SCOPUS 정보 검색 플랫폼

Volumn 10, Issue 21, 2012, Pages 4186-4200

Conformational mapping and energetics of saccharide-aromatic residue interactions: Implications for the discrimination of anomers and epimers and in protein engineering

(3) Kumari, Manju a Sunoj, Raghavan B a Balaji, Petety V a

a INDIAN INSTITUTE OF TECHNOLOGY BOMBAY (India)

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC COMPOUNDS; BIOCATALYSTS; BIOCHEMICAL ENGINEERING; GENETIC ENGINEERING; SUGARS;

ANOMERICS; ANOMERS; AROMATIC RESIDUES; EPIMERS; EXPERIMENTAL STUDIES; FREE ROTATION; GEOMETRY OPTIMIZATION; MP2/6-31G; OH GROUP; OPTIMIZED GEOMETRIES; POSITION-ORIENTATION; PROTEIN DESIGN; PROTEIN ENGINEERING; STACKING INTERACTION;

AROMATIZATION;

EID: 84861899174 PISSN: 14770520 EISSN: None Source Type: Journal
DOI: 10.1039/c2ob25182e Document Type: Article

Times cited : (12)

References (57)

1
- 79959975895
- P. V. Balaji Mini-Rev. Org. Chem. 2011 8 222
- (2011) Mini-Rev. Org. Chem. , vol.8 , pp. 222
- Balaji, P.V.¹

2
- 79960935413
- M. Nishio Phys. Chem. Chem. Phys. 2011 13 13873
- (2011) Phys. Chem. Chem. Phys. , vol.13 , pp. 13873
- Nishio, M.¹

3
- 79551502426
- P. Wildberger C. Luley-Goedl B. Nidetzky FEBS Lett. 2011 585 499
- (2011) FEBS Lett. , vol.585 , pp. 499
- Wildberger, P.¹ Luley-Goedl, C.² Nidetzky, B.³

4
- 77249090720
- S. Jin Y. Cheng S. Reid M. Li B. Wang Med. Res. Rev. 2010 30 171
- (2010) Med. Res. Rev. , vol.30 , pp. 171
- Jin, S.¹ Cheng, Y.² Reid, S.³ Li, M.⁴ Wang, B.⁵

5
- 63049133908
- M. Mazik Chem. Soc. Rev. 2009 38 935
- (2009) Chem. Soc. Rev. , vol.38 , pp. 935
- Mazik, M.¹

6
- 52449106759
- M. D. Diaz M. C. Fernandez-Alonso G. Cuevas F. J. Canada J. Jimenez-Barbero Pure Appl. Chem. 2008 80 1827
- (2008) Pure Appl. Chem. , vol.80 , pp. 1827
- Diaz, M.D.¹ Fernandez-Alonso, M.C.² Cuevas, G.³ Canada, F.J.⁴ Jimenez-Barbero, J.⁵

7
- 36749073907
- J. Fantini Curr. Med. Chem. 2007 14 2911
- (2007) Curr. Med. Chem. , vol.14 , pp. 2911
- Fantini, J.¹

8
- 33845498615
- M. Machovik S. Janecek Cell. Mol. Life Sci. 2006 63 2710
- (2006) Cell. Mol. Life Sci. , vol.63 , pp. 2710
- MacHovik, M.¹ Janecek, S.²

9
- 0029644059
- R. Dutzler Y. F. Wang P. Rizkallah J. P. Rosenbusch T. Schirmer Structure (Cambridge, MA, U. S.) 1996 4 127
- (1996) Structure (Cambridge, MA, U. S.) , vol.4 , pp. 127
- Dutzler, R.¹ Wang, Y.F.² Rizkallah, P.³ Rosenbusch, J.P.⁴ Schirmer, T.⁵

10
- 33847317012
- A. Malik S. Ahmad BMC Struct. Biol. 2007 7 1
- (2007) BMC Struct. Biol. , vol.7 , pp. 1
- Malik, A.¹ Ahmad, S.²

11
- 38949101614
- L. Bautista-Ibanez K. Ramirez-Gualito B. Quiroz-Garcia A. Rojas-Aguilar G. Cuevas J. Org. Chem. 2008 73 849
- (2008) J. Org. Chem. , vol.73 , pp. 849
- Bautista-Ibanez, L.¹ Ramirez-Gualito, K.² Quiroz-Garcia, B.³ Rojas-Aguilar, A.⁴ Cuevas, G.⁵

12
- 53849089283
- S. Vandenbussche D. Diaz M. C. Fernandez-Alonso W. Pan S. P. Vincent G. Cuevas F. J. Canada J. Jimenez-Barbero K. Bartik Chem.-Eur. J. 2008 14 7570
- (2008) Chem.-Eur. J. , vol.14 , pp. 7570
- Vandenbussche, S.¹ Diaz, D.² Fernandez-Alonso, M.C.³ Pan, W.⁴ Vincent, S.P.⁵ Cuevas, G.⁶ Canada, F.J.⁷ Jimenez-Barbero, J.⁸ Bartik, K.⁹

13
- 19744371399
- M. C. Fernandez-Alonso F. J. Canada J. Jimenez-Barbero G. Cuevas J. Am. Chem. Soc. 2005 127 7379
- (2005) J. Am. Chem. Soc. , vol.127 , pp. 7379
- Fernandez-Alonso, M.C.¹ Canada, F.J.² Jimenez-Barbero, J.³ Cuevas, G.⁴

14
- 33947202577
- G. Terraneo D. Potenza A. Canales J. Jimenez-Barbero K. K. Baldridge A. Bernardi J. Am. Chem. Soc. 2007 129 2890
- (2007) J. Am. Chem. Soc. , vol.129 , pp. 2890
- Terraneo, G.¹ Potenza, D.² Canales, A.³ Jimenez-Barbero, J.⁴ Baldridge, K.K.⁵ Bernardi, A.⁶

15
- 55549090031
- Z. R. Laughrey S. E. Kiehna A. J. Riemen M. L. Waters J. Am. Chem. Soc. 2008 130 14625
- (2008) J. Am. Chem. Soc. , vol.130 , pp. 14625
- Laughrey, Z.R.¹ Kiehna, S.E.² Riemen, A.J.³ Waters, M.L.⁴

16
- 78650982485
- E. J. Cocinero P. Çarçabal T. D. Vaden J. P. Simons B. J. Davis Nature 2011 469 76
- (2011) Nature , vol.469 , pp. 76
- Cocinero, E.J.¹ Çarçabal, P.² Vaden, T.D.³ Simons, J.P.⁴ Davis, B.J.⁵

17
- 79953045194
- E. J. Cocinero P. Çarçabal T. D. Vaden B. J. Davis J. P. Simons J. Am. Chem. Soc. 2011 133 4548
- (2011) J. Am. Chem. Soc. , vol.133 , pp. 4548
- Cocinero, E.J.¹ Çarçabal, P.² Vaden, T.D.³ Davis, B.J.⁴ Simons, J.P.⁵

18
- 34547919222
- E. C. Stanca-Kaposta D. P. Gamblin J. Screen B. Liu L. C. Snoek B. G. Davis J. P. Simons Phys. Chem. Chem. Phys. 2007 9 4444
- (2007) Phys. Chem. Chem. Phys. , vol.9 , pp. 4444
- Stanca-Kaposta, E.C.¹ Gamblin, D.P.² Screen, J.³ Liu, B.⁴ Snoek, L.C.⁵ Davis, B.G.⁶ Simons, J.P.⁷

19
- 72449187087
- K. Ramirez-Gualito R. Alonso-Rios B. Quiroz-Garcia A. Rojas-Aguilar D. Diaz J. Jimenez-Barbero G. Cuevas J. Am. Chem. Soc. 2009 131 18129
- (2009) J. Am. Chem. Soc. , vol.131 , pp. 18129
- Ramirez-Gualito, K.¹ Alonso-Rios, R.² Quiroz-Garcia, B.³ Rojas-Aguilar, A.⁴ Diaz, D.⁵ Jimenez-Barbero, J.⁶ Cuevas, G.⁷

20
- 27944482492
- M. I. Chavez C. Andreu P. Vidal N. Aboitiz F. Freire P. Groves J. L. Asensio G. Asensio M. Muraki F. J. Canada J. Jimenez-Barbero Chem.-Eur. J. 2005 11 7060
- (2005) Chem.-Eur. J. , vol.11 , pp. 7060
- Chavez, M.I.¹ Andreu, C.² Vidal, P.³ Aboitiz, N.⁴ Freire, F.⁵ Groves, P.⁶ Asensio, J.L.⁷ Asensio, G.⁸ Muraki, M.⁹ Canada, F.J.¹⁰ Jimenez-Barbero, J.¹¹

21
- 4444261821
- V. Spiwok P. Lipovova T. Skalova E. Buchtelova J. Hasek B. Kralova Carbohydr. Res. 2004 339 2275
- (2004) Carbohydr. Res. , vol.339 , pp. 2275
- Spiwok, V.¹ Lipovova, P.² Skalova, T.³ Buchtelova, E.⁴ Hasek, J.⁵ Kralova, B.⁶

22
- 33744832207
- V. Spiwok P. Lipovova T. Skalova E. Vondrackova J. Dohnalek J. Hasek B. Kralova J. Comput.-Aided Mol. Des. 2006 19 887
- (2006) J. Comput.-Aided Mol. Des. , vol.19 , pp. 887
- Spiwok, V.¹ Lipovova, P.² Skalova, T.³ Vondrackova, E.⁴ Dohnalek, J.⁵ Hasek, J.⁶ Kralova, B.⁷

23
- 77955665196
- M. N. A. Mohamed H. D. Watts J. Guo J. M. Catchmark J. D. Kubicki Carbohydr. Res. 2010 345 1741
- (2010) Carbohydr. Res. , vol.345 , pp. 1741
- Mohamed, M.N.A.¹ Watts, H.D.² Guo, J.³ Catchmark, J.M.⁴ Kubicki, J.D.⁵

24
- 20444429796
- M. S. Sujatha Y. U. Sasidhar P. V. Balaji Biochemistry 2005 44 8554
- (2005) Biochemistry , vol.44 , pp. 8554
- Sujatha, M.S.¹ Sasidhar, Y.U.² Balaji, P.V.³

25
- 34249321218
- M. S. Sujatha Y. U. Sasidhar P. V. Balaji J. Mol. Struct. (Theochem) 2007 814 11
- (2007) J. Mol. Struct. (Theochem) , vol.814 , pp. 11
- Sujatha, M.S.¹ Sasidhar, Y.U.² Balaji, P.V.³

26
- 66349115086
- S. Tsuzuki T. Uchimaru M. Mikami J. Phys. Chem. B 2009 113 5617
- (2009) J. Phys. Chem. B , vol.113 , pp. 5617
- Tsuzuki, S.¹ Uchimaru, T.² Mikami, M.³

27
- 80054712736
- S. Tsuzuki T. Uchimaru M. Mikami J. Phys. Chem. A 2011 115 11256
- (2011) J. Phys. Chem. A , vol.115 , pp. 11256
- Tsuzuki, S.¹ Uchimaru, T.² Mikami, M.³

28
- 77950259996
- R. M. Kumar M. Elango V. Subramanian J. Phys. Chem. A 2010 114 4313
- (2010) J. Phys. Chem. A , vol.114 , pp. 4313
- Kumar, R.M.¹ Elango, M.² Subramanian, V.³

29
- 55649085253
- R. K. Raju A. Ramraj M. A. Vincent I. H. Hillier N. A. Burton Phys. Chem. Chem. Phys. 2008 10 6500
- (2008) Phys. Chem. Chem. Phys. , vol.10 , pp. 6500
- Raju, R.K.¹ Ramraj, A.² Vincent, M.A.³ Hillier, I.H.⁴ Burton, N.A.⁵

30
- 79955590010
- S. Kozmon R. Matuska V. Spiwok J. Koca Chem.-Eur. J. 2011 17 5680
- (2011) Chem.-Eur. J. , vol.17 , pp. 5680
- Kozmon, S.¹ Matuska, R.² Spiwok, V.³ Koca, J.⁴

31
- 0036710071
- R. Dutzler T. Schirmer T. Karplus S. Fischer Structure (Cambridge, MA, U. S.) 2002 10 1273
- (2002) Structure (Cambridge, MA, U. S.) , vol.10 , pp. 1273
- Dutzler, R.¹ Schirmer, T.² Karplus, T.³ Fischer, S.⁴

32
- 79952909685
- M. Kumari P. V. Balaji R. B. Sunoj Phys. Chem. Chem. Phys. 2011 13 6517
- (2011) Phys. Chem. Chem. Phys. , vol.13 , pp. 6517
- Kumari, M.¹ Balaji, P.V.² Sunoj, R.B.³

33
- 1442300119
- M. S. Sujatha P. V. Balaji Proteins: Struct., Funct., Bioinf. 2004 55 44
- (2004) Proteins: Struct., Funct., Bioinf. , vol.55 , pp. 44
- Sujatha, M.S.¹ Balaji, P.V.²

34
- 0037039955
- R. Stenutz I. Carmichael G. Widmalm A. S. Serianni J. Org. Chem. 2002 67 949
- (2002) J. Org. Chem. , vol.67 , pp. 949
- Stenutz, R.¹ Carmichael, I.² Widmalm, G.³ Serianni, A.S.⁴

35
- 0028421133
- L. Poppe H. van Halbeek Nat. Struct. Biol. 1994 1 215
- (1994) Nat. Struct. Biol. , vol.1 , pp. 215
- Poppe, L.¹ Van Halbeek, H.²

36
- 34548714101
- Refer to Supporting Information of ref. 19
- H. Zhao Q. Pan W. Zhang I. Carmichael A. S. Serianni J. Org. Chem. 2007 72 7071
- (2007) J. Org. Chem. , vol.72 , pp. 7071
- Zhao, H.¹ Pan, Q.² Zhang, W.³ Carmichael, I.⁴ Serianni, A.S.⁵

37
- 17444404162
- S. Rajagopal S. Vishveshwara FEBS Lett. 2005 272 1819
- (2005) FEBS Lett. , vol.272 , pp. 1819
- Rajagopal, S.¹ Vishveshwara, S.²

38
- 34347226647
- I. Rozas Phys. Chem. Chem. Phys. 2007 9 2782
- (2007) Phys. Chem. Chem. Phys. , vol.9 , pp. 2782
- Rozas, I.¹

39
- 0141791283
- M. Fujihashi D. H. Peapus N. Kamiya Y. Nagata K. Miki Biochemistry 2003 42 11093
- (2003) Biochemistry , vol.42 , pp. 11093
- Fujihashi, M.¹ Peapus, D.H.² Kamiya, N.³ Nagata, Y.⁴ Miki, K.⁵

40
- 0038373357
- M. Wimmerova E. Mitchell J. F. Sanchez C. Gautier A. Imberty J. Biol. Chem. 2003 278 27059
- (2003) J. Biol. Chem. , vol.278 , pp. 27059
- Wimmerova, M.¹ Mitchell, E.² Sanchez, J.F.³ Gautier, C.⁴ Imberty, A.⁵

41
- 23044503939
- N. Kostlanova E. P. Mitchell H. Lortat-Jacob S. Oscarson M. Lahmann N. Gilboa-Garber G. Chambat M. Wimmerova A. Imberty J. Biol. Chem. 2005 280 27839
- (2005) J. Biol. Chem. , vol.280 , pp. 27839
- Kostlanova, N.¹ Mitchell, E.P.² Lortat-Jacob, H.³ Oscarson, S.⁴ Lahmann, M.⁵ Gilboa-Garber, N.⁶ Chambat, G.⁷ Wimmerova, M.⁸ Imberty, A.⁹

42
- 77956330672
- K. Wendler J. Thar S. Zahn B. Kirchner J. Phys. Chem. A 2010 114 9529
- (2010) J. Phys. Chem. A , vol.114 , pp. 9529
- Wendler, K.¹ Thar, J.² Zahn, S.³ Kirchner, B.⁴

43
- 0004140795
- W. H. Freeman, New York, 2nd edn, p. 148
- T. E. Creighton, Proteins: Structures and Molecular Properties, W. H. Freeman, New York, 2nd edn, 1993, p. 148
- (1993) Proteins: Structures and Molecular Properties
- Creighton, T.E.¹

44
- 0003653494
- Oxford University Press, New York, p. 12
- G. R. Desiraju and T. Steiner, The Weak Hydrogen Bond in Structural Chemistry and Biology, Oxford University Press, New York, 1999, p. 12
- (1999) The Weak Hydrogen Bond in Structural Chemistry and Biology
- Desiraju, G.R.¹ Steiner, T.²

45
- 0003818541
- W. H. Freeman, New York, 3rd edn, p. 330
- A. Fersht, Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding, W. H. Freeman, New York, 3rd edn, 1999, p. 330
- (1999) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding
- Fersht, A.¹

46
- 5644248082
- G. Buemi F. Zuccarello Chem. Phys. 2004 306 115
- (2004) Chem. Phys. , vol.306 , pp. 115
- Buemi, G.¹ Zuccarello, F.²

47
- 3342894992
- A. Muller S. Leutwyler J. Phys. Chem. A 2004 108 6156
- (2004) J. Phys. Chem. A , vol.108 , pp. 6156
- Muller, A.¹ Leutwyler, S.²

48
- 0242363173
- S. Y. Shen D. Y. Yang H. L. Selzle E. W. Schlag Proc. Natl. Acad. Sci. U. S. A. 2003 100 12683
- (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 12683
- Shen, S.Y.¹ Yang, D.Y.² Selzle, H.L.³ Schlag, E.W.⁴

49
- 84855345518
- LLC, New York
- MacroModel, version 9.5, Schrödinger, LLC, New York, 2007
- (2007) MacroModel, Version 9.5, Schrödinger

50
- 84893169025
- M. W. Schmidt K. K. Baldridge J. A. Boatz S. T. Elbert M. S. Gordon J. H. Jensen S. Koseki N. Matsunaga K. A. Nguyen S. Su T. L. Windus M. Dupuis J. A. Montgomery J. Comput. Chem. 1993 14 1347
- (1993) J. Comput. Chem. , vol.14 , pp. 1347
- Schmidt, M.W.¹ Baldridge, K.K.² Boatz, J.A.³ Elbert, S.T.⁴ Gordon, M.S.⁵ Jensen, J.H.⁶ Koseki, S.⁷ Matsunaga, N.⁸ Nguyen, K.A.⁹ Su, S.¹⁰ Windus, T.L.¹¹ Dupuis, M.¹² Montgomery, J.A.¹³

51
- 79952130294
- Gaussian, Inc., Wallingford CT
- M. J. Frisch, et al., GAUSSIAN 09 (Revisions A.02 and E.01), Gaussian, Inc., Wallingford CT, 2009
- (2009) GAUSSIAN 09 (Revisions A.02 and E.01)
- Frisch, M.J.¹

52
- 11244282931
- Gaussian, Inc., Wallingford CT,. (See ESI for the full list)
- M. J. Frisch, et al., GAUSSIAN 03 (Revisions C.02 and E.01), Gaussian, Inc., Wallingford CT, 2004
- (2004) GAUSSIAN 03 (Revisions C.02 and E.01)
- Frisch, M.J.¹

53
- 0037202606
- F. Biegler-König J. Schoenbohm J. Comput. Chem. 2002 23 1489
- (2002) J. Comput. Chem. , vol.23 , pp. 1489
- Biegler-König, F.¹ Schoenbohm, J.²

54
- 27744547412
- L. Sobczyk S. J. Grabowski T. M. Krygowski Chem. Rev. 2005 105 3513
- (2005) Chem. Rev. , vol.105 , pp. 3513
- Sobczyk, L.¹ Grabowski, S.J.² Krygowski, T.M.³

55
- 84890021933
- S. F. Boys F. Bernardi Mol. Phys. 1970 19 553
- (1970) Mol. Phys. , vol.19 , pp. 553
- Boys, S.F.¹ Bernardi, F.²

56
- 0031557010
- K. S. Kim Y. J. Lee H. S. Choi J. Kim J. H. Jang Chem. Phys. Lett. 1997 265 497
- (1997) Chem. Phys. Lett. , vol.265 , pp. 497
- Kim, K.S.¹ Lee, Y.J.² Choi, H.S.³ Kim, J.⁴ Jang, J.H.⁵

57
- 0004157499
- Clarendon Press, Oxford
- R. F. W. Bader, Atoms in Molecules: A Quantum Theory, Clarendon Press, Oxford, 1990
- (1990) Atoms in Molecules: A Quantum Theory
- Bader, R.F.W.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.