Anammox-Growth Physiology, Cell Biology, and Metabolism

Advances in Microbial Physiology

Volumn 60, Issue , 2012, Pages 211-262

  Kartal, Boran ^a   van Niftrik, Laura ^a   Keltjens, Jan T ^a   Op den Camp, Huub J M ^a   Jetten, Mike S M ^a,b  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

Ammonium oxidation; Anaerobic respiration; Anammox; Hydrazine; Ladderane lipids; Nitric oxide; Nitrogen cycle

Indexed keywords

AMMONIA; CARBON DIOXIDE; CYCLOBUTANE; CYCLOHEXANE; NIPRADILOL; NITRITE; NITROGEN; RNA 16S; TRANSCRIPTION ELONGATION FACTOR;

ANAMMOX BACTERIA; ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; CARBON DIOXIDE FIXATION; CELL CYCLE; CELL MEMBRANE; CELL VACUOLE; CYTOARCHITECTURE; CYTOLOGY; CYTOPLASM; ELECTRON; ENERGY CONSERVATION; ENZYME MEMBRANE BIOREACTOR; GENE SEQUENCE; LIPID MEMBRANE; NITROGEN METABOLISM; NONHUMAN; OXIDATION; PH; PROMOTER REGION; SIGNAL TRANSDUCTION; TRANSLATION INITIATION;

BACTERIA (MICROORGANISMS);

EID: 84861419659     PISSN: 00652911     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-398264-3.00003-6     Document Type: Chapter

References (160)

1. Abma W.R., Driessen W., Haarhuis R., van Loosdrecht M.C. Upgrading of sewage treatment plant by sustainable and cost-effective separate treatment of industrial wastewater. Water Sci. Technol. 2010, 61:1715-1722.
2. Arrigo K.R. Marine microorganisms and global nutrient cycles. Nature 2005, 437:349-355.
3. Atack J.M., Kelly D.J. Structure, mechanism and physiological roles of bacterial cytochrome c peroxidases. Adv. Microb. Physiol. 2007, 52:73-106.
4. Atkinson S.J., Mowat C.G., Reid G.A., Chapman S.K. An octaheme c-type cytochrome from Shewanella oneidensis can reduce nitrite and hydroxylamine. FEBS Lett. 2007, 581:3805-3808.
5. Baumann B., Snozzi M., Zehnder A.J., van der Meer J.R. Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes. J. Bacteriol. 1996, 178:4367-4374.
6. Baumann B., van der Meer J.R., Snozzi M., Zehnder A.J. Inhibition of denitrification activity but not of mRNA induction in Paracoccus denitrificans by nitrite at a suboptimal pH. Antonie Van Leeuwenhoek 1997, 72:183-189.
7. Betlach M.R., Tiedje J.M. Kinetic explanation for accumulation of nitrite, nitric oxide, and nitrous oxide during bacterial denitrification. Appl. Environ. Microbiol. 1981, 42:1074-1084.
8. Boumann H.A., Hopmans E.C., van de Leemput I., Op den Camp H.J.M., van de Vossenberg J., Strous M., Jetten M.S.M., Sinninghe Damsté J.S., Schouten S. Ladderane phospholipids in anammox bacteria comprise phosphocholine and phosphoethanolamine headgroups. FEMS Microbiol. Lett. 2006, 258:297-304.
9. Boumann H.A., Longo M.L., Stroeve P., Poolman B., Hopmans E.C., Stuart M.C., Sinninghe Damsté J.S., Schouten S. Biophysical properties of membrane lipids of anammox bacteria: I. Ladderane phospholipids form highly organized fluid membranes. Biochim. Biophys. Acta 2009, 1788:1444-1451.
10. Boumann H.A., Stroeve P., Longo M.L., Poolman B., Kuiper J.M., Hopmans E.C., Jetten M.S.M., Sinninghe Damsté J.S., Schouten S. Biophysical properties of membrane lipids of anammox bacteria: II. Impact of temperature and bacteriohopanoids. Biochim. Biophys. Acta 2009, 1788:1452-1457.
11. Broda E. Two kinds of lithotrophs missing in nature. Z. Allg. Mikrobiol. 1977, 17:491-493.
12. Canfield D.E., Stewart F.J., Thamdrup B., De Brabandere L., Dalsgaard T., DeLong E.F., Revsbech N.P., Ulloa O. A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science 2010, 330:1375-1378.
13. Cirpus I.E., Geerts W., Hermans J.H., Op den Camp H.J.M., Strous M., Kuenen J.G., Jetten M.S.M. Challenging protein purification from anammox bacteria. Int. J. Biol. Macromol. 2006, 39:88-94.
14. Crofts A.R. The cytochrome bc1 complex: function in the context of structure. Annu. Rev. Physiol. 2004, 66:689-733.
15. Crofts A.R., Lhee S., Crofts S.B., Cheng J., Rose S. Proton pumping in the bc1 complex: a new gating mechanism that prevents short circuits. Biochim. Biophys. Acta 2006, 1757:1019-1034.
16. Dalsgaard T., Thamdrup B., Canfield D.E. Anaerobic ammonium oxidation (anammox) in the marine environment. Res. Microbiol. 2005, 156:457-464.
17. Dang H., Chen R., Wang L., Guo L., Chen P., Tang Z., Tian F., Li S., Klotz M.G. Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China. Appl. Environ. Microbiol. 2010, 76:7036-7047.
18. de Almeida N.M., Maalcke W.J., Keltjens J.T., Jetten M.S.M., Kartal B. Proteins and protein complexes involved in the biochemical reactions of anaerobic ammonium-oxidizing bacteria. Biochem. Soc. Trans. 2011, 39:303-308.
19. + -translocating form of the bacterial F-type membrane ATPase. Bioinformatics 2010, 26:1473-1476.
20. Duce R.A., LaRoche J., Altieri K., Arrigo K.R., Baker A.R., Capone D.G., Cornell S., Dentener F., Galloway J., Ganeshram R.S., Geider R.J., Jickells T., et al. Impacts of atmospheric anthropogenic nitrogen on the open ocean. Science 2008, 320:893-897.
21. Egli K., Fanger U., Alvarez P.J., Siegrist H., van der Meer J.R., Zehnder A.J. Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate. Arch. Microbiol. 2001, 175:198-207.
22. Egli K., Bosshard F., Werlen C., Lais P., Siegrist H., Zehnder A.J., Van der Meer J.R. Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon. Microb. Ecol. 2003, 45:419-432.
23. Einsle O., Kroneck P.M. Structural basis of denitrification. Biol. Chem. 2004, 385:875-883.
24. Ettwig K.F., Butler M.K., Le Paslier D., Pelletier E., Mangenot S., Kuypers M.M.M., Schreiber F., Dutilh B.E., Zedelius J., de Beer D., Gloerich J., Wessels H.J.M., et al. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 2010, 464:543-548.
25. Francis C.A., Beman J.M., Kuypers M.M.M. New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J. 2007, 1:19-27.
26. Fuerst J.A. Intracellular compartmentation in planctomycetes. Annu. Rev. Microbiol. 2005, 59:299-328.
27. Fuerst J.A., Sagulenko E. Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function. Nat. Rev. Microbiol. 2011, 9:403-413.
28. Fuerst J.A., Webb R.I., Van Niftrik L., Jetten M.S.M., Strous M. Chapter 10: Anammoxosomes of anaerobic ammonium-oxidizing planctomycetes. Microbiology Monographs 2006, Vol. 2:259-608. Springer-Verlag, Berlin and Heidelberg, Germany. J.M. Shiveley (Ed.).
29. Galloway J.N., Townsend A.R., Erisman J.W., Bekunda M., Cai Z., Freney J.R., Martinelli L.A., Seitzinger S.P., Sutton M.A. Transformation of the nitrogen cycle: recent trends, questions, and potential solutions. Science 2008, 320:889-892.
30. Goehring N.W., Beckwith J. Diverse paths to midcell: assembly of the bacterial cell division machinery. Curr. Biol. 2005, 15:R514-R526.
31. Goehring N.W., Gonzalez M.D., Beckwith J. Premature targeting of cell division proteins to midcell reveals hierarchies of protein interactions involved in divisome assembly. Mol. Microbiol. 2006, 61:33-45.
32. González P.J., Correia C., Moura I., Brondino C.D., Moura J.J. Bacterial nitrate reductases: molecular and biological aspects of nitrate reduction. J. Inorg. Biochem. 2006, 100:1015-1023.
33. Gori F., Tringe S.G., Kartal B., Machiori E., Jetten M.S.M. The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'. Biochem. Soc. Trans. 2011, 39:1799-1804.
34. Griffin B.M., Schott J., Schink B. Nitrite, an electron donor for anoxygenic photosynthesis. Science 2007, 316:1870.
35. Güven D., Dapena A., Kartal B., Schmid M.C., Maas B., van de Pas-Schoonen K., Sozen S., Mendez R., Op den Camp H.J.M., Jetten M.S.M., Strous M., Schmidt I. Propionate oxidation by and methanol inhibition of anaerobic ammonium-oxidizing bacteria. Appl. Environ. Microbiol. 2005, 71:1066-1071.
36. Haines T.H. Do sterols reduce proton and sodium leaks through lipid bilayers?. Prog. Lipid Res. 2001, 40:299-324.
37. Hamersley M.R., Woebken D., Boehrer B., Schultze M., Lavik G., Kuypers M.M.M. Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany). Syst. Appl. Microbiol. 2009, 32:571-582.
38. Hamm R.E., Thompson T.G. Dissolved nitrogen in the sea water of the northeast Pacific with notes on the total carbon dioxide and the dissolved oxygen. J. Mar. Res. 1941, 4:11-27.
39. Hong Y.G., Li M., Cao H., Gu J.D. Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters. Microb. Ecol. 2011, 62:36-47.
40. Hong Y.G., Yin B., Zheng T.L. Diversity and abundance of anammox bacterial community in the deep-ocean surface sediment from equatorial Pacific. Appl. Microbiol. Biotechnol. 2011, 89:1233-1241.
41. Hooper A.B., Vannelli T., Bergmann D.J., Arciero D.M. Enzymology of the oxidation of ammonia to nitrite by bacteria. Antonie Van Leeuwenhoek 1997, 71:59-67.
42. Hu B.L., Zheng P., Tang C.J., Chen J.W., van der Biezen E., Zhang L., Ni B.J., Jetten M.S.M., Yan J., Yu H.Q., Kartal B. Identification and quantification of anammox bacteria in eight nitrogen removal reactors. Water Res. 2010, 44:5014-5020.
43. Hu B.L., Rush D., van der Biezen E., Zheng P., van Mullekom M., Schouten S., Sinninghe Damsté J.S., Smolders A.J., Jetten M.S., Kartal B. New anaerobic, ammonium-oxidizing community enriched from peat soil. Appl. Environ. Microbiol. 2011, 77:966-971.
44. Humbert S., Tarnawski S., Fromin N., Mallet M.P., Aragno M., Zopfi J. Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity. ISME J. 2010, 4:450-454.
45. Imajo U., Tokutomi T., Furukawa K. Granulation of Anammox microorganisms in up-flow reactors. Water Sci. Technol. 2004, 49:155-163.
46. Jaeschke A., Hopmans E.C., Wakeham S.G., Schouten S., Sinninghe Damsté J.S. The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox. Limnol. Oceanogr. 2007, 52:780-786.
47. Jaeschke A., Op den Camp H.J., Harhangi H., Klimiuk A., Hopmans E.C., Jetten M.S., Schouten S., Sinninghe Damsté J.S. 16S rRNA gene and lipid biomarker evidence for anaerobic ammonium-oxidizing bacteria (anammox) in California and Nevada hot springs. FEMS Microbiol. Ecol. 2009, 67:343-350.
48. Jaeschke A., Abbas B., Zabel M., Hopmans E.C., Schouten S., Sinninghe Damsté J.S. Molecular evidence for anaerobic ammonium-oxidizing (anammox) bacteria in continental shelf and slope sediments off northwest Africa. Limnol. Oceanogr. 2010, 55:365-376.
49. Jensen M.M., Lam P., Revsbech N.P., Nagel B., Gaye B., Jetten M.S., Kuypers M.M.M. Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium. ISME J. 2011, 5:1660-1670.
50. Jetten M.S.M., Logemann S., Muyzer G., Robertson L.A., de Vries S., van Loosdrecht M.C., Kuenen J.G. Novel principles in the microbial conversion of nitrogen compounds. Antonie Van Leeuwenhoek 1997, 71:75-93.
51. Jetten M.S.M., Sliekers O., Kuypers M., Dalsgaard T., van Niftrik L., Cirpus I., van de Pas-Schoonen K., Lavik G., Thamdrup B., Le Paslier D., Op den Camp H.J.M., Hulth S., et al. Anaerobic ammonium oxidation by marine and freshwater planctomycete-like bacteria. Appl. Microbiol. Biotechnol. 2003, 63:107-114.
52. Jetten M.S.M., Cirpus I., Kartal B., van Niftrik L., van de Pas-Schoonen K.T., Sliekers O., Haaijer S., van der Star W., Schmid M., van de Vossenberg J., Schmidt I., Harhangi H., et al. 1994-2004: 10 years of research on the anaerobic oxidation of ammonium. Biochem. Soc. Trans. 2005, 33:119-123.
53. Jetten M.S.M., Niftrik L., Strous M., Kartal B., Keltjens J.T., Op den Camp H.J.M. Biochemistry and molecular biology of anammox bacteria. Crit. Rev. Biochem. Mol. Biol. 2009, 44:65-84.
54. Jetten M.S.M., Op den Camp H.J.M., Kuenen J.G., Strous M. Description of the order Brocadiales. Bergey's Manual of Systematic Bacteriology 2010, Vol 4:596-603. Springer, Heidelberg, Germany. N.R. Krieg, W. Ludwig, W.B. Whitman, B.P. Hedlund, B.J. Paster, J.T. Staley, N. Ward, D. Brown, A. Parte (Eds.).
55. Kampschreur M.J., van der Star W.R., Wielders H.A., Mulder J.W., Jetten M.S.M., van Loosdrecht M.C. Dynamics of nitric oxide and nitrous oxide emission during full-scale reject water treatment. Water Res. 2008, 42:812-826.
56. Kampschreur M.J., Poldermans R., Kleerebezem R., van der Star W.R., Haarhuis R., Abma W.R., Jetten M.S.M., van Loosdrecht M.C. Emission of nitrous oxide and nitric oxide from a full-scale single-stage nitritation-anammox reactor. Water Sci. Technol. 2009, 60:3211-3217.
57. Karlsson R., Karlsson A., Bäckman O., Johansson B.R., Hulth S. Identification of key proteins involved in the anammox reaction. FEMS Microbiol. Lett. 2009, 297:87-94.
58. Karner M.B., DeLong E.F., Karl D.M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 2001, 409:507-510.
59. Kartal B., Rattray J., van Niftrik L.A., van de Vossenberg J., Schmid M.C., Webb R.I., Schouten S., Fuerst J.A., Sinninghe Damsté J.S., Jetten M.S.M., Strous M. Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Syst. Appl. Microbiol. 2007, 30:39-49.
60. Kartal B., Kuypers M.M.M., Lavik G., Schalk J., Op den Camp H.J.M., Jetten M.S.M., Strous M. Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium. Environ. Microbiol. 2007, 9:635-642.
61. Kartal B., van Niftrik L., Rattray J., van de Vossenberg J.L., Schmid M.C., Sinninghe Damsté J., Jetten M.S.M., Strous M. Candidatus 'Brocadia fulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. FEMS Microbiol. Ecol. 2008, 63:46-55.
62. Kartal B., Kuenen J.G., van Loosdrecht M.C. Engineering. Sewage treatment with anammox. Science 2010, 328:702-703.
63. Kartal B., Tan N.C., Van der Biezen E., Kampschreur M.J., Van Loosdrecht M.C., Jetten M.S.M. Effect of nitric oxide on anammox bacteria. Appl. Environ. Microbiol. 2010, 76:6304-6306.
64. Kartal B., Geerts W., Jetten M.S. Cultivation, detection, and ecophysiology of anaerobic ammonium-oxidizing bacteria. Methods Enzymol. 2011, 486:89-108.
65. Kartal B., Maalcke W.J., de Almeida N.M., Cirpus I., Gloerich J., Geerts W., Op den Camp H.J.M., Harhangi H.R., Janssen-Megens E.M., Francoijs K.J., Stunnenberg H.G., Keltjens J.T., et al. Molecular mechanism of anaerobic ammonium oxidation. Nature 2011, 479:127-130.
66. Kawagoshi Y., Nakamura Y., Kawashima H., Fujisaki K., Fujimoto A., Furukawa K. Enrichment culture of marine anaerobic ammonium oxidation (anammox) bacteria from sediment of sea-based waste disposal site. J. Biosci. Bioeng. 2009, 107:61-63.
67. Kawagoshi Y., Nakamura Y., Kawashima H., Fujisaki K., Furukawa K., Fujimoto A. Enrichment of marine anammox bacteria from seawater-related samples and bacterial community study. Water Sci. Technol. 2010, 61:119-126.
68. Kern M., Simon J. Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria. Biochim. Biophys. Acta 2009, 1787:646-656.
69. Kindaichi T., Tsushima I., Ogasawara Y., Shimokawa M., Ozaki N., Satoh H., Okabe S. In situ activity and spatial organization of anaerobic ammonium-oxidizing (anammox) bacteria in biofilms. Appl. Environ. Microbiol. 2007, 73:4931-4939.
70. Kindaichi T., Awata T., Suzuki Y., Tanabe K., Hatamoto M., Ozaki N., Ohashi A. Enrichment using an up-flow column reactor and community structure of marine anammox bacteria from coastal sediment. Microbes Environ. 2011, 26:67-73.
71. Kindaichi T., Awata T., Tanabe K., Ozaki N., Ohashi A. Enrichment of marine anammox bacteria in Hiroshima Bay sediments. Water Sci. Technol. 2011, 63:964-969.
72. Klotz M.G., Schmid M.C., Strous M., Op den Camp H.J.M., Jetten M.S.M., Hooper A.B. Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria. Environ. Microbiol. 2008, 10:3150-3163.
73. Kuenen J.G. Anammox bacteria: from discovery to application. Nat. Rev. Microbiol. 2008, 6:320-326.
74. Kuypers M.M.M., Sliekers A.O., Lavik G., Schmid M., Jørgensen B.B., Kuenen J.G., Sinninghe Damsté J.S., Strous M., Jetten M.S. Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 2003, 422:608-611.
75. Kuypers M.M.M., Lavik G., Woebken D., Schmid M., Fuchs B.M., Amann R., Jørgensen B.B., Jetten M.S.M. Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. Proc. Natl. Acad. Sci. USA 2005, 102:6478-6483.
76. Lam P., Kuypers M.M.M. Microbial nitrogen cycling processes in oxygen minimum zones. Ann. Rev. Mar. Sci. 2011, 3:317-345.
77. Lam P., Jensen M.M., Lavik G., McGinnis D.F., Müller B., Schubert C.J., Amann R., Thamdrup B., Kuypers M.M.M. Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc. Natl. Acad. Sci. USA 2007, 104:7104-7109.
78. Lam P., Lavik G., Jensen M.M., van de Vossenberg J., Schmid M., Woebken D., Gutiérrez D., Amann R., Jetten M.S.M., Kuypers M.M.M. Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc. Natl. Acad. Sci. USA 2009, 106:4752-4757.
79. Li M., Cao H., Hong Y., Gu J.D. Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments. Appl. Microbiol. Biotechnol. 2011, 89:1243-1254.
80. Lindsay M.R., Webb R.I., Strous M., Jetten M.S.M., Butler M.K., Forde R.J., Fuerst J.A. Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell. Arch. Microbiol. 2001, 175:413-429.
81. Martens-Habbena W., Berube P.M., Urakawa H., de la Torre J.R., Stahl D.A. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 2009, 461:976-979.
82. Mehta M.P., Baross J.A. Nitrogen fixation at 92 degrees C by a hydrothermal vent archaeon. Science 2006, 314:1783-1786.
83. Mohan S.B., Schmid M., Jetten M., Cole J. Detection and widespread distribution of the nrfA gene encoding nitrite reduction to ammonia, a short circuit in the biological nitrogen cycle that competes with denitrification. FEMS Microbiol. Ecol. 2004, 49:433-443.
84. Moura J.J., Brondino C.D., Trincão J., Romão M.J. Mo and W bis-MGD enzymes: nitrate reductases and formate dehydrogenases. J. Biol. Inorg. Chem. 2004, 9:791-799.
85. Mulder A., Van de Graaf A.A., Robertson L.A., Kuenen J.G. Anaerobic ammonium oxidation discovered in a fluidized-bed reactor. FEMS Microbiol. Ecol. 1995, 16:177-183.
86. Mulkidjanian A.Y. Activated Q-cycle as a common mechanism for cytochrome bc1 and cytochrome b6f complexes. Biochim. Biophys. Acta 2010, 1797:1858-1868.
87. Musat F., Wilkes H., Behrends A., Woebken D., Widdel F. Microbial nitrate-dependent cyclohexane degradation coupled with anaerobic ammonium oxidation. ISME J. 2010, 4:1290-1301.
88. Neumann S., Jetten M.S.M., van Niftrik L. The ultrastructure of the compartmentalized anaerobic ammonium-oxidizing bacteria is linked to their energy metabolism. Biochem. Soc. Trans. 2011, 39:1805-1810.
89. Ni B.J., Hu B.L., Fang F., Xie W.M., Kartal B., Liu X.W., Sheng G.P., Jetten M., Zheng P., Yu H.Q. Microbial and physicochemical characteristics of compact anaerobic ammonium-oxidizing granules in an upflow anaerobic sludge blanket reactor. Appl. Environ. Microbiol. 2010, 76:2652-2656.
90. Nielsen M., Bollmann A., Sliekers O., Jetten M., Schmid M., Strous M., Schmidt I., Larsen L.H., Nielsen L.P., Revsbech N.P. Kinetics, diffusional limitation and microscale distribution of chemistry and organisms in a CANON reactor. FEMS Microbiol. Ecol. 2005, 51:247-256.
91. Op den Camp H.J.M., Kartal B., Güven D., van Niftrik L.A., Haaijer S.C., van der Star W.R., van de Pas-Schoonen K.T., Cabezas A., Ying Z., Schmid M.C., Kuypers M.M.M., van de Vossenberg J., et al. Global impact and application of the anaerobic ammonium-oxidizing (anammox) bacteria. Biochem. Soc. Trans. 2006, 34:174-178.
92. Oshiki M., Shimokawa M., Fujii N., Satoh H., Okabe S. Physiological characteristics of the anaerobic ammonium-oxidizing bacterium 'Candidatus Brocadia sinica'. Microbiology 2011, 157:1706-1713.
93. Osyczka A., Moser C.C., Dutton P.L. Fixing the Q cycle. Trends Biochem. Sci. 2005, 30:176-182.
94. Otte S., Grobben N.G., Robertson L.A., Jetten M.S.M., Kuenen J.G. Nitrous oxide production by Alcaligenes faecalis under transient and dynamic aerobic and anaerobic conditions. Appl. Environ. Microbiol. 1996, 62:2421-2426.
95. Penton C.R., Devol A.H., Tiedje J.M. Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Appl. Environ. Microbiol. 2006, 72:6829-6832.
96. Pilhofer M., Rappl K., Eckl C., Bauer A.P., Ludwig W., Schleifer K.H., Petroni G. Characterization and evolution of cell division and cell wall synthesis genes in the bacterial phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and phylogenetic comparison with rRNA genes. J. Bacteriol. 2008, 190:3192-3202.
97. Polyakov K.M., Boyko K.M., Tikhonova T.V., Slutsky A., Antipov A.N., Zvyagilskaya R.A., Popov A.N., Bourenkov G.P., Lamzin V.S., Popov V.O. High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens. J. Mol. Biol. 2009, 389:846-862.
98. Poulos T.L. Thirty years of heme peroxidase structural biology. Arch. Biochem. Biophys. 2010, 500:3-12.
99. Quan Z.X., Rhee S.K., Zuo J.E., Yang Y., Bae J.W., Park J.R., Lee S.T., Park Y.H. Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. Environ. Microbiol. 2008, 10:3130-3139.
100. Rachel R. Another way to divide: the case of anammox bacteria. Mol. Microbiol. 2009, 73:978-981.
101. Raghoebarsing A.A., Pol A., van de Pas-Schoonen K.T., Smolders A.J., Ettwig K.F., Rijpstra W.I., Schouten S., Damsté J.S., Op den Camp H.J.M., Jetten M.S.M., Strous M. A microbial consortium couples anaerobic methane oxidation to denitrification. Nature 2006, 440:918-921.
102. Rattray J.E., van de Vossenberg J., Hopmans E.C., Kartal B., van Niftrik L., Rijpstra W.I., Strous M., Jetten M.S.M., Schouten S., Sinninghe Damsté J.S. Ladderane lipid distribution in four genera of anammox bacteria. Arch. Microbiol. 2008, 190:51-66.
103. Rattray J.E., van de Vossenberg J., Jaeschke A., Hopmans E.C., Wakeham S.G., Lavik G., Kuypers M.M.M., Strous M., Jetten M.S.M., Schouten S., Sinninghe Damsté J.S. Impact of temperature on ladderane lipid distribution in anammox bacteria. Appl. Environ. Microbiol. 2010, 76:1596-1603.
104. Richards F.A. Chemical observations in some anoxic, sulfide-bearing basins and fjords. Advances in Water Pollution Research 1965, Vol. 3:215-232. Pergamon Press Inc, London, United Kingdom. E.A. Pearson (Ed.).
105. Risgaard-Petersen N., Langezaal A.M., Ingvardsen S., Schmid M.C., Jetten M.S.M., Op den Camp H.J.M., Derksen J.W., Piña-Ochoa E., Eriksson S.P., Nielsen L.P., Revsbech N.P., Cedhagen T., et al. Evidence for complete denitrification in a benthic foraminifer. Nature 2006, 443:93-96.
106. Saleh-Lakha S., Shannon K.E., Henderson S.L., Goyer C., Trevors J.T., Zebarth B.J., Burton D.L. Effect of pH and temperature on denitrification gene expression and activity in Pseudomonas mandelii. Appl. Environ. Microbiol. 2009, 75:3903-3911.
107. Sànchez-Melsió A., Cáliz J., Balaguer M.D., Colprim J., Vila X. Development of batch-culture enrichment coupled to molecular detection for screening of natural and man-made environments in search of anammox bacteria for N-removal bioreactors systems. Chemosphere 2009, 75:169-179.
108. Schalk J., Oustad H., Kuenen J.G., Jetten M.S.M. The anaerobic oxidation of hydrazine: a novel reaction in microbial nitrogen metabolism. FEMS Microbiol. Lett. 1998, 158:61-67.
109. Schalk J., de Vries S., Kuenen J.G., Jetten M.S.M. Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation. Biochemistry 2000, 39:5405-5412.
110. Schleper C., Nicol G.W. Ammonia-oxidising archaea-physiology, ecology and evolution. Adv. Microb. Physiol. 2010, 57:1-41.
111. Schmid M., Walsh K., Webb R., Rijpstra W.I., van de Pas-Schoonen K., Verbruggen M.J., Hill T., Moffett B., Fuerst J., Schouten S., Sinninghe Damsté J.S., Harris J., et al. Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria. Syst. Appl. Microbiol. 2003, 26:529-538.
112. Schmid M.C., Maas B., Dapena A., van de Pas-Schoonen K., van de Vossenberg J., Kartal B., van Niftrik L., Schmidt I., Cirpus I., Kuenen J.G., Wagner M., Sinninghe Damsté J.S., et al. Biomarkers for in situ detection of anaerobic ammonium-oxidizing (anammox) bacteria. Appl. Environ. Microbiol. 2005, 71:1677-1684.
113. Schmid M.C., Risgaard-Petersen N., van de Vossenberg J., Kuypers M.M.M., Lavik G., Petersen J., Hulth S., Thamdrup B., Canfield D., Dalsgaard T., Rysgaard S., Sejr M.K., et al. Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity. Environ. Microbiol. 2007, 9:1476-1484.
114. Schmid M.C., Hooper A.B., Klotz M.G., Woebken D., Lam P., Kuypers M.M., Pommerening-Roeser A., Op den Camp H.J.M., Jetten M.S.M. Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria. Environ. Microbiol. 2008, 10:3140-3149.
115. Schmidt I. Nitric oxide: interaction with the ammonia monooxygenase and regulation of metabolic activities in ammonia oxidizers. Methods Enzymol. 2008, 440:121-135.
116. Schmidt I., Sliekers O., Schmid M., Cirpus I., Strous M., Bock E., Kuenen J.G., Jetten M.S.M. Aerobic and anaerobic ammonia oxidizing bacteria-competitors or natural partners?. FEMS Microbiol. Ecol. 2002, 39:175-181.
117. Schmidt I., Sliekers O., Schmid M., Bock E., Fuerst J., Kuenen J.G., Jetten M.S.M., Strous M. New concepts of microbial treatment processes for the nitrogen removal in wastewater. FEMS Microbiol. Rev. 2003, 27:481-492.
118. Schmidt I., Look C., Bock E., Jetten M.S.M. Ammonium and hydroxylamine uptake and accumulation in Nitrosomonas. Microbiology 2004, 150:1405-1412.
119. Schmidt J.E., Batstone D.J., Angelidaki I. Improved nitrogen removal in upflow anaerobic sludge blanket (UASB) reactors by incorporation of Anammox bacteria into the granular sludge. Water Sci. Technol. 2004, 49:69-76.
120. Schouten S., Strous M., Kuypers M.M.M., Rijpstra W.I., Baas M., Schubert C.J., Jetten M.S.M., Sinninghe Damsté J.S. Stable carbon isotopic fractionations associated with inorganic carbon fixation by anaerobic ammonium-oxidizing bacteria. Appl. Environ. Microbiol. 2004, 70:3785-3788.
121. Schubert C.J., Durisch-Kaiser E., Wehrli B., Thamdrup B., Lam P., Kuypers M.M.M. Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika). Environ. Microbiol. 2006, 8:1857-1863.
122. Shi L., Squier T.C., Zachara J.M., Fredrickson J.K. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol. Microbiol. 2007, 65:12-20.
123. Shimamura M., Nishiyama T., Shigetomo H., Toyomoto T., Kawahara Y., Furukawa K., Fujii T. Isolation of a multiheme protein with features of a hydrazine-oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture. Appl. Environ. Microbiol. 2007, 73:1065-1072.
124. Shimamura M., Nishiyama T., Shinya K., Kawahara Y., Furukawa K., Fujii T. Another multiheme protein, hydroxylamine oxidoreductase, abundantly produced in an anammox bacterium besides the hydrazine-oxidizing enzyme. J. Biosci. Bioeng. 2008, 105:243-248.
125. Siegrist H., Salzgeber D., Eugster J., Joss A. Anammox brings WWTP closer to energy autarky due to increased biogas production and reduced aeration energy for N-removal. Water Sci. Technol. 2008, 57:383-388.
126. Simon J. Enzymology and bioenergetics of respiratory nitrite ammonification. FEMS Microbiol. Rev. 2002, 26:285-309.
127. Sinninghe Damsté J.S., Strous M., Rijpstra W.I., Hopmans E.C., Geenevasen J.A., van Duin A.C., van Niftrik L.A., Jetten M.S.M. Linearly concatenated cyclobutane lipids form a dense bacterial membrane. Nature 2002, 419:708-712.
128. Sinninghe Damsté J.S., Rijpstra W.I., Geenevasen J.A., Strous M., Jetten M.S.M. Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox). FEBS J. 2005, 272:4270-4283.
129. Sliekers A.O., Derwort N., Gomez J.L., Strous M., Kuenen J.G., Jetten M.S.M. Completely autotrophic nitrogen removal over nitrite in one single reactor. Water Res. 2002, 36:2475-2482.
130. Smith C.J., Nedwell D.B., Dong L.F., Osborn A.M. Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Appl. Environ. Microbiol. 2007, 73:3612-3622.
131. Stramma L., Prince E.D., Schmidtko S., Luo J., Hoolihan J.P., Visbeck M., Wallace D.W.R., Brandt P., Körtzinger A. Expansion of oxygen minimum zones may reduce available habitat for tropical pelagic fishes. Nat. Clim. 2012, 2:33-37.
132. Strohm T.O., Griffin B., Zumft W.G., Schink B. Growth yields in bacterial denitrification and nitrate ammonification. Appl. Environ. Microbiol. 2007, 73:1420-1424.
133. Strous M., Van Gerven E., Kuenen J.G., Jetten M. Effects of aerobic and microaerobic conditions on anaerobic ammonium-oxidizing (anammox) sludge. Appl. Environ. Microbiol. 1997, 63:2446-2448.
134. Strous M., Heijnen J.J., Kuenen J.G., Jetten M.S.M. The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms. Appl. Microbiol. Biotechnol. 1998, 50:589-596.
135. Strous M., Fuerst J.A., Kramer E.H., Logemann S., Muyzer G., van de Pas-Schoonen K.T., Webb R., Kuenen J.G., Jetten M.S.M. Missing lithotroph identified as new planctomycete. Nature 1999, 400:446-449.
136. Strous M., Kuenen J.G., Jetten M.S.M. Key physiology of anaerobic ammonium oxidation. Appl. Environ. Microbiol. 1999, 65:3248-3250.
137. Strous M., Pelletier E., Mangenot S., Rattei T., Lehner A., Taylor M.W., Horn M., Daims H., Bartol-Mavel D., Wincker P., Barbe V., Fonknechten N., et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 2006, 440:790-794.
138. Suneethi S., Joseph K. Batch culture enrichment of ANAMMOX populations from anaerobic and aerobic seed cultures. Bioresour. Technol. 2011, 102:585-591.
139. Thamdrup B., Dalsgaard T., Jensen M.M., Petersen J. Anammox and the marine N cycle. Geochim. Cosmochim. Acta 2004, 68:A325.
140. Tsushima I., Ogasawara Y., Kindaichi T., Satoh H., Okabe S. Development of high-rate anaerobic ammonium-oxidizing (anammox) biofilm reactors. Water Res. 2007, 41:1623-1634.
141. Tsushima I., Ogasawara Y., Shimokawa M., Kindaichi T., Okabe S. Development of a super high-rate Anammox reactor and in situ analysis of biofilm structure and function. Water Sci. Technol. 2007, 55:9-17.
142. van de Graaf A.A., Mulder A., de Bruijn P., Jetten M.S.M., Robertson L.A., Kuenen J.G. Anaerobic oxidation of ammonium is a biologically mediated process. Appl. Environ. Microbiol. 1995, 61:1246-1251.
143. van de Graaf A.A., de Bruijn P., Robertson L.A., Jetten M.S.M., Kuenen J.G. Autotrophic growth of anaerobic ammonium-oxidizing micro-organisms in a fluidized bed reactor. Microbiology 1996, 142:2187-2196.
144. van de Graaf A.A., de Bruijn P., Robertson L.A., Jetten M.S.M., Kuenen J.G. Metabolic pathway of anaerobic ammonium oxidation on basis of N-15 studies in a fluidized bed reactor. Microbiology 1997, 143:2415-2421.
145. + permeability at high salt concentration. Extremophiles 1999, 3:253-257.
146. van de Vossenberg J., Rattray J.E., Geerts W., Kartal B., van Niftrik L., van Donselaar E.G., Sinninghe Damsté J.S., Strous M., Jetten M.S.M. Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production. Environ. Microbiol. 2008, 10:3120-3129.
147. van der Star W.R., Miclea A.I., van Dongen U.G., Muyzer G., Picioreanu C., van Loosdrecht M.C. The membrane bioreactor: a novel tool to grow anammox bacteria as free cells. Biotechnol. Bioeng. 2008, 101:286-294.
148. van der Star W.R., van de Graaf M.J., Kartal B., Picioreanu C., Jetten M.S.M., van Loosdrecht M.C. Response of anaerobic ammonium-oxidizing bacteria to hydroxylamine. Appl. Environ. Microbiol. 2008, 74:4417-4426.
149. Van Niftrik L.A., Fuerst J.A., Sinninghe Damsté J.S., Kuenen J.G., Jetten M.S.M., Strous M. The anammoxosome: an intracytoplasmic compartment in anammox bacteria. FEMS Microbiol. Lett. 2004, 233:7-13.
150. Van Niftrik L., Geerts W.J., van Donselaar E.G., Humbel B.M., Webb R.I., Fuerst J.A., Verkleij A.J., Jetten M.S.M., Strous M. Linking ultrastructure and function in four genera of anaerobic ammonium-oxidizing bacteria: cell plan, glycogen storage, and localization of cytochrome C proteins. J. Bacteriol. 2008, 190:708-717.
151. Van Niftrik L., Geerts W.J., van Donselaar E.G., Humbel B.M., Yakushevska A., Verkleij A.J., Jetten M.S.M., Strous M. Combined structural and chemical analysis of the anammoxosome: a membrane-bounded intracytoplasmic compartment in anammox bacteria. J. Struct. Biol. 2008, 161:401-410.
152. van Niftrik L., van Helden M., Kirchen S., van Donselaar E.G., Harhangi H.R., Webb R.I., Fuerst J.A., Op den Camp H.J.M., Jetten M.S.M., Strous M. Intracellular localization of membrane-bound ATPases in the compartmentalized anammox bacterium 'Candidatus Kuenenia stuttgartiensis'. Mol. Microbiol. 2010, 77:701-715.
153. Vicente M., Rico A.I. The order of the ring: assembly of Escherichia coli cell division components. Mol. Microbiol. 2006, 61:5-8.
154. Wagner M., Horn M. The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. Curr. Opin. Biotechnol. 2006, 17:241-249.
155. Wilmot C.M., Davidson V.L. Uncovering novel biochemistry in the mechanism of tryptophan tryptophylquinone cofactor biosynthesis. Curr. Opin. Chem. Biol. 2009, 13:469-474.
156. Windey K., De Bo I., Verstraete W. Oxygen-limited autotrophic nitrification-denitrification (OLAND) in a rotating biological contactor treating high-salinity wastewater. Water Res. 2005, 39:4512-4520.
157. Woebken D., Fuchs B.M., Kuypers M.M.M., Amann R. Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl. Environ. Microbiol. 2007, 73:4648-4657.
158. Woebken D., Lam P., Kuypers M.M.M., Naqvi S.W., Kartal B., Strous M., Jetten M.S.M., Fuchs B.M., Amann R. A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ. Microbiol. 2008, 10:3106-3119.
159. Yasuda T., Waki M., Yoshinaga I., Amano T., Suzuki K., Tanaka Y., Yamagishi T., Suwa Y. Evidence of exponential growth of an anammox population in an anaerobic batch culture. Microbes Environ. 2011, 26:266-269.
160. Yu R., Chandran K. Strategies of Nitrosomonas europaea 19718 to counter low dissolved oxygen and high nitrite concentrations. BMC Microbiol. 2010, 10:70.