-
1
-
-
0017331464
-
Structure of chromatin
-
Kornberg, R.D. Structure of chromatin. Annu. Rev. Biochem. 46, 931-954 (1977).
-
(1977)
Annu. Rev. Biochem
, vol.46
, pp. 931-954
-
-
Kornberg, R.D.1
-
2
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. cerevisiae
-
Yuan, G.-C. et al. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309, 626-630 (2005).
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.-C.1
-
3
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
Lee, W. et al. A high-resolution atlas of nucleosome occupancy in yeast. Nat. Genet. 39, 1235-1244 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 1235-1244
-
-
Lee, W.1
-
4
-
-
43749099875
-
Nucleosome organization in the Drosophila genome
-
Mavrich, T.N. et al. Nucleosome organization in the Drosophila genome. Nature 453, 358-362 (2008).
-
(2008)
Nature
, vol.453
, pp. 358-362
-
-
Mavrich, T.N.1
-
5
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones, D.E. et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 132, 887-898 (2008).
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
-
6
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
-
Shivaswamy, S. et al. Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol. 6, e65 (2008).
-
(2008)
PLoS Biol
, vol.6
-
-
Shivaswamy, S.1
-
7
-
-
46449103738
-
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
-
Valouev, A. et al. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res. 18, 1051-1063 (2008).
-
(2008)
Genome Res
, vol.18
, pp. 1051-1063
-
-
Valouev, A.1
-
8
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosome throughout the yeast genome
-
Mavrich, T.N. et al. A barrier nucleosome model for statistical positioning of nucleosome throughout the yeast genome. Genome Res. 18, 1073-1083 (2008).
-
(2008)
Genome Res
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.N.1
-
9
-
-
0035076210
-
Histone acetylation at promoters is differentially affected by activators and repressors
-
Deckert, J. & Struhl, K. Histone acetylation at promoters is differentially affected by activators and repressors. Mol. Cell. Biol. 21, 2726-2735 (2001).
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 2726-2735
-
-
Deckert, J.1
Struhl, K.2
-
10
-
-
0038094501
-
Nucleosomes unfold completely at a transcriptionally active promoter
-
Boeger, H. et al. Nucleosomes unfold completely at a transcriptionally active promoter. Mol. Cell 11, 1587-1598 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1587-1598
-
-
Boeger, H.1
-
11
-
-
0038094502
-
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
-
Reinke, H. & Horz, W. Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol. Cell 11, 1599-1607 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1599-1607
-
-
Reinke, H.1
Horz, W.2
-
12
-
-
35148882905
-
The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo
-
Schwabish, M.A. & Struhl, K. The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo. Mol. Cell. Biol. 27, 6987-6995 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 6987-6995
-
-
Schwabish, M.A.1
Struhl, K.2
-
13
-
-
9144274420
-
Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo
-
Kristjuhan, A. & Svejstrup, J.Q. Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo. EMBO J. 23, 4243-4252 (2004).
-
(2004)
EMBO J
, vol.23
, pp. 4243-4252
-
-
Kristjuhan, A.1
Svejstrup, J.Q.2
-
14
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genomewide
-
Lee, C.K. et al. Evidence for nucleosome depletion at active regulatory regions genomewide. Nat. Genet. 36, 900-905 (2004).
-
(2004)
Nat. Genet
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
-
15
-
-
8644287437
-
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
-
Schwabish, M.A. & Struhl, K. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 24, 10111-10117 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 10111-10117
-
-
Schwabish, M.A.1
Struhl, K.2
-
16
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan, N. et al. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458, 362-366 (2009).
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
-
17
-
-
20444403749
-
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
-
Sekinger, E.A., Moqtaderi, Z. & Struhl, K. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol. Cell 18, 735-748 (2005).
-
(2005)
Mol. Cell
, vol.18
, pp. 735-748
-
-
Sekinger, E.A.1
Moqtaderi, Z.2
Struhl, K.3
-
18
-
-
0029026719
-
Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic structure
-
Iyer, V. & Struhl, K. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic structure. EMBO J. 14, 2570-2579 (1995).
-
(1995)
EMBO J
, vol.14
, pp. 2570-2579
-
-
Iyer, V.1
Struhl, K.2
-
19
-
-
0022230224
-
DNA bending and its relation to nucleosome positioning
-
Drew, H.R. & Travers, A.A. DNA bending and its relation to nucleosome positioning. J. Mol. Biol. 186, 773-790 (1985).
-
(1985)
J. Mol. Biol
, vol.186
, pp. 773-790
-
-
Drew, H.R.1
Travers, A.A.2
-
20
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
Satchwell, S.C., Drew, H.R. & Travers, A.A. Sequence periodicities in chicken nucleosome core DNA. J. Mol. Biol. 191, 659-675 (1986).
-
(1986)
J. Mol. Biol
, vol.191
, pp. 659-675
-
-
Satchwell, S.C.1
Drew, H.R.2
Travers, A.A.3
-
21
-
-
0035704707
-
-
Widom, J. Role of DNA sequence in nucleosome stability and dynamics. Q. Rev. Biophys. 34, 269-324 (2001).
-
Widom, J. Role of DNA sequence in nucleosome stability and dynamics. Q. Rev. Biophys. 34, 269-324 (2001).
-
-
-
-
22
-
-
0024261880
-
Statistical positioning of nucleosomes by specific protein binding to an upstream activating sequence in yeast
-
Fedor, M.J., Lue, N.F. & Kornberg, R.D. Statistical positioning of nucleosomes by specific protein binding to an upstream activating sequence in yeast. J. Mol. Biol. 204, 109-127 (1988).
-
(1988)
J. Mol. Biol
, vol.204
, pp. 109-127
-
-
Fedor, M.J.1
Lue, N.F.2
Kornberg, R.D.3
-
23
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary, P.T. & Widom, J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J. Mol. Biol. 276, 19-42 (1998).
-
(1998)
J. Mol. Biol
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
24
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal, E. et al. A genomic code for nucleosome positioning. Nature 442, 772-778 (2006).
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
-
25
-
-
33745847547
-
Antagonistic forces that position nucleosomes in vivo
-
Whitehouse, I. & Tsukiyama, T. Antagonistic forces that position nucleosomes in vivo. Nat. Struct. Mol. Biol. 13, 633-640 (2006).
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 633-640
-
-
Whitehouse, I.1
Tsukiyama, T.2
-
26
-
-
33847057887
-
Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells
-
Yang, A. et al. Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Mol. Cell 24, 593-602 (2006).
-
(2006)
Mol. Cell
, vol.24
, pp. 593-602
-
-
Yang, A.1
-
27
-
-
33749381311
-
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection
-
Liu, X. et al. Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res. 16, 1517-1528 (2006).
-
(2006)
Genome Res
, vol.16
, pp. 1517-1528
-
-
Liu, X.1
-
28
-
-
0019888118
-
Sequence specific cleavage of DNA by micrococcal nuclease
-
Hörz, W. & Altenburger, W. Sequence specific cleavage of DNA by micrococcal nuclease. Nucleic Acids Res. 9, 2643-2658 (1981).
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 2643-2658
-
-
Hörz, W.1
Altenburger, W.2
-
29
-
-
0029559463
-
Yeast transcriptional regulatory mechanisms
-
Struhl, K. Yeast transcriptional regulatory mechanisms. Annu. Rev. Genet. 29, 651-674 (1995).
-
(1995)
Annu. Rev. Genet
, vol.29
, pp. 651-674
-
-
Struhl, K.1
-
30
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse, G.W. et al. RNA polymerase is poised for activation across the genome. Nat. Genet. 39, 1507-1511 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
-
31
-
-
33751504083
-
Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase
-
Steinmetz, E.J. et al. Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase. Mol. Cell 24, 735-746 (2006).
-
(2006)
Mol. Cell
, vol.24
, pp. 735-746
-
-
Steinmetz, E.J.1
-
32
-
-
33846984935
-
Transcriptional noise and the fidelity of initiation by RNA polymerase II
-
Struhl, K. Transcriptional noise and the fidelity of initiation by RNA polymerase II. Nat. Struct. Mol. Biol. 14, 103-105 (2007).
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 103-105
-
-
Struhl, K.1
-
33
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
Dion, M.F. et al. Dynamics of replication-independent histone turnover in budding yeast. Science 315, 1405-1408 (2007).
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.F.1
-
34
-
-
0348166012
-
Chromatin assembly in vitro with purified recombinant ACF and NAP-1
-
Fyodorov, D.V. & Kadonaga, J.T. Chromatin assembly in vitro with purified recombinant ACF and NAP-1. Methods Enzymol. 371, 499-515 (2003).
-
(2003)
Methods Enzymol
, vol.371
, pp. 499-515
-
-
Fyodorov, D.V.1
Kadonaga, J.T.2
|