Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., Two New Species of Anaerobic Ammonium Oxidizing Bacteria

Systematic and Applied Microbiology

Volumn 26, Issue 4, 2003, Pages 529-538

  Schmid, Markus ^a   Walsh, Kerry ^b   Webb, Rick ^c   Rijpstra, W Irene C ^d   Van De Pas Schoonen, Katinka ^e   Verbruggen, Mark Jan ^e   Hill, Thomas ^b   Moffett, Bruce ^b   Fuerst, John ^c   Schouten, Stefan ^d   Damsté, Jaap S Sinninghe ^d   Harris, James ^f   Shaw, Phil ^f   Jetten, Mike ^e   Strous, Marc ^e  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^b UNIVERSITY OF EAST LONDON   (United Kingdom)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^e RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^f CRANFIELD UNIVERSITY   (United Kingdom)

Author keywords

16S rRNA approach; Ammonium; Nitrate; Nitrite

Indexed keywords

AMMONIA; HYDRAZINE; HYDROXYLAMINE; RIBOSOME RNA;

ANAEROBIC BACTERIUM; ANAEROBIC METABOLISM; ARTICLE; BIOMASS; ELECTRON MICROSCOPY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE SEQUENCE; LANDFILL; LIPID ANALYSIS; MOLECULAR CLONING; NITROGEN CYCLE; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; OXIDATION; PRIORITY JOURNAL; SCALINDUA BRODAE; SCALINDUA WAGNERI; WASTE WATER MANAGEMENT;

BACTERIA (MICROORGANISMS); CANDIDATUS SCALINDUA; CANDIDATUS SCALINDUA BRODAE; CANDIDATUS SCALINDUA WAGNERI; PLANCTOMYCETALES; PLANCTOMYCETES; SCALINDUA BRODAE; SCALINDUA SOROKINII; SCALINDUA WAGNERI;

EID: 10744230197     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/072320203770865837     Document Type: Article

References (32)

1. Alm, E. W., Oerther, D. B., Larsen, N., Stahl, D. A., Raskin, L.: The oligonucleotide probe database. Appl. Environ. Microbiol. 62, 3557-3559 (1996).
2. Amann, R. I., Binder, B. J., Olsen, R. J., Chisholm, S. W., Devereux, R., and Stahl, D. A.: Combination of 16S rRNA targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 1919-1925 (1990).
3. Brochier, C., Philippe, H.: A non-hyperthermophilic ancestor for bacteria. Nature 417, 244 (2002).
4. Broda, E.: Two kinds of lithotrophs missing in nature. Z. Allg. Mikrobiol. 17, 491-493 (1977).
5. Brosius, J., Palmer, M. L., Kennedy, P. J., and Noller, H. F.: Complete sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA. 75, 4801-4805 (1978).
6. Daims, H., Bruehl, A., Amann, R., Schleifer, K. H., Wagner, M.: The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22, 434-444 (1999).
7. Egli, K., Fanger, U., Alvarez, P. J. J., Siegrist, H., Van der Meer, J. R., Zehnder, A. J. B.: Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate. Arch. Microbiol. 175[3], 198-207 (2001).
8. Helmer-Madhok, C., Schmid, M., Filipov, E., Gaul, A. Hippen, T., Rosenwinkel, K. H., Seyfried, C. F., Wagner, M., Kunst, S.: Deammonification in biofilm systems: population structure and function. Water Sci. Technol. 46, 223-231 (2002).
9. Imajo, U., Ishida, H., Fujii, T., Sugino, H., Rouse, J. D., Furukawa, K.: Genbank direct submission. Accession numbers: AB054006 (uncultured anoxic sludge bacterium KU1), AB054007 (uncultured anoxic sludge bacterium KU2) (2001).
10. Jetten, M. S. M., Wagner, M., Fuerst, J. A., Van Loosdrecht, M. C. M., Kuenen, J. G. Strous, M.: Microbiology and application of the anaerobic ammonium oxidation ('anammox') process. Curr. Opin. Biotechnol. 12[3], 283-288 (2001).
11. Juretschko, S., Timmermann, G., Schmid, M., Schleifer, K. H., Pommerening-Roser, A., Koops, H. P., Wagner, M.: Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge - Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl. Environ. Microbiol. 64, 3042-3051 (1998).
12. Kuypers M. M. M., Sliekers A. O., Lavik G., Schmid M., Jorgensen B. B., Kuenen J. G., Sinninghe Damsté J. S., Strous M., Jetten M. S. M.: Anaerobic ammonium oxidation by Anammox bacteria in the Black Sea. Nature 422, 608-611 (2003).
13. Li, L., Kato, C., Horikoshi, K.: Bacterial diversity in deepsea sediments from different depths. Biodivers. Conserv. 8, 659-677 (1999).
14. Lindsay, M. R., Webb, R. I., Strous, M., Jetten, M. S. M., Butler, M. K., Forde, R. J., Fuerst, J. A.: Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell. Arch. Microbiol. 175[6], 413-429 (2001).
15. Loy, A., Horn, M., Wagner, M.: probeBase - an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res. 31, 514-516 (2003)
16. Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M., Schleifer, K. H.: Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19, 554-568 (1998).
17. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeck, R., McCaughey, M. J., Woese, C. R.: The ribosomal database project (RDP). Nucleic Acid Res. 24, 82-85 (1996).
18. Manz, W., Amann, R. I., Ludwig, W., Wagner, M., Schleifer, K. H.: Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions. Syst. Appl. Microbiol. 15, 593-600 (1992).
19. Neef, A., Amann, R. I., Schlesner, H., Schleifer, K. H.: Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology UK 144, 3257-3266 (1998).
20. Pynaert, K., Wyffels, S., Sprengers, R., Boeckx, P., Van Cleemput, O., Verstraete, W.: Oxygen-limited nitrogen removal in a lab-scale rotating biological contactor treating an ammonium-rich wastewater. Water Sci. Technol. 45, 357-363 (2002).
21. Schmid, M., Schmitz-Esser, S., Jetten, M. S. M. Wagner, M.: 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Environ. Microbiol. 3[7], 450-459 (2001).
22. Schmid, M., Twachtmann, U., Klein, M., Strous, M., Juretschko, S., Jetten, M. S. M., Metzger, J. W., Schleifer, K. H., Wagner, M.: Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Syst. Appl. Microbiol. 23[1], 93-106 (2000).
23. Sinninghe Damste, J. S., Strous, M., Rijpstra, W. I. C., Hopmans, E. C., Geenevasen, J. A. J., Van Duin, A. C. T., Van Niftrik, L. A., Jetten, M. S. M.: Linearly concatenated cyclobutane lipids form a dense bacterial membrane. Nature 419, 708-712 (2002).
24. Sittig, M., Schlesner, H.: Chemotaxonomic investigation of various prosthecate and/or budding bacteria. Syst. Appl. Microbiol. 16, 92-103 (1993).
25. Strous, M., Fuerst, J. A., Kramer, E. H. M., Logemann, S., Muyzer, G., Van de Pas-Schoonen, K. T., Webb, R., Kuenen, J. G., Jetten, M. S. M.: Missing lithotroph identified as new planctomycete. Nature 400[6743], 446-449 (1999).
26. Strous, M., Heijnen, J. J., Kuenen, J. G., Jetten, M. S. M.: The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms. Appl. Microbiol. Biotechnol. 50[5], 589-596 (1998).
27. Strous, M., Kuenen, J. G., Fuerst, J. A., Wagner, M., Jetten, M. S. M.: The anammox case - A new experimental manifesto for microbiological eco-physiology. Anton. Leeuwenhoek Int. J. Gen. M. 81, 693-702 (2002).
28. Strous, M., Kuenen, J. G., Jetten, M. S. M.: The key physiological parameters of the anaerobic ammonium oxidation process. Appl. Environ. Microbiol. 65[7], 3248-3250 (1999).
29. Strunk, O., Ludwig W.: ARB software program package; http://www.biol.chemie.tu-muenchen.de/pup/ARB/. (1997).
30. Van de Graaf, A. A., Mulder, A., De Bruijn, P., Jetten, M. S. M., Robertson, L. A., Kuenen, J. G.: Anaerobic oxidation of ammonium is a biologically mediated process. Appl. Environ. Microbiol. 61, 1246-1251 (1995).
31. Wagner, M., Amann, R., Kämpfer, P., Assmus, B., Hartmann, A., Hutzler, P., Springer, N., Schleifer, K.H.: Identification and in situ detection of gram-negative filamentous bacteria in activated sludge. System. Appl. Microbiol. 17, 405-417 (1994).
32. Zhou, J., Bruns, M. A., Tiedje, J. M.: DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62, 316-322 (1996).