-
1
-
-
77949874234
-
Histone variants-ancient wrap artists of the epigenome
-
Talbert, P.B. & Henikoff, S. Histone variants-ancient wrap artists of the epigenome. Nat. Rev. Mol. Cell Biol. 11, 264-275 (2010).
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 264-275
-
-
Talbert, P.B.1
Henikoff, S.2
-
2
-
-
0019011791
-
Drosophila nucleosomes contain an unusual histone-like protein
-
Palmer, D., Snyder, L.A. & Blumenfeld, M. Drosophila nucleosomes contain an unusual histone-like protein. Proc. Natl. Acad. Sci. USA 77, 2671-2675 (1980).
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 2671-2675
-
-
Palmer, D.1
Snyder, L.A.2
Blumenfeld, M.3
-
3
-
-
0020358561
-
Patterns of histone variant synthesis can distinguish G0 from G1 cells
-
Wu, R.S., Tsai, S. & Bonner, W.M. Patterns of histone variant synthesis can distinguish G0 from G1 cells. Cell 31, 367-374 (1982).
-
(1982)
Cell
, vol.31
, pp. 367-374
-
-
Wu, R.S.1
Tsai, S.2
Bonner, W.M.3
-
4
-
-
38949091078
-
H2A.Z: View from the top
-
Zlatanova, J. & Thakar, A. H2A.Z: view from the top. Structure 16, 166-179 (2008).
-
(2008)
Structure
, vol.16
, pp. 166-179
-
-
Zlatanova, J.1
Thakar, A.2
-
5
-
-
0029954395
-
Essential and nonessential histone H2A variants in Tetrahymena thermophila
-
Liu, X., Li, B. & Gorovsky, M. Essential and nonessential histone H2A variants in Tetrahymena thermophila. Mol. Cell. Biol. 16, 4305-4311 (1996).
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 4305-4311
-
-
Liu, X.1
Li, B.2
Gorovsky, M.3
-
6
-
-
6344277345
-
Unique residues on the H2A.Z containing nucleosome surface are important for Xenopus laevis development
-
Ridgway, P., Brown, K.D., Rangasamy, D., Svensson, U. & Tremethick, D.J. Unique residues on the H2A.Z containing nucleosome surface are important for Xenopus laevis development. J. Biol. Chem. 279, 43815-43820 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 43815-43820
-
-
Ridgway, P.1
Brown, K.D.2
Rangasamy, D.3
Svensson, U.4
Tremethick, D.J.5
-
7
-
-
0035822687
-
Histone variant H2A.Z is required for early mammalian development
-
Faast, R. et al. Histone variant H2A.Z is required for early mammalian development. Curr. Biol. 11, 1183-1187 (2001).
-
(2001)
Curr. Biol.
, vol.11
, pp. 1183-1187
-
-
Faast, R.1
-
8
-
-
0027058961
-
A histone variant, H2AvD, is essential in Drosophila melanogaster
-
van Daal, A. & Elgin, S.C. A histone variant, H2AvD, is essential in Drosophila melanogaster. Mol. Biol. Cell 3, 593-602 (1992).
-
(1992)
Mol. Biol. Cell
, vol.3
, pp. 593-602
-
-
Van Daal, A.1
Elgin, S.C.2
-
9
-
-
19344372948
-
A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin
-
Kobor, M.S. et al. A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. PLoS Biol. 2, E131 (2004).
-
(2004)
PLoS Biol.
, vol.2
-
-
Kobor, M.S.1
-
10
-
-
9144269660
-
A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1
-
Krogan, N.J. et al. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol. Cell 12, 1565-1576 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 1565-1576
-
-
Krogan, N.J.1
-
11
-
-
0348184963
-
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
-
Mizuguchi, G. et al. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303, 343-348 (2004).
-
(2004)
Science
, vol.303
, pp. 343-348
-
-
Mizuguchi, G.1
-
12
-
-
43749099875
-
Nucleosome organization in the Drosophila genome
-
Mavrich, T.N. et al. Nucleosome organization in the Drosophila genome. Nature 453, 358-362 (2008).
-
(2008)
Nature
, vol.453
, pp. 358-362
-
-
Mavrich, T.N.1
-
13
-
-
34249026300
-
High-resolution profling of histone methylations in the human genome
-
Barski, A. et al. High-resolution profling of histone methylations in the human genome. Cell 129, 823-837 (2007).
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
-
14
-
-
55549141877
-
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
-
Zilberman, D., Coleman-Derr, D., Ballinger, T. & Henikoff, S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature 456, 125-129 (2008).
-
(2008)
Nature
, vol.456
, pp. 125-129
-
-
Zilberman, D.1
Coleman-Derr, D.2
Ballinger, T.3
Henikoff, S.4
-
15
-
-
76349103252
-
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
-
Lantermann, A.B. et al. Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nat. Struct. Mol. Biol. 17, 251-257 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 251-257
-
-
Lantermann, A.B.1
-
16
-
-
0033664380
-
Crystal structure of a nucleosome core particle containing the variant histone H2A.Z
-
Suto, R.K., Clarkson, M.J., Tremethick, D.J. & Luger, K. Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat. Struct. Biol. 7, 1121-1124 (2000).
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1121-1124
-
-
Suto, R.K.1
Clarkson, M.J.2
Tremethick, D.J.3
Luger, K.4
-
17
-
-
23044453722
-
Structural characterization of histone H2A variants. Cold Spring Harb
-
Chakravarthy, S., Bao, Y., Roberts, V.A., Tremethick, D. & Luger, K. Structural characterization of histone H2A variants. Cold Spring Harb. Symp. Quant. Biol. 69, 227-234 (2004).
-
(2004)
Symp. Quant. Biol.
, vol.69
, pp. 227-234
-
-
Chakravarthy, S.1
Bao, Y.2
Roberts, V.A.3
Tremethick, D.4
Luger, K.5
-
18
-
-
33745842279
-
Analysis of human histone H2AZ deposition in vivo argues against its direct role in epigenetic templating mechanisms
-
Viens, A. et al. Analysis of human histone H2AZ deposition in vivo argues against its direct role in epigenetic templating mechanisms. Mol. Cell. Biol. 26, 5325-5335 (2006).
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 5325-5335
-
-
Viens, A.1
-
19
-
-
2642515598
-
A new fuorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome
-
Park, Y.J., Dyer, P.N., Tremethick, D.J. & Luger, K. A new fuorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome. J. Biol. Chem. 279, 24274-24282 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 24274-24282
-
-
Park, Y.J.1
Dyer, P.N.2
Tremethick, D.J.3
Luger, K.4
-
20
-
-
0027716843
-
Effects of histone acetylation, ubiquitination and variants on nucleosome stability
-
Li, W., Nagaraja, S., Delcuve, G.P., Hendzel, M.J. & Davie, J.R. Effects of histone acetylation, ubiquitination and variants on nucleosome stability. Biochem. J. 296, 737-744 (1993).
-
(1993)
Biochem. J.
, vol.296
, pp. 737-744
-
-
Li, W.1
Nagaraja, S.2
Delcuve, G.P.3
Hendzel, M.J.4
Davie, J.R.5
-
21
-
-
33746015346
-
H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation
-
Thambirajah, A.A. et al. H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation. J. Biol. Chem. 281, 20036-20044 (2006).
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 20036-20044
-
-
Thambirajah, A.A.1
-
22
-
-
77952378219
-
Histone variant H2A.Z inhibits transcription in reconstituted nucleosomes
-
Thakar, A., Gupta, P., McAllister, W.T. & Zlatanova, J. Histone variant H2A.Z inhibits transcription in reconstituted nucleosomes. Biochemistry 49, 4018-4026 (2010).
-
(2010)
Biochemistry
, vol.49
, pp. 4018-4026
-
-
Thakar, A.1
Gupta, P.2
McAllister, W.T.3
Zlatanova, J.4
-
23
-
-
66649092628
-
Acetylation of vertebrate H2A.Z and its effect on the structure of the nucleosome
-
Ishibashi, T. et al. Acetylation of vertebrate H2A.Z and its effect on the structure of the nucleosome. Biochemistry 48, 5007-5017 (2009).
-
(2009)
Biochemistry
, vol.48
, pp. 5007-5017
-
-
Ishibashi, T.1
-
24
-
-
0242407193
-
Phylogenomics of the nucleosome
-
Malik, H.S. & Henikoff, S. Phylogenomics of the nucleosome. Nat. Struct. Biol. 10, 882-891 (2003).
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 882-891
-
-
Malik, H.S.1
Henikoff, S.2
-
25
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
Jin, C. & Felsenfeld, G. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev. 21, 1519-1529 (2007).
-
(2007)
Genes Dev.
, vol.21
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
27
-
-
0024977414
-
Five intermediate complexes in transcription initiation by RNA polymerase II
-
Buratowski, S., Hahn, S., Guarente, L. & Sharp, P.A. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell 56, 549-561 (1989).
-
(1989)
Cell
, vol.56
, pp. 549-561
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
28
-
-
0030804783
-
RNA polymerase II stalled at a thymine dimer: Footprint and effect on excision repair
-
Selby, C.P., Drapkin, R., Reinberg, D. & Sancar, A. RNA polymerase II stalled at a thymine dimer: Footprint and effect on excision repair. Nucleic Acids Res. 25, 787-793 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 787-793
-
-
Selby, C.P.1
Drapkin, R.2
Reinberg, D.3
Sancar, A.4
-
29
-
-
61849170193
-
Genome-wide profling of salt fractions maps physical properties of chromatin
-
Henikoff, S., Henikoff, J.G., Sakai, A., Loeb, G.B. & Ahmad, K. Genome-wide profling of salt fractions maps physical properties of chromatin. Genome Res. 19, 460-469 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 460-469
-
-
Henikoff, S.1
Henikoff, J.G.2
Sakai, A.3
Loeb, G.B.4
Ahmad, K.5
-
30
-
-
0019011791
-
Drosophila nucleosomes contain an unusual histone-like protein
-
Palmer, D., Snyder, L.A. & Blumenfeld, M. Drosophila nucleosomes contain an unusual histone-like protein. Proc. Natl. Acad. Sci. USA 77, 2671-2675 (1980).
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 2671-2675
-
-
Palmer, D.1
Snyder, L.A.2
Blumenfeld, M.3
-
31
-
-
69949132191
-
Chromatin organization marks exon-intron structure
-
Schwartz, S., Meshorer, E. & Ast, G. Chromatin organization marks exon-intron structure. Nat. Struct. Mol. Biol. 16, 990-995 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 990-995
-
-
Schwartz, S.1
Meshorer, E.2
Ast, G.3
-
32
-
-
36249027156
-
Recognition of trimethylated histone h3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
Sims, R.J. et al. Recognition of trimethylated histone h3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell 28, 665-676 (2007).
-
(2007)
Mol. Cell
, vol.28
, pp. 665-676
-
-
Sims, R.J.1
-
33
-
-
69949124307
-
Nucleosome positioning as a determinant of exon recognition
-
Tilgner, H. et al. Nucleosome positioning as a determinant of exon recognition. Nat. Struct. Mol. Biol. 16, 996-1001 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 996-1001
-
-
Tilgner, H.1
-
34
-
-
0021250601
-
Differential salt fractionation of active and inactive genomic domains in chicken erythrocyte
-
Rocha, E., Davie, J.R., van Holde, K.E. & Weintraub, H. Differential salt fractionation of active and inactive genomic domains in chicken erythrocyte. J. Biol. Chem. 259, 8558-8563 (1984).
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 8558-8563
-
-
Rocha, E.1
Davie, J.R.2
Van Holde, K.E.3
Weintraub, H.4
-
35
-
-
0025166038
-
Postinitiation transcriptional control in Drosophila melanogaster
-
Rougvie, A.E. & Lis, J.T. Postinitiation transcriptional control in Drosophila melanogaster. Mol. Cell 10, 6041-6045 (1990).
-
(1990)
Mol. Cell
, vol.10
, pp. 6041-6045
-
-
Rougvie, A.E.1
Lis, J.T.2
-
36
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse, G.W. et al. RNA polymerase is poised for activation across the genome. Nat. Genet. 39, 1507-1511 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
-
37
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl, P.B. et al. c-Myc regulates transcriptional pause release. Cell 141, 432-445 (2010).
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
-
38
-
-
68149158205
-
Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions
-
Henikoff, S. Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'. Nat. Genet. 41, 865-866 (2009).
-
(2009)
Nat. Genet.
, vol.41
, pp. 865-866
-
-
Henikoff, S.1
-
39
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions in the human genome
-
Jin, C. et al. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions in the human genome. Nat. Genet. 41, 941-945 (2009).
-
(2009)
Nat. Genet.
, vol.41
, pp. 941-945
-
-
Jin, C.1
-
40
-
-
0036203807
-
Nucleosome remodeling induced by RNA polymerase II: Loss of the H2A/H2B dimer during transcription
-
Kireeva, M.L. et al. Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription. Mol. Cell 9, 541-552 (2002).
-
(2002)
Mol. Cell
, vol.9
, pp. 541-552
-
-
Kireeva, M.L.1
-
41
-
-
77951169141
-
Chromatin remodeling by imitation switch (ISWI) class ATP-dependent remodelers is stimulated by histone variant H2A.Z
-
Goldman, J.A., Garlick, J.D. & Kingston, R.E. Chromatin remodeling by imitation switch (ISWI) class ATP-dependent remodelers is stimulated by histone variant H2A.Z. J. Biol. Chem. 285, 4645-4651 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 4645-4651
-
-
Goldman, J.A.1
Garlick, J.D.2
Kingston, R.E.3
-
42
-
-
0026713778
-
What happens to nucleosomes during transcription?
-
van Holde, K.E., Lohr, D.E. & Robert, C. What happens to nucleosomes during transcription? J. Biol. Chem. 267, 2837-2840 (1992).
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 2837-2840
-
-
Van Holde, K.E.1
Lohr, D.E.2
Robert, C.3
-
43
-
-
38849132828
-
The functional response of upstream DNA to dynamic supercoiling in vivo
-
Kouzine, F., Sanford, S., Elisha-Feil, Z. & Levens, D. The functional response of upstream DNA to dynamic supercoiling in vivo. Nat. Struct. Mol. Biol. 15, 146-154 (2008).
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 146-154
-
-
Kouzine, F.1
Sanford, S.2
Elisha-Feil, Z.3
Levens, D.4
-
44
-
-
34250803868
-
Nucleosome chiral transition under positive torsional stress in single chromatin fbers
-
Bancaud, A. et al. Nucleosome chiral transition under positive torsional stress in single chromatin fbers. Mol. Cell 27, 135-147 (2007).
-
(2007)
Mol. Cell
, vol.27
, pp. 135-147
-
-
Bancaud, A.1
-
45
-
-
0030028981
-
Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro
-
Wang, Z. & Droge, P. Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro. EMBO J. 15, 581-589 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 581-589
-
-
Wang, Z.1
Droge, P.2
-
46
-
-
34147206187
-
Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner
-
Galburt, E.A. et al. Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner. Nature 446, 820-823 (2007).
-
(2007)
Nature
, vol.446
, pp. 820-823
-
-
Galburt, E.A.1
-
47
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert, I. et al. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446, 572-576 (2007).
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
-
48
-
-
3242880238
-
H2AX: The histone guardian of the genome
-
Fernandez-Capetillo, O., Lee, A., Nussenzweig, M. & Nussenzweig, A. H2AX: the histone guardian of the genome. DNA Repair (Amst.) 3, 959-967 (2004).
-
(2004)
DNA Repair (Amst.)
, vol.3
, pp. 959-967
-
-
Fernandez-Capetillo, O.1
Lee, A.2
Nussenzweig, M.3
Nussenzweig, A.4
-
49
-
-
0036712095
-
DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis
-
Madigan, J.P., Chotkowski, H.L. & Glaser, R.L. DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis. Nucleic Acids Res. 30, 3698-3705 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3698-3705
-
-
Madigan, J.P.1
Chotkowski, H.L.2
Glaser, R.L.3
-
50
-
-
27144510368
-
Genome-scale profling of histone H3.3 replacement patterns
-
Mito, Y., Henikoff, J.G. & Henikoff, S. Genome-scale profling of histone H3.3 replacement patterns. Nat. Genet. 37, 1090-1097 (2005).
-
(2005)
Nat. Genet.
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
51
-
-
61849170193
-
Genome-wide profling of salt fractions maps physical properties of chromatin
-
Henikoff, S., Henikoff, J.G., Sakai, A., Loeb, G.B. & Ahmad, K. Genome-wide profling of salt fractions maps physical properties of chromatin. Genome Res. 19, 460-469 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 460-469
-
-
Henikoff, S.1
Henikoff, J.G.2
Sakai, A.3
Loeb, G.B.4
Ahmad, K.5
-
52
-
-
77957729191
-
Baculovirus-encoded protein expression for epigenomic profling in Drosophila cells
-
Bryson, T.D., Weber, C.M. & Henikoff, S. Baculovirus-encoded protein expression for epigenomic profling in Drosophila cells. Fly (Austin) 4, 258-265 (2010).
-
(2010)
Fly (Austin)
, vol.4
, pp. 258-265
-
-
Bryson, T.D.1
Weber, C.M.2
Henikoff, S.3
-
53
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring, M., Bubb, K. & Henikoff, S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324, 1447-1451 (2009).
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.2
Henikoff, S.3
-
54
-
-
33750442876
-
Large-scale turnover of functional transcription factor binding sites in Drosophila
-
Moses, A.M. et al. Large-scale turnover of functional transcription factor binding sites in Drosophila. PLOS Comput. Biol. 2, e130 (2006).
-
(2006)
PLOS Comput. Biol.
, vol.2
-
-
Moses, A.M.1
-
55
-
-
33745225872
-
Genome-wide analysis of Polycomb targets in Drosophila melanogaster
-
Schwartz, Y.B. et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster. Nat. Genet. 38, 700-705 (2006).
-
(2006)
Nat. Genet.
, vol.38
, pp. 700-705
-
-
Schwartz, Y.B.1
|