
Gupta, P.2
Ishibashi, T.3
Finn, R.4
Silva-Moreno, B.5
-
59
-
-
77953995002
-
Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers
-
Chi P, Allis CD, Wang GG, (2010) Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers. Nat Rev Cancer 10: 457-469.
-
(2010)
Nat Rev Cancer
, vol.10
, pp. 457-469
-
-
Chi, P.1
Allis, C.D.2
Wang, G.G.3
-
60
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125: 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
-
61
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, et al. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
-
62
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, et al. (2007) Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1: 299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
-
63
-
-
34548424709
-
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
-
Zhao XD, Han X, Chew JL, Liu J, Chiu KP, et al. (2007) Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. Cell Stem Cell 1: 286-298.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 286-298
-
-
Zhao, X.D.1
Han, X.2
Chew, J.L.3
Liu, J.4
Chiu, K.P.5
-
64
-
-
58149214356
-
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells
-
Wei G, Wei L, Zhu J, Zang C, Hu-Li J, et al. (2009) Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 30: 155-167.
-
(2009)
Immunity
, vol.30
, pp. 155-167
-
-
Wei, G.1
Wei, L.2
Zhu, J.3
Zang, C.4
Hu-Li, J.5
-
65
-
-
67349169780
-
Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells
-
Araki Y, Wang Z, Zang C, Wood WH, III, Schones D, et al. (2009) Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells. Immunity 30: 912-925.
-
(2009)
Immunity
, vol.30
, pp. 912-925
-
-
Araki, Y.1
Wang, Z.2
Zang, C.3
Wood III, W.H.4
Schones, D.5
-
66
-
-
44449134715
-
DACT3 is an epigenetic regulator of Wnt/beta-catenin signaling in colorectal cancer and is a therapeutic target of histone modifications
-
Jiang X, Tan J, Li J, Kivimae S, Yang X, et al. (2008) DACT3 is an epigenetic regulator of Wnt/beta-catenin signaling in colorectal cancer and is a therapeutic target of histone modifications. Cancer Cell 13: 529-541.
-
(2008)
Cancer Cell
, vol.13
, pp. 529-541
-
-
Jiang, X.1
Tan, J.2
Li, J.3
Kivimae, S.4
Yang, X.5
-
67
-
-
58149395035
-
Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells
-
Rodriguez J, Munoz M, Vives L, Frangou CG, Groudine M, et al. (2008) Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells. Proc Natl Acad Sci U S A 105: 19809-19814.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 19809-19814
-
-
Rodriguez, J.1
Munoz, M.2
Vives, L.3
Frangou, C.G.4
Groudine, M.5
-
68
-
-
78449231269
-
Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells
-
Bapat SA, Jin V, Berry N, Balch C, Sharma N, et al. (2010) Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells. Epigenetics 5: 716-729.
-
(2010)
Epigenetics
, vol.5
, pp. 716-729
-
-
Bapat, S.A.1
Jin, V.2
Berry, N.3
Balch, C.4
Sharma, N.5
-
69
-
-
0344255673
-
Paired-Box genes are frequently expressed in cancer and often required for cancer cell survival
-
Muratovska A, Zhou C, He S, Goodyer P, Eccles MR, (2003) Paired-Box genes are frequently expressed in cancer and often required for cancer cell survival. Oncogene 22: 7989-7997.
-
(2003)
Oncogene
, vol.22
, pp. 7989-7997
-
-
Muratovska, A.1
Zhou, C.2
He, S.3
Goodyer, P.4
Eccles, M.R.5
-
70
-
-
79953774672
-
Molecular cross-regulation between PPAR-gamma and other signaling pathways: Implications for lung cancer therapy
-
Reka AK, Goswami MT, Krishnapuram R, Standiford TJ, Keshamouni VG, (2011) Molecular cross-regulation between PPAR-gamma and other signaling pathways: Implications for lung cancer therapy. Lung Cancer 72: 154-159.
-
(2011)
Lung Cancer
, vol.72
, pp. 154-159
-
-
Reka, A.K.1
Goswami, M.T.2
Krishnapuram, R.3
Standiford, T.J.4
Keshamouni, V.G.5
-
71
-
-
0034036430
-
Lung-targeted expression of the c-Raf-1 kinase in transgenic mice exposes a novel oncogenic character of the wild-type protein
-
Kerkhoff E, Fedorov LM, Siefken R, Walter AO, Papadopoulos T, et al. (2000) Lung-targeted expression of the c-Raf-1 kinase in transgenic mice exposes a novel oncogenic character of the wild-type protein. Cell Growth Differ 11: 185-190.
-
(2000)
Cell Growth Differ
, vol.11
, pp. 185-190
-
-
Kerkhoff, E.1
Fedorov, L.M.2
Siefken, R.3
Walter, A.O.4
Papadopoulos, T.5
-
72
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E, Fondufe-Mittendorf Y, Chen L, Thastrom A, Field Y, et al. (2006) A genomic code for nucleosome positioning. Nature 442: 772-778.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
-
73
-
-
57149119464
-
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, et al. (2008) Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4: e1000216.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
Sharon, E.5
-
74
-
-
77954616951
-
Predicting nucleosome positioning using a duration Hidden Markov Model
-
Xi L, Fondufe-Mittendorf Y, Xia L, Flatow J, Widom J, et al. (2010) Predicting nucleosome positioning using a duration Hidden Markov Model. BMC Bioinformatics 11: 346.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 346
-
-
Xi, L.1
Fondufe-Mittendorf, Y.2
Xia, L.3
Flatow, J.4
Widom, J.5
-
75
-
-
77954282770
-
ICM Web: the interactive chromatin modeling web server
-
Stolz RC, Bishop TC, (2010) ICM Web: the interactive chromatin modeling web server. Nucleic Acids Res 38 Suppl pp. W254-W261.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.SUPPL.
-
-
Stolz, R.C.1
Bishop, T.C.2
-
76
-
-
65049084764
-
A streamlined method for rapid and sensitive chromatin immunoprecipitation
-
Sikes ML, Bradshaw JM, Ivory WT, Lunsford JL, McMillan RE, et al. (2009) A streamlined method for rapid and sensitive chromatin immunoprecipitation. J Immunol Methods 344: 58-63.
-
(2009)
J Immunol Methods
, vol.344
, pp. 58-63
-
-
Sikes, M.L.1
Bradshaw, J.M.2
Ivory, W.T.3
Lunsford, J.L.4
McMillan, R.E.5
-
77
-
-
14944361815
-
RSK4 and PAK5 are novel candidate genes in diabetic rat kidney and brain
-
Niehof M, Borlak J, (2005) RSK4 and PAK5 are novel candidate genes in diabetic rat kidney and brain. Mol Pharmacol 67: 604-611.
-
(2005)
Mol Pharmacol
, vol.67
, pp. 604-611
-
-
Niehof, M.1
Borlak, J.2
|