The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox

Limnology and Oceanography

Volumn 52, Issue 2, 2007, Pages 780-786

  Jaeschke, Andrea ^a   Hopmans, Ellen C ^a   Wakeham, Stuart G ^b   Schouten, Stefan ^a   Damsté, Jaap S Sinninghe ^a  

^a ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^b SKIDAWAY INSTITUTE OF OCEANOGRAPHY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIUM; LIPID; NITROGEN; OXIDATION; OXYGEN MINIMUM LAYER; SEDIMENT TRAP; SUSPENDED PARTICULATE MATTER;

ARABIAN SEA; ASIA; EURASIA; INDIAN OCEAN; MIDDLE EAST; OMAN;

BACTERIA (MICROORGANISMS);

EID: 34250867885     PISSN: 00243590     EISSN: None     Source Type: Journal    
DOI: 10.4319/lo.2007.52.2.0780     Document Type: Article

References (32)

1. BANGE, H. W., T. RIXEN, A. M. JOHANSEN, R. L. SIEFERT, R. RAMESH, V. ITTEKKOT, M. R. HOFFMANN, AND M. O. ANDREAE. 2000. A revised nitrogen budget for the Arabian Sea. Global Biogeochem. Cycles 14: 1283-1297.
2. BRANDES, J. A., AND A. H. DEVOL. 2002. A global marine-fixed nitrogen isotopic budget: Implications for Holocene nitrogen cycling. Global Biogeochem. Cycles 16: 1120 [doi: 10.1029/ 2001GB001856].
3. CODISPOTI, L. A. 1989. Phosphorus vs. nitrogen limitation of new (export) production, p. 377-394. In W. Berger, V. Smetacek, and G. Wefer [eds.], Productivity of the Ocean: Present and Past. Wiley.
4. _, AND J. P. CHRISTENSEN. 1985. Nitrification, denitrification and nitrous oxide cycling the Eastern Tropical South Pacific Ocean. Marine Chem. 16: 277-300.
5. 2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica. Nature 422: 606-608.
6. _, AND B. THAMDRUP. 2002. Factors controlling anaerobic ammonium oxidation with nitrite in marine sediments. Appl. Environ. Microbiol. 68: 3802-3808.
7. DEVOL, A. H., S. W. A. NAQVI, AND L. A CODISPOTI. 2006. Nitrogen cycling in the suboxic waters of the Arabian Sea, p. 283-310. In L. N. Neretin [ed.], Past and Present Water Column Anoxia. NATO Science Series 64.
8. GRUBER, N., AND J. L. SARMIENTO. 1997. Global patterns of marine nitrogen fixation and denitrification. Global Biogeochem. Cycles 11: 235-266.
9. HONJO, S., J. DYMOND, W. PRELL, AND V. ITTEKKOT. 1999. Monsoon-controlled export fluxes to the interior of the Arabian Sea. Deep Sea Res. II 46: 1859-1902.
10. HOPMANS, E. C., M. V. M. KIENHUIS, J. E. RATTRAY, A. JAESCHKE, S. SCHOUTEN, AND J. S. SINNINGHE DAMSTÉ. 2006. Improved analysis of ladderane lipids in biomass and sediments using high performance liquid chromatography/atmospheric chemical ionization tandem mass spectrometry. Rap. Comm. Mass Spectr. 20: 2099-2103.
11. KÖNNEKE, M., A. E. BERNHARD, J. R. DE LA TORRE, C. B. WALKER, J. B. WATERBURY, AND D. A. STAHL. 2005. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546.
12. KUYPERS, M. M. M., G. LAVIK, D. WOEBKEN, M. SCHMID, B. M. FUCHS, R. AMANN, B. B. JØRGENSEN, AND M. S. M. JETTEN. 2005. Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. Proc. Natl. Acad. Sci. 102: 6478-6483.
13. _, A. O. SLIEKERS, G. LAVIK, M. SCHMID, B. B. JØRGENSEN, J. G. KUENEN, J. S. SINNINGHE DAMSTÉ, M. STROUS, AND M. S. M. JETTEN. 2003. Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422: 608-611.
14. LEE, C, J. I. HEDGES, S. G. WAKEHAM, AND N. ZHU. 1992. Effectiveness of poisons and preservatives in retarding bacterial activity in sediment trap material. Limnol. Oceanogr. 37: 117-130.
15. MORRISON, J. M., L. A. CODISPOTI, S. GAURIN, B. JONES, V. MANGHNANI, AND Z. ZHENG. 1998. Seasonal variation of hydrographic and nutrient fields during the US JGOFS Arabian Sea Process Study. Deep-Sea Res. II 45: 2053-2101.
16. _, S. L. SMITH, K. W4, C. FLAGG, W. D. GARDNER, S. GAURIN, S. W. A. NAQVI, V. MANGHNANI, L. PROSPERIE, AND J. S. GUNDERSEN. 1999. The oxygen minimum zone in the Arabian Sea during 1995. Deep-Sea Res. II 46: 1903-1931.
17. MULDER, A., A. A. VAN DE GRAAF, L. A. ROBERTSON, AND J. G. KUENEN. 1995. Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor. FEMS Microbiol. Ecol. 16: 177-184.
18. NAQVI, S. W. A. 1991. Geographical extent of denitrification in the Arabian Sea in relation to some physical processes. Oceanologica Acta 14: 281-290.
19. PETERSON, M. L., P. J. HERNES, D. J. THORESON, J. I. HEDGES, C. LEE, AND S. G. WAKEHAM. 1993. Field evaluation of a valved sediment trap. Limnol. Oceanogr. 38: 1741-1761.
20. 2 production in Arctic sea ice. Limnol. Oceanogr. 49: 86-94.
21. SINNINGHE DAMSTÉ, J. S., W. I. C. RIJPSTRA, E. C. HOPMANS, J. A. J. GEENEVASEN, A. C. T. VAN DUIN, L. A. VAN NIFTRIK, AND M. S. M. JETTEN. 2002a. Linearly concatenated cyclobutane lipids form a dense bacterial membrane. Nature 419: 708-712.
22. _, F. G. PRAHL, S. G. WAKEHAM, AND S. SCHOUTEN. 2002b. Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea. Appl. Environ. Microbiol. 68: 2997-3002.
23. _, S. SCHOUTEN, E. C. HOPMANS, A. C. T. VAN DUIN, AND J. A. J. GEENEVASEN. 2002c. Crenarchaeol: The characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota. J. Lipid Res. 43: 1641-1651.
24. SMITH, S., M. ROMAN, I. PRUSOVA, K. WISHNER, K. GOWING, L. A. CODISPOTI, R. BARBER, J. MARRA, AND C. FLAGG. 1998. Seasonal response of zooplankton to monsoonal reversals in the Arabian Sea. Deep-Sea Res. II 45: 2369-2403.
25. STROUS, M., AND OTHERS. 1999. Missing lithotroph identified as new planetomycete. Nature 400: 446-449.
26. _, AND OTHERS. 2006. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440: 790-794.
27. 2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Appl. Environ. Microbiol. 68: 1312-1318.
28. WAKEHAM, S. G., E. A. CANUEL, M. L. PETERSON, J. I. HEDGES, AND C. LEE. 2002. Lipid biomarker fluxes in the Arabian Sea, with comparison to the equatorial Pacific Ocean. Deep-Sea Res. II 49: 2265-2301.
29. WELLER, R. A., M. F. BAUMGARTNER, S. A. JOSEY, A. S. FISCHER, AND J. C. KINDLE. 1998. Atmospheric forcing in the Arabian Sea during 1994-1995: Observations and comparisons with climatology and models. Deep-Sea Res. II 45: 1961-1999.
30. WISHNER, K. F., M. M. GOWING, AND C. GELFMAN. 1998. Mesozooplankton biomass in the upper 1000 m in the Arabian Sea: Overall seasonal and geographic patterns, and relationship to oxygen gradients. Deep-Sea Res. II 45: 2405-2431.
31. WUCHTER, C., B. ABBAS, M. J. L. COOLEN, L. HERFORD, J. VAN BLEIJSWIJK, P. TIMMERS, M. STROUS, E. TEIRA, G. J. HERNDL, J. J. MIDDELBURG, S. SCHOUTEN, AND J. S. SINNINGHE DAMSTÉ. 2006a. Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci. 103: 12317-12322.
32. _, S. SCHOUTEN, S. G. WAKEHAM, AND J. S. SINNINGHE DAMSTÉ. 2006b. Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry. Paleoceanography 21, PA4208, doi:10.1029/2006PA001279.