메뉴 건너뛰기




Volumn 71, Issue 4, 2005, Pages 1677-1684

Biomarkers for in situ detection of anaerobic ammonium-oxidizing (Anammox) bacteria

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; RNA 16S; RNA 23S;

EID: 20244376481     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.4.1677-1684.2005     Document Type: Short Survey
Times cited : (355)

References (57)
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., B. J. Binder, R. J. Olsen, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olsen, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 0037118037 scopus 로고    scopus 로고
    • Phylogeny: A non-thermophilic ancestor for bacteria
    • Brochier, C., and H. Philippe. 2002. Phylogeny: a non-thermophilic ancestor for bacteria. Nature 417:244.
    • (2002) Nature , vol.417 , pp. 244
    • Brochier, C.1    Philippe, H.2
  • 5
    • 0017410731 scopus 로고
    • Two kinds of lithotrophs missing in nature
    • Broda, E. 1977. Two kinds of lithotrophs missing in nature. Z. Allg. Mikrobiol. 17:491-493.
    • (1977) Z. Allg. Mikrobiol. , vol.17 , pp. 491-493
    • Broda, E.1
  • 6
    • 0030877499 scopus 로고    scopus 로고
    • Depletion of pre-16S rRNA in starved Escherichia coli cells
    • Cangelosi, G. A., and W. H. Brabant. 1997. Depletion of pre-16S rRNA in starved Escherichia coli cells. J. Bacteriol. 179:4457-4463.
    • (1997) J. Bacteriol. , vol.179 , pp. 4457-4463
    • Cangelosi, G.A.1    Brabant, W.H.2
  • 7
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., A. Brühl, R. Amann, K.-H. Schleifer, and M. Wagner. 1999. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 10
    • 0037209534 scopus 로고    scopus 로고
    • Evaluation of anammox and denitrification during anaerobic digestion of poultry manure
    • Dong, X., and E. W. Tollner. 2003. Evaluation of anammox and denitrification during anaerobic digestion of poultry manure. Biores. Technol. 86:139-145.
    • (2003) Biores. Technol. , vol.86 , pp. 139-145
    • Dong, X.1    Tollner, E.W.2
  • 11
    • 0035084619 scopus 로고    scopus 로고
    • Enrichment and characterization of an anmmox bacterium from a rotating biological contractor treating ammonium-rich leachate
    • Egli, K., U. Franger, P. J. J. Alvarez, H. R. Siegrist, J. R. Van der Meer, and A. J. B. Zehnder. 2001. Enrichment and characterization of an anmmox bacterium from a rotating biological contractor treating ammonium-rich leachate. Arch. Microbiol. 175:198-207.
    • (2001) Arch. Microbiol. , vol.175 , pp. 198-207
    • Egli, K.1    Franger, U.2    Alvarez, P.J.J.3    Siegrist, H.R.4    Van Der Meer, J.R.5    Zehnder, A.J.B.6
  • 12
    • 0036999752 scopus 로고    scopus 로고
    • Characterization of the microbial community in an anaerobic ammonium-oxidising biofilm cultured on a non-woven biomass carrier
    • Fujii, T., H. Sugino, J. D. Rouse, and K. Furukawa. 2002. Characterization of the microbial community in an anaerobic ammonium-oxidising biofilm cultured on a non-woven biomass carrier. J. Biosci. Bioeng. 94:412-418.
    • (2002) J. Biosci. Bioeng. , vol.94 , pp. 412-418
    • Fujii, T.1    Sugino, H.2    Rouse, J.D.3    Furukawa, K.4
  • 13
    • 0037073115 scopus 로고    scopus 로고
    • Biological treatment of ammonium-rich wastewater by partial nitritation and subsequent anaerobic ammonium oxidation (anammox) in a pilot plant
    • Fux, C., M. Boehler, P. Huber, I. Brunner, and H. R. Siegrist. 2002. Biological treatment of ammonium-rich wastewater by partial nitritation and subsequent anaerobic ammonium oxidation (anammox) in a pilot plant. J. Biotechnol. 99:295-306.
    • (2002) J. Biotechnol. , vol.99 , pp. 295-306
    • Fux, C.1    Boehler, M.2    Huber, P.3    Brunner, I.4    Siegrist, H.R.5
  • 18
    • 0032147190 scopus 로고    scopus 로고
    • Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
    • Juretschko, S., G. Timmermann, M. C. Schmid, K-H. Schleifer, A. Pommerening-Röser, H-P. Koops, and M. Wagner. 1998. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl. Environ. Microbiol. 64:3042-3051.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3042-3051
    • Juretschko, S.1    Timmermann, G.2    Schmid, M.C.3    Schleifer, K.-H.4    Pommerening-Röser, A.5    Koops, H.-P.6    Wagner, M.7
  • 19
    • 0000408280 scopus 로고    scopus 로고
    • Extraordinary anaerobic ammonium oxidising bacteria
    • Kuenen, J. G., and M. S. M. Jetten. 2001. Extraordinary anaerobic ammonium oxidising bacteria. ASM News 67:456-463.
    • (2001) ASM News , vol.67 , pp. 456-463
    • Kuenen, J.G.1    Jetten, M.S.M.2
  • 21
    • 0033831538 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater
    • LaPara, T. M., C. H. Nakatsu, L. Pantea, and J. E. Alleman. 2000. Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl. Environ. Microbiol. 66:3951-3959.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3951-3959
    • LaPara, T.M.1    Nakatsu, C.H.2    Pantea, L.3    Alleman, J.E.4
  • 22
    • 0032986790 scopus 로고    scopus 로고
    • Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure-function analyses in microbial ecology
    • Lee, N., P. H. Nielsen, K. H. Andreasen, S. Juretschko, J. L. Nielsen, K.-H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65:1289-1297.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1289-1297
    • Lee, N.1    Nielsen, P.H.2    Andreasen, K.H.3    Juretschko, S.4    Nielsen, J.L.5    Schleifer, K.-H.6    Wagner, M.7
  • 23
    • 0037258055 scopus 로고    scopus 로고
    • ProbeBase: An online resource for rRNA-targeted oligonucleotide probes
    • Loy, L. A., M. Horn, and M. Wagner. 2003. probeBase: an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res. 31:514-516.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 514-516
    • Loy, L.A.1    Horn, M.2    Wagner, M.3
  • 25
    • 0028940437 scopus 로고
    • Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor
    • Mulder, A., A. A. van de Graaf, L. A. Robertson, and J. G. Kuenen. 1995. Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor. FEMS Microbiol Ecol. 16:177-184.
    • (1995) FEMS Microbiol. Ecol. , vol.16 , pp. 177-184
    • Mulder, A.1    Van De Graaf, A.A.2    Robertson, L.A.3    Kuenen, J.G.4
  • 26
    • 0032424081 scopus 로고    scopus 로고
    • Monitoring a widespread bacterial group: In situ detection of planctomycetes with 16S rRNA-targeted probes
    • Neef, A., R. I. Amann, H. Schlesner, and K.-H. Schleifer. 1998. Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology 144:3257-3266.
    • (1998) Microbiology , vol.144 , pp. 3257-3266
    • Neef, A.1    Amann, R.I.2    Schlesner, H.3    Schleifer, K.-H.4
  • 27
  • 28
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz, M. F., and C. M. Cavanaugh. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:3724-3730.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 29
    • 0027264175 scopus 로고
    • Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
    • Poulsen, L. K., G. Ballard, and D. A. Stahl. 1993. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol. 59:1354-1360.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1354-1360
    • Poulsen, L.K.1    Ballard, G.2    Stahl, D.A.3
  • 30
    • 0038654443 scopus 로고    scopus 로고
    • Characterization of an autotrophic nitrogen-removing biofilm from a highly loaded lab-scale rotating biological contactor
    • Pynaert, K., B. F. Smets, S. Wyffels, D. Beheydt, S. D. Siciliano, and W. Verstraete. 2003. Characterization of an autotrophic nitrogen-removing biofilm from a highly loaded lab-scale rotating biological contactor. Appl. Environ. Microbiol. 69:3626-3635.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3626-3635
    • Pynaert, K.1    Smets, B.F.2    Wyffels, S.3    Beheydt, D.4    Siciliano, S.D.5    Verstraete, W.6
  • 31
    • 0001619717 scopus 로고
    • Anoxic basins and fjords
    • J. P. Ripley and G. Skirrow (ed.), Academic Press, London, United Kingdom
    • Richards, F. A. 1965. Anoxic basins and fjords. In J. P. Ripley and G. Skirrow (ed.), Chemical oceanography, p. 611-645. Academic Press, London, United Kingdom.
    • (1965) Chemical Oceanography , pp. 611-645
    • Richards, F.A.1
  • 33
    • 0034625054 scopus 로고    scopus 로고
    • Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation
    • Schalk, J., S. DeVries, J. G. Kuenen, and M. S. M. Jetten. 2000. Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation. Biochemistry 39:5405-5412.
    • (2000) Biochemistry , vol.39 , pp. 5405-5412
    • Schalk, J.1    DeVries, S.2    Kuenen, J.G.3    Jetten, M.S.M.4
  • 35
    • 0035210373 scopus 로고    scopus 로고
    • 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: Implications for phylogeny and in situ detection
    • Schmid, M., S. Schmitz-Esser, M. Jetten, and M. Wagner. 2001. 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Environ. Microbiol. 3:450-459.
    • (2001) Environ. Microbiol. , vol.3 , pp. 450-459
    • Schmid, M.1    Schmitz-Esser, S.2    Jetten, M.3    Wagner, M.4
  • 40
    • 0036562875 scopus 로고    scopus 로고
    • Completely autotrophic ammonia removal over nitrite in a single reactor system
    • Sliekers, A. O., N. Derwort, L. Campos, J. G. Kuenen, M. Strous, and M. S. M. Jetten. 2002. Completely autotrophic ammonia removal over nitrite in a single reactor system. Water Res. 36:2475-2482.
    • (2002) Water Res. , vol.36 , pp. 2475-2482
    • Sliekers, A.O.1    Derwort, N.2    Campos, L.3    Kuenen, J.G.4    Strous, M.5    Jetten, M.S.M.6
  • 41
    • 0031762559 scopus 로고    scopus 로고
    • The sequencing batch reactor as a powerful tool to study very slowly growing microorganisms
    • Strous, M., J. J. Heijnen, J. G. Kuenen, and M. S. M. Jetten. 1998. The sequencing batch reactor as a powerful tool to study very slowly growing microorganisms. Appl. Microbiol. Biotechnol. 50:589-596.
    • (1998) Appl. Microbiol. Biotechnol. , vol.50 , pp. 589-596
    • Strous, M.1    Heijnen, J.J.2    Kuenen, J.G.3    Jetten, M.S.M.4
  • 43
    • 0036419572 scopus 로고    scopus 로고
    • The anammox case: A new experimental manifesto for microbiological eco-physiology
    • Strous, M., J. G. Kuenen, J. A. Fuerst, M. Wagner, and M. S. M. Jetten. 2002. The anammox case: a new experimental manifesto for microbiological eco-physiology. Antonie Leeuwenhoek 81:693-702.
    • (2002) Antonie Leeuwenhoek , vol.81 , pp. 693-702
    • Strous, M.1    Kuenen, J.G.2    Fuerst, J.A.3    Wagner, M.4    Jetten, M.S.M.5
  • 44
    • 9244252034 scopus 로고    scopus 로고
    • Anaerobic oxidation of ammonium and methane
    • Strous, M., and M. S. M. Jetten. 2004. Anaerobic oxidation of ammonium and methane. Ann. Rev. Microbiol. 53:99-117.
    • (2004) Ann. Rev. Microbiol. , vol.53 , pp. 99-117
    • Strous, M.1    Jetten, M.S.M.2
  • 45
    • 0037427769 scopus 로고    scopus 로고
    • Characterization of the microbial community and nitrogen transformation processes associated with moving bed bioreactors in a closed recirculated mariculture system
    • Tal, Y., J. E. M. Watts, S. B. Schreier, K. R. Sowers, and H. J. Schreier. 2003. Characterization of the microbial community and nitrogen transformation processes associated with moving bed bioreactors in a closed recirculated mariculture system. Aquaculture 215:187-202.
    • (2003) Aquaculture , vol.215 , pp. 187-202
    • Tal, Y.1    Watts, J.E.M.2    Schreier, S.B.3    Sowers, K.R.4    Schreier, H.J.5
  • 46
    • 0036197004 scopus 로고    scopus 로고
    • 2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments
    • 2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Appl. Environ. Microbiol. 68:1312-1318.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1312-1318
    • Thamdrup, B.1    Dalsgaard, T.2
  • 47
    • 0035705893 scopus 로고    scopus 로고
    • The CANON system (completely autotrophic nitrogen-removal over nitrite) under ammonium limitation: Interaction and competition between three groups of bacteria
    • Third, K., A. O. Sliekers, J. G. Kuenen, and M. S. M. Jetten. 2001. The CANON system (completely autotrophic nitrogen-removal over nitrite) under ammonium limitation: interaction and competition between three groups of bacteria. Syst. Appl. Microbiol. 24:588-596.
    • (2001) Syst. Appl. Microbiol. , vol.24 , pp. 588-596
    • Third, K.1    Sliekers, A.O.2    Kuenen, J.G.3    Jetten, M.S.M.4
  • 48
    • 0036318588 scopus 로고    scopus 로고
    • Adaptation of anaerobic ammonium-oxidising consortium to synthetic coke-ovens wastewater
    • Toh, S. K., and N. J. Ashbolt. 2002. Adaptation of anaerobic ammonium-oxidising consortium to synthetic coke-ovens wastewater. Appl. Microbiol. Biotechnol. 59:344-352.
    • (2002) Appl. Microbiol. Biotechnol. , vol.59 , pp. 344-352
    • Toh, S.K.1    Ashbolt, N.J.2
  • 49
    • 0242489226 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation measured in sediments along the Thames estuary, United Kingdom
    • Trimmer, M., J. C. Nicholls, and B. Deflandre. 2003. Anaerobic ammonium oxidation measured in sediments along the Thames estuary, United Kingdom. Appl. Environ. Microbiol. 69:6447-6454.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6447-6454
    • Trimmer, M.1    Nicholls, J.C.2    Deflandre, B.3
  • 51
    • 0030795645 scopus 로고    scopus 로고
    • Metabolic pathway of anaerobic ammonium oxidation on the basis of N-15 studies in a fluidized bed reactor
    • Van de Graaf, A. A., P. De Bruijn, L. A. Robertson, M. S. M. Jetten, and J. G. Kuenen. 1997. Metabolic pathway of anaerobic ammonium oxidation on the basis of N-15 studies in a fluidized bed reactor. Microbiology 143:2415-2421.
    • (1997) Microbiology , vol.143 , pp. 2415-2421
    • Van De Graaf, A.A.1    De Bruijn, P.2    Robertson, L.A.3    Jetten, M.S.M.4    Kuenen, J.G.5
  • 52
    • 0034742536 scopus 로고    scopus 로고
    • The Sharon-anammox process for the treatment of ammonium rich wastewater
    • Van Dongen, U., M. S. M. Jetten, and M. C. M. van Loosdrecht. 2001. The Sharon-anammox process for the treatment of ammonium rich wastewater. Water Sci. Technol. 44:153-160.
    • (2001) Water Sci. Technol. , vol.44 , pp. 153-160
    • Van Dongen, U.1    Jetten, M.S.M.2    Van Loosdrecht, M.C.M.3
  • 56
    • 0034526970 scopus 로고    scopus 로고
    • Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny
    • Ward, N. L., F. A. Rainey, B. P. Hedlund, J. T. Staley, W. Ludwig, and E. Stackebrandt. 2000. Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int. J. Syst. Evol. Microbiol. 50:1965-1972.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1965-1972
    • Ward, N.L.1    Rainey, F.A.2    Hedlund, B.P.3    Staley, J.T.4    Ludwig, W.5    Stackebrandt, E.6
  • 57
    • 0029859948 scopus 로고    scopus 로고
    • Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies
    • Zheng, D., E. W. Alm, D. A. Stahl, and L. Raskin. 1996. Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl. Environ. Microbiol. 62:4504-4513.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4504-4513
    • Zheng, D.1    Alm, E.W.2    Stahl, D.A.3    Raskin, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.