-
1
-
-
0026458015
-
Transport proteins in bacteria: Common themes in their design
-
Nikaido H., Saier M.H.J. Transport proteins in bacteria. common themes in their design Science. 258:1992;936-942.
-
(1992)
Science
, vol.258
, pp. 936-942
-
-
Nikaido, H.1
Saier, M.H.J.2
-
2
-
-
0031857538
-
General and specific porins from bacterial outer membranes
-
Schirmer T. General and specific porins from bacterial outer membranes. J. Struct. Biol. 121:1998;101-109.
-
(1998)
J. Struct. Biol.
, vol.121
, pp. 101-109
-
-
Schirmer, T.1
-
3
-
-
0005189757
-
In
-
W.N. Konings, H.R. Kaback, & J.S. Lolkema. Amsterdam: Elsevier Science B.V
-
Rosenbusch J.P. In. Konings W.N., Kaback H.R., Lolkema J.S. Handbook of Biological Physics, Volume 2. 1996;Elsevier Science B.V, Amsterdam., pp. 599-614.
-
(1996)
Handbook of Biological Physics, Volume 2
, pp. 599-614
-
-
Rosenbusch, J.P.1
-
4
-
-
0030220261
-
Porins: General to specific, native to engineered passive pores
-
Schulz G.E. Porins. general to specific, native to engineered passive pores Curr. Opin. Struct. Biol. 6:1996;485-490.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 485-490
-
-
Schulz, G.E.1
-
5
-
-
0029907916
-
Structure and functional mechanism of porins
-
Jap B.K., Walian P.J. Structure and functional mechanism of porins. Physiol. Rev. 76:1996;1073-1088.
-
(1996)
Physiol. Rev.
, vol.76
, pp. 1073-1088
-
-
Jap, B.K.1
Walian, P.J.2
-
6
-
-
0031985785
-
Structure of the sucrose-specific porin ScrY from Salmonella typhimurium and its complex with sucrose
-
Forst D., Welte W., Wacker T., Diederichs K. Structure of the sucrose-specific porin ScrY from Salmonella typhimurium and its complex with sucrose. Nat. Struct. Biol. 5:1998;37-46.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 37-46
-
-
Forst, D.1
Welte, W.2
Wacker, T.3
Diederichs, K.4
-
7
-
-
0009551491
-
Specificity of diffusion channels produced by lambda phage receptor protein of Escherichia coli
-
Luckey M., Nikaido H. Specificity of diffusion channels produced by lambda phage receptor protein of Escherichia coli. Proc. Natl. Acad. Sci. USA. 77:1980;167-171.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 167-171
-
-
Luckey, M.1
Nikaido, H.2
-
8
-
-
0027457784
-
De-repression of LamB protein facilitates outer membrane permeation of carbohydrates into Escherichia coli under conditions of nutrient stress
-
Death A., Notley L., Ferenci T. De-repression of LamB protein facilitates outer membrane permeation of carbohydrates into Escherichia coli under conditions of nutrient stress. J. Bacteriol. 175:1993;1475-1483.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 1475-1483
-
-
Death, A.1
Notley, L.2
Ferenci, T.3
-
9
-
-
0005143349
-
In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology
-
Washington, DC: American Society of Microbiology 1482-1502.pp
-
Schwartz M. In Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology F.C. Neidhardt. 1987;American Society of Microbiology, Washington, DC. 1482-1502.pp.
-
(1987)
F.C. Neidhardt
-
-
Schwartz, M.1
-
10
-
-
0023472905
-
Mechanism of sugar transport through the sugar-specific LamB channel of Escherichia coli outer membrane
-
Benz R., Schmid A., Greetje H., Vos-Scheperkeuter H. Mechanism of sugar transport through the sugar-specific LamB channel of Escherichia coli outer membrane. J. Membr. Biol. 100:1987;21-29.
-
(1987)
J. Membr. Biol.
, vol.100
, pp. 21-29
-
-
Benz, R.1
Schmid, A.2
Greetje, H.3
Vos-Scheperkeuter, H.4
-
11
-
-
0028926959
-
Evaluation of the rate constants of sugar transport through maltoporin (LamB) of E. coli from the sugar-induced current noise
-
Andersen C., Jordy M., Benz R. Evaluation of the rate constants of sugar transport through maltoporin (LamB) of E. coli from the sugar-induced current noise. J. Gen. Physiol. 105:1995;385-401.
-
(1995)
J. Gen. Physiol.
, vol.105
, pp. 385-401
-
-
Andersen, C.1
Jordy, M.2
Benz, R.3
-
12
-
-
0029644059
-
Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway
-
Dutzler R., Wang Y.-F., Rizkallah P.J., Rosenbusch J.P., Schirmer T. Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway. Structure. 4:1996;127-134.
-
(1996)
Structure
, vol.4
, pp. 127-134
-
-
Dutzler, R.1
Wang, Y.-F.2
Rizkallah, P.J.3
Rosenbusch, J.P.4
Schirmer, T.5
-
13
-
-
0028946962
-
Structural basis for sugar translocation through maltoporin channels at 3.1 Å resolution
-
Schirmer T., Keller T.A., Wang Y.-F., Rosenbusch J.P. Structural basis for sugar translocation through maltoporin channels at 3.1 Å resolution. Science. 267:1995;512-514.
-
(1995)
Science
, vol.267
, pp. 512-514
-
-
Schirmer, T.1
Keller, T.A.2
Wang, Y.-F.3
Rosenbusch, J.P.4
-
14
-
-
0031557404
-
Structure of maltoporin from Salmonella typhimurium ligated with a nitrophenyl-maltotrioside
-
Meyer J.E.W., Hofnung M., Schulz G.E. Structure of maltoporin from Salmonella typhimurium ligated with a nitrophenyl-maltotrioside. J. Mol. Biol. 266:1997;761-775.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 761-775
-
-
Meyer, J.E.W.1
Hofnung, M.2
Schulz, G.E.3
-
15
-
-
0031565721
-
Channel specificity: Structural basis for sugar discrimination and differential flux rates in maltoporin
-
Wang Y.F., Dutzler R., Rizkallah P.J., Rosenbusch J.P., Schirmer T. Channel specificity. structural basis for sugar discrimination and differential flux rates in maltoporin J. Mol. Biol. 272:1997;56-63.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 56-63
-
-
Wang, Y.F.1
Dutzler, R.2
Rizkallah, P.J.3
Rosenbusch, J.P.4
Schirmer, T.5
-
16
-
-
0000231955
-
Conjugate peak refinement: An algorithm for finding reaction paths and accurate transition states in systems with many degrees of freedom
-
Fischer S., Karplus M. Conjugate peak refinement. an algorithm for finding reaction paths and accurate transition states in systems with many degrees of freedom Chem. Phys. Lett. 194:1992;252-261.
-
(1992)
Chem. Phys. Lett.
, vol.194
, pp. 252-261
-
-
Fischer, S.1
Karplus, M.2
-
17
-
-
0027742843
-
A mechanism for rotamase catalysis by the FK506 binding protein (FKBP)
-
Fischer S., Michnick S., Karplus M. A mechanism for rotamase catalysis by the FK506 binding protein (FKBP). Biochemistry. 32:1993;13830-13837.
-
(1993)
Biochemistry
, vol.32
, pp. 13830-13837
-
-
Fischer, S.1
Michnick, S.2
Karplus, M.3
-
18
-
-
0034700288
-
Pathway for large-scale conformational change in annexin V
-
Sopkova J., Fischer S., Guilbert C., Lewit-Bentley A., Smith J.C. Pathway for large-scale conformational change in annexin V. Biochemistry. 39:2000;14065-14074.
-
(2000)
Biochemistry
, vol.39
, pp. 14065-14074
-
-
Sopkova, J.1
Fischer, S.2
Guilbert, C.3
Lewit-Bentley, A.4
Smith, J.C.5
-
19
-
-
0000715079
-
Calculation of the reaction pathway for the aromatic ring-flip in methotrexate complexed to dihydrofolate reductase
-
Verma C.S., Fischer S., Caves L., Roberts G.C.K., Hubbard R.E. Calculation of the reaction pathway for the aromatic ring-flip in methotrexate complexed to dihydrofolate reductase. J. Phys. Chem. 100:1996;2510-2518.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 2510-2518
-
-
Verma, C.S.1
Fischer, S.2
Caves, L.3
Roberts, G.C.K.4
Hubbard, R.E.5
-
20
-
-
0001455821
-
Rotation of structural water inside a protein: Calculation of the rate and vibrational entropy of activation
-
Fischer S., Verma C.S., Hubbard R.E. Rotation of structural water inside a protein. calculation of the rate and vibrational entropy of activation J. Phys. Chem. 102:1998;1797-1805.
-
(1998)
J. Phys. Chem.
, vol.102
, pp. 1797-1805
-
-
Fischer, S.1
Verma, C.S.2
Hubbard, R.E.3
-
21
-
-
0344931796
-
Retinoic acid receptor: A simulation analysis of retinoic acid binding and resulting conformational conformational changes
-
Blondel A., Renaud J.-P., Fischer S., Moras D., Karplus M. Retinoic acid receptor. a simulation analysis of retinoic acid binding and resulting conformational conformational changes J. Mol. Biol. 291:1999;101-115.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 101-115
-
-
Blondel, A.1
Renaud, J.-P.2
Fischer, S.3
Moras, D.4
Karplus, M.5
-
22
-
-
0034655949
-
The morph server: A standardized system for analyzing and visualizing macromolecular motions in a database framework
-
Krebs W.G., Gerstein M. The morph server. a standardized system for analyzing and visualizing macromolecular motions in a database framework Nucleic Acids Res. 28:2000;1665-1675.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1665-1675
-
-
Krebs, W.G.1
Gerstein, M.2
-
23
-
-
0029623184
-
Computational methods to predict binding free energy in ligand-receptor complexes
-
Ajay Murcko Computational methods to predict binding free energy in ligand-receptor complexes. J. Med. Chem. 38:1995;4953-4967.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4953-4967
-
-
Ajay Murcko1
-
24
-
-
0038833031
-
Determinants of ligand binding to cAMP-dependent protein kinase
-
Hünenberger P.H., Helms V., Narayana N., Taylor S.S., McCammon J.A. Determinants of ligand binding to cAMP-dependent protein kinase. Biochemistry. 38:1999;2358-2366.
-
(1999)
Biochemistry
, vol.38
, pp. 2358-2366
-
-
Hünenberger, P.H.1
Helms, V.2
Narayana, N.3
Taylor, S.S.4
McCammon, J.A.5
-
25
-
-
0030902082
-
Energy profile of maltooligosaccharide permeation through maltoporin as derived from the structure and from a statistical analysis of saccharide-protein interactions
-
Meyer J.E., Schulz G.E. Energy profile of maltooligosaccharide permeation through maltoporin as derived from the structure and from a statistical analysis of saccharide-protein interactions. Protein Sci. 6:1997;1084-1091.
-
(1997)
Protein Sci.
, vol.6
, pp. 1084-1091
-
-
Meyer, J.E.1
Schulz, G.E.2
-
26
-
-
0034733718
-
Sugar transport through maltoporin of Escherichia coli. Role of polar tracks
-
Dumas F., Koebnik R., Winterhalter M., Van Gelder P. Sugar transport through maltoporin of Escherichia coli. Role of polar tracks. J. Biol. Chem. 275:2000;19747-19751.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19747-19751
-
-
Dumas, F.1
Koebnik, R.2
Winterhalter, M.3
Van Gelder, P.4
-
27
-
-
33748583013
-
Ion transport in a gramicidin-like channel: Dynamics and mobility
-
Roux B., Karplus M. Ion transport in a gramicidin-like channel. dynamics and mobility J. Phys. Chem. 95:1991;4856-4868.
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 4856-4868
-
-
Roux, B.1
Karplus, M.2
-
28
-
-
84986512474
-
Charmm: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., Karplus M. Charmm. a program for macromolecular energy, minimization, and dynamics calculations J. Comp. Chem. 4:1983;187-217.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
29
-
-
0041784950
-
All-atom empirical potential for molecular modelling and dynamics studies of proteins
-
MacKerell A.D. Jr., Bashford D., Bellot M., Dunbrack R.L. Jr., Evanseck J.D., Field M.J., Fischer S., Gao J., Ha S., McCarthy D.J.et al. All-atom empirical potential for molecular modelling and dynamics studies of proteins. J. Phys. Chem. B. 102:1998;3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell A.D., Jr.1
Bashford, D.2
Bellot, M.3
Dunbrack R.L., Jr.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Ha, S.9
McCarthy, D.J.10
-
30
-
-
0029633152
-
Elecrostatics and diffusion in solution: Simulation with the University of Houston Brownian Dynamics program
-
Madura J.D., Briggs J.M., Wade R., Davis M.E., Luty B.A., Ilin A., Antonsiewicz J., Gilson M.K., Bagheri B., Scott L.R.et al. Elecrostatics and diffusion in solution. simulation with the University of Houston Brownian Dynamics program Comp. Phys. Comm. 91:1999;57-95.
-
(1999)
Comp. Phys. Comm.
, vol.91
, pp. 57-95
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antonsiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
-
32
-
-
0000923619
-
Continuous treatment of long-range interactions in free energy calculations. application to protein-ligand binding
-
Simonson T., Archontis G., Karplus M. Continuous treatment of long-range interactions in free energy calculations. application to protein-ligand binding. J. Phys. Chem. 41:1997;8347-8360.
-
(1997)
J. Phys. Chem.
, vol.41
, pp. 8347-8360
-
-
Simonson, T.1
Archontis, G.2
Karplus, M.3
-
33
-
-
0013517679
-
Reaction path study of helix formation in tetrapeptides: Effect of side chains
-
Choi C., Elber R. Reaction path study of helix formation in tetrapeptides. effect of side chains J. Chem. Phys. 94:1991;751-759.
-
(1991)
J. Chem. Phys.
, vol.94
, pp. 751-759
-
-
Choi, C.1
Elber, R.2
-
34
-
-
0024264819
-
Diffusion-collision model for the folding kinetics of myoglobin
-
Bashford D., Cohen F.E., Karplus M., Kuntz I.D., Weaver D.L. Diffusion-collision model for the folding kinetics of myoglobin. Proteins. 4:1988;211-227.
-
(1988)
Proteins
, vol.4
, pp. 211-227
-
-
Bashford, D.1
Cohen, F.E.2
Karplus, M.3
Kuntz, I.D.4
Weaver, D.L.5
-
35
-
-
0026244229
-
Molscript: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P.J. Molscript. a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24:1991;946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
36
-
-
0028057108
-
Raster3D version 2.0. A program for photorealistic molecular graphics
-
Merritt E.A., Murphy M.E.P. Raster3D version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr. D50:1994;869-873.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 869-873
-
-
Merritt, E.A.1
Murphy, M.E.P.2
|