Role of CH/π interactions in substrate binding by Escherichia coli β-galactosidase

Carbohydrate Research

Volumn 339, Issue 13, 2004, Pages 2275-2280

  Spiwok, Vojtěch ^a   Lipovová, Petra ^a   Skálová, Tereza ^b   Buchtelová, Eva ^b   Hašek, Jindřich ^b   Králová, Blanka ^a  

^a INSTITUTE OF CHEMICAL TECHNOLOGY   (Czech Republic)

^b INSTITUTE OF MACROMOLECULAR CHEMISTRY   (Czech Republic)

Author keywords

Galactosidase; Ab initio; Carbohydrate; CH interactions; Molecular recognition

Indexed keywords

AROMATIC RINGS; INTERACTION ENERGIES;

AMINO ACIDS; ENZYMES; ESCHERICHIA COLI; PROTEINS;

CARBOHYDRATES;

AROMATIC AMINO ACID; BACTERIAL ENZYME; BETA GALACTOSIDASE; CARBOHYDRATE; GALACTOSE; LACTOSE;

AB INITIO CALCULATION; AMINO ACID ANALYSIS; ARTICLE; BINDING KINETICS; CARBOHYDRATE ANALYSIS; COMPLEX FORMATION; ENERGY TRANSFER; ENZYME ACTIVITY; ESCHERICHIA COLI; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN PROCESSING; PROTEIN STABILITY; QUANTUM CHEMISTRY;

BETA-GALACTOSIDASE; BINDING SITES; CALORIMETRY; CARBON; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HEXOSES; HYDROGEN; SUBSTRATE SPECIFICITY; THERMODYNAMICS;

ESCHERICHIA COLI;

EID: 4444261821     PISSN: 00086215     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carres.2004.06.016     Document Type: Article

References (22)

1. M. Nishio, M. Hirota, and Y. Umezawa The CH/π Interaction - Evidence, Nature, and Consequences 1998 Wiley-VCH New York
2. G.R. Desiraju, and T. Steiner The Weak Hydrogen Bond in Structural Chemistry and Biology 1999 Oxford University Press Oxford
3. P. Hobza, and Z. Havlas Chem. Rev. 100 2000 4253 4264
4. P. Hobza, V. Spirko, Z. Havlas, K. Buchhold, B. Reimann, H.-D. Barth, and B. Brutschy Chem. Phys. Lett. 299 1999 180 186
5. P. Hobza, H.L. Selzle, and E.W. Schlag J. Am. Chem. Soc. 116 1994 3500 3506
6. S. Tsuzuki, T. Uchimaru, K. Matsumura, M. Mikami, and K. Tanabe Chem. Phys. Lett. 319 2000 547 554
7. S. Tsuzuki, K. Honda, T. Uchimaru, M. Mikami, and K. Tanabe J. Am. Chem. Soc. 122 2000 3746 3753
8. G. Karlstrom, P. Linse, A. Wallqvist, and B. Jonsson J. Am. Chem. Soc. 105 1983 3777 3782
9. O. Takahashi, Y. Kohno, S. Iwasaki, K. Saito, M. Iwaoka, S. Tomoda, Y. Umezawa, S. Tsuboyama, and M. Nishio Bull. Chem. Soc. Jpn. 74 2001 2421 2430
10. W.L. Jorgensen, and D.L. Severance J. Am. Chem. Soc. 112 1990 4114 4168
11. M. Brandl, M.S. Weiss, A. Jabs, J. Sühnel, and R. Hilgenfeld J. Mol. Biol. 307 2001 357 377
12. M. Muraki Protein Pept. Lett. 9 2002 195 209
13. D.M. Poole, G.P. Hazlewood, N.S. Huskisson, R. Virden, and H.J. Gilbert FEMS Microbiol. Lett. 106 1993 77 83
14. R.E. Huber, S. Hakda, C. Cheng, C.G. Cupples, and R.A. Edwards Biochemistry 42 2003 1796 1803
15. D.H. Juers, T.D. Heightman, A. Vasella, J.D. McCarter, and L. Mackenzie Biochemistry 40 2001 14781 14794
16. P. Karasova-Lipovova, H. Strnad, V. Spiwok, S. Mala, B. Kralova, and N.J. Russell Enzyme Microb. Technol. 33 2003 836 844
17. P. Hobza, and Sponer J. Chem. Rev. 99 1999 3247 3276
18. S. Tsuzuki, and H.P. Lüthi J. Chem. Phys. 14 2001 3949 3957
19. M.W. Schmidt, K.K. Baldridge, J.A. Boatz, S.T. Elbert, M.S. Gordon, J.H. Jensen, S. Koseki, N. Matsunaga, K.A. Nguyen, S. Su, T.L. Windus, M. Dupuis, and J.A. Montgomery J. Comput. Chem. 14 1993 1347 1363
20. S.F. Boys, and F. Bernardi Mol. Phys. (UK) 19 1970 553 566
21. N. Guex, and M.C. Peitsch Electrophoresis 18 1997 2714 2723
22. POV-Ray version 3.5, 2002, Persistence of Vision development team, Williamstown, Victoria, Australia