-
1
-
-
33646799407
-
Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory
-
Ahmed A., Gohlke H. Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory. Proteins 2006, 63:1038-1051.
-
(2006)
Proteins
, vol.63
, pp. 1038-1051
-
-
Ahmed, A.1
Gohlke, H.2
-
2
-
-
0003156161
-
Entropic analysis of random morphologies
-
Andraud C., Beghdadi A., Lafait J. Entropic analysis of random morphologies. Physica A 1994, 207:208-212.
-
(1994)
Physica A
, vol.207
, pp. 208-212
-
-
Andraud, C.1
Beghdadi, A.2
Lafait, J.3
-
3
-
-
18744405663
-
Stepwise adaptations of citrate synthase to survival at life's extremes
-
Bell G.S., Russell R.J.M., Connaris H., Hough D.W., Danson M.J., Taylor G.L. Stepwise adaptations of citrate synthase to survival at life's extremes. Eur. J. Biochem. 2002, 269:6250-6260.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 6250-6260
-
-
Bell, G.S.1
Russell, R.J.M.2
Connaris, H.3
Hough, D.W.4
Danson, M.J.5
Taylor, G.L.6
-
4
-
-
0033954256
-
The protein data bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. The protein data bank. Nucleic Acids Res. 2000, 28:235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
34249910312
-
Network analysis of protein dynamics
-
Böde C., Kovács I.A., Szalay M.S., Palotai R., Korcsmáros T., Csermely P. Network analysis of protein dynamics. FEBS Lett. 2007, 581:2776-2782.
-
(2007)
FEBS Lett.
, vol.581
, pp. 2776-2782
-
-
Böde, C.1
Kovács, I.A.2
Szalay, M.S.3
Palotai, R.4
Korcsmáros, T.5
Csermely, P.6
-
6
-
-
34247215529
-
Discovery of a thermophilic protein complex stabilized by topologically interlinked chains
-
Boutz D.R., Cascio D., Whitelegge J., Perry L.J., Yeates T.O. Discovery of a thermophilic protein complex stabilized by topologically interlinked chains. J. Mol. Biol. 2007, 368:1332-1344.
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 1332-1344
-
-
Boutz, D.R.1
Cascio, D.2
Whitelegge, J.3
Perry, L.J.4
Yeates, T.O.5
-
7
-
-
46149125316
-
Double-sigmoid model for fitting fatigue profiles in mouse fast- and slow-twitch muscle
-
Cairns S.P., Robinson D.M., Loiselle D.S. Double-sigmoid model for fitting fatigue profiles in mouse fast- and slow-twitch muscle. Exp. Physiol. 2008, 93:851-862.
-
(2008)
Exp. Physiol.
, vol.93
, pp. 851-862
-
-
Cairns, S.P.1
Robinson, D.M.2
Loiselle, D.S.3
-
8
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case D.A., Cheatham T.E., Darden T., Gohlke H., Luo R., Merz K.M., Onufriev A., Simmerling C., Wang B., Woods R.J. The Amber biomolecular simulation programs. J. Comput. Chem. 2005, 26:1668-1688.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
10
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell W.D., Cieplak P., Bayly C.I., Gould I.R., Merz K.M., Ferguson D.M., Spellmeyer D.C., Fox T., Caldwell J.W., Kollman P.A. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 1995, 117:5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
12
-
-
0343742614
-
Automated design of the surface positions of protein helices
-
Dahiyat B.I., Gordon D.B., Mayo S.L. Automated design of the surface positions of protein helices. Protein Sci. 1997, 6:1333-1337.
-
(1997)
Protein Sci.
, vol.6
, pp. 1333-1337
-
-
Dahiyat, B.I.1
Gordon, D.B.2
Mayo, S.L.3
-
13
-
-
2442612037
-
Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling
-
Daidone I., Roccatano D., Hayward S. Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling. J. Mol. Biol. 2004, 339:515-525.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 515-525
-
-
Daidone, I.1
Roccatano, D.2
Hayward, S.3
-
14
-
-
33846823909
-
Particle mesh Ewald: an N.log (N) method for Ewald sums in large systems
-
Darden T., York D., Pedersen L. Particle mesh Ewald: an N.log (N) method for Ewald sums in large systems. J. Chem. Phys. 1993, 98:10089-10092.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
15
-
-
0014963118
-
A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile
-
Darland G., Brock T.D., Samsonoff W., Conti S.F. A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile. Science 1970, 170:1416-1418.
-
(1970)
Science
, vol.170
, pp. 1416-1418
-
-
Darland, G.1
Brock, T.D.2
Samsonoff, W.3
Conti, S.F.4
-
17
-
-
0025370815
-
Dominant forces in protein folding
-
Dill K.A. Dominant forces in protein folding. Biochemistry 1990, 29:7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
18
-
-
4544244867
-
Rational engineering of enzyme stability
-
Eijsink V.G.H., Bjørk A., Gåseidnes S., Sirevåg R., Synstad B., Burg B., Vriend G. Rational engineering of enzyme stability. J. Biotechnol. 2004, 113:105-120.
-
(2004)
J. Biotechnol.
, vol.113
, pp. 105-120
-
-
Eijsink, V.G.H.1
Bjørk, A.2
Gåseidnes, S.3
Sirevåg, R.4
Synstad, B.5
Burg, B.6
Vriend, G.7
-
19
-
-
18044369861
-
Directed evolution of enzyme stability
-
Eijsink V.G.H., Gaseidnes S., Borchert T.V., van den Burg B. Directed evolution of enzyme stability. Biomol. Eng. 2005, 22:21-30.
-
(2005)
Biomol. Eng.
, vol.22
, pp. 21-30
-
-
Eijsink, V.G.H.1
Gaseidnes, S.2
Borchert, T.V.3
van den Burg, B.4
-
20
-
-
44849090619
-
Analysing the flexibility of RNA structures by constraint counting
-
Fulle S., Gohlke H. Analysing the flexibility of RNA structures by constraint counting. Biophys. J. 2008, 94:4202-4219.
-
(2008)
Biophys. J.
, vol.94
, pp. 4202-4219
-
-
Fulle, S.1
Gohlke, H.2
-
21
-
-
70349299861
-
Constraint counting on RNA structures: linking flexibility and function
-
Fulle S., Gohlke H. Constraint counting on RNA structures: linking flexibility and function. Methods 2009, 49:181-188.
-
(2009)
Methods
, vol.49
, pp. 181-188
-
-
Fulle, S.1
Gohlke, H.2
-
22
-
-
61649098586
-
Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding
-
Fulle S., Gohlke H. Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding. J. Mol. Biol. 2009, 387:502-517.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 502-517
-
-
Fulle, S.1
Gohlke, H.2
-
23
-
-
3042806330
-
Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach
-
Gohlke H., Kuhn L.A., Case D.A. Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach. Proteins 2004, 56:322-337.
-
(2004)
Proteins
, vol.56
, pp. 322-337
-
-
Gohlke, H.1
Kuhn, L.A.2
Case, D.A.3
-
24
-
-
33748448490
-
A natural coarse graining for simulating large biomolecular motion
-
Gohlke H., Thorpe M.F. A natural coarse graining for simulating large biomolecular motion. Biophys. J. 2006, 91:2115-2120.
-
(2006)
Biophys. J.
, vol.91
, pp. 2115-2120
-
-
Gohlke, H.1
Thorpe, M.F.2
-
25
-
-
0242720597
-
Uncovering network systems within protein structures
-
Greene L.H., Higman V.A. Uncovering network systems within protein structures. J. Mol. Biol. 2003, 334:781-791.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 781-791
-
-
Greene, L.H.1
Higman, V.A.2
-
26
-
-
0032715527
-
Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins
-
Gromiha M.M., Oobatake M., Sarai A. Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins. Biophys. Chem. 1999, 82:51-67.
-
(1999)
Biophys. Chem.
, vol.82
, pp. 51-67
-
-
Gromiha, M.M.1
Oobatake, M.2
Sarai, A.3
-
27
-
-
0037411739
-
Developments in industrially important thermostable enzymes: a review
-
Haki G.D., Rakshit S.K. Developments in industrially important thermostable enzymes: a review. Bioresour. Technol. 2003, 89:17-34.
-
(2003)
Bioresour. Technol.
, vol.89
, pp. 17-34
-
-
Haki, G.D.1
Rakshit, S.K.2
-
28
-
-
68749107059
-
Protein sectors: evolutionary units of three-dimensional structure
-
Halabi N., Rivoire O., Leibler S., Ranganathan R. Protein sectors: evolutionary units of three-dimensional structure. Cell 2009, 138:774-786.
-
(2009)
Cell
, vol.138
, pp. 774-786
-
-
Halabi, N.1
Rivoire, O.2
Leibler, S.3
Ranganathan, R.4
-
30
-
-
0036888379
-
Identifying protein folding cores from the evolution of flexible regions during unfolding
-
Hespenheide B.M., Rader A.J., Thorpe M.F., Kuhn L.A. Identifying protein folding cores from the evolution of flexible regions during unfolding. J. Mol. Graph. Model. 2002, 21:195-207.
-
(2002)
J. Mol. Graph. Model.
, vol.21
, pp. 195-207
-
-
Hespenheide, B.M.1
Rader, A.J.2
Thorpe, M.F.3
Kuhn, L.A.4
-
31
-
-
0030047142
-
Errors in protein structures
-
Hooft R.W.W., Vriend G., Sander C., Abola E.E. Errors in protein structures. Nature 1996, 381:272.
-
(1996)
Nature
, vol.381
, pp. 272
-
-
Hooft, R.W.W.1
Vriend, G.2
Sander, C.3
Abola, E.E.4
-
32
-
-
0032493601
-
Generic rigidity in three-dimensional bond-bending networks
-
Jacobs D.J. Generic rigidity in three-dimensional bond-bending networks. J. Phys. A: Math. Gen. 1998, 31:6653-6668.
-
(1998)
J. Phys. A: Math. Gen.
, vol.31
, pp. 6653-6668
-
-
Jacobs, D.J.1
-
33
-
-
21244483843
-
Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity
-
Jacobs D.J., Dallakyan S. Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity. Biophys. J. 2005, 88:903-915.
-
(2005)
Biophys. J.
, vol.88
, pp. 903-915
-
-
Jacobs, D.J.1
Dallakyan, S.2
-
34
-
-
1542285840
-
Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems
-
Jacobs D.J., Dallakyan S., Wood G.G., Heckathorne A. Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems. Phys. Rev. E: Stat. Nonlin. Soft Matter Phys. 2003, 68:061109.
-
(2003)
Phys. Rev. E: Stat. Nonlin. Soft Matter Phys.
, vol.68
, pp. 061109
-
-
Jacobs, D.J.1
Dallakyan, S.2
Wood, G.G.3
Heckathorne, A.4
-
35
-
-
0031281604
-
An algorithm for two-dimensional rigidity percolation: the pebble game
-
Jacobs D.J., Hendrickson B. An algorithm for two-dimensional rigidity percolation: the pebble game. J. Comput. Phys. 1997, 137:346-365.
-
(1997)
J. Comput. Phys.
, vol.137
, pp. 346-365
-
-
Jacobs, D.J.1
Hendrickson, B.2
-
36
-
-
0035427398
-
Protein flexibility predictions using graph theory
-
Jacobs D.J., Rader A.J., Kuhn L.A., Thorpe M.F. Protein flexibility predictions using graph theory. Proteins 2001, 44:150-165.
-
(2001)
Proteins
, vol.44
, pp. 150-165
-
-
Jacobs, D.J.1
Rader, A.J.2
Kuhn, L.A.3
Thorpe, M.F.4
-
37
-
-
0000785338
-
Generic rigidity percolation: the pebble game
-
Jacobs D.J., Thorpe M.F. Generic rigidity percolation: the pebble game. Phys. Rev. Lett. 1995, 75:4051-4054.
-
(1995)
Phys. Rev. Lett.
, vol.75
, pp. 4051-4054
-
-
Jacobs, D.J.1
Thorpe, M.F.2
-
38
-
-
0032438190
-
The stability of proteins in extreme environments
-
Jaenicke R., Böhm G. The stability of proteins in extreme environments. Curr. Opin. Struct. Biol. 1998, 8:738-748.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 738-748
-
-
Jaenicke, R.1
Böhm, G.2
-
39
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen W.L., Chandrasekhar J., Madura J.D., Impey R.W., Klein M.L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 1983, 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
40
-
-
0034495733
-
Aromatic clusters: a determinant of thermal stability of thermophilic proteins
-
Kannan N., Vishveshwara S. Aromatic clusters: a determinant of thermal stability of thermophilic proteins. Protein Eng. 2000, 13:753-761.
-
(2000)
Protein Eng.
, vol.13
, pp. 753-761
-
-
Kannan, N.1
Vishveshwara, S.2
-
41
-
-
84860835970
-
Analyzing protein rigidity for understanding and improving thermal adaptation
-
CRC Press Taylor & Francis Group, Boca Raton, S. Sen, L. Nilsson (Eds.)
-
Klein D.L., Radestock S., Gohlke H. Analyzing protein rigidity for understanding and improving thermal adaptation. Thermophilic Proteins: Structural Stability and Design Strategies 2011, 47-67. CRC Press Taylor & Francis Group, Boca Raton. S. Sen, L. Nilsson (Eds.).
-
(2011)
Thermophilic Proteins: Structural Stability and Design Strategies
, pp. 47-67
-
-
Klein, D.L.1
Radestock, S.2
Gohlke, H.3
-
42
-
-
67449092526
-
Structure of pig heart citrate synthase at 1.78Å resolution
-
Larson S.B., Day J.S., Nguyen C., Cudney R., McPherson A. Structure of pig heart citrate synthase at 1.78Å resolution. Acta Crystallogr. Sect. F: Struct. Biol. Cryst. Commun. 2009, 65:430-434.
-
(2009)
Acta Crystallogr. Sect. F: Struct. Biol. Cryst. Commun.
, vol.65
, pp. 430-434
-
-
Larson, S.B.1
Day, J.S.2
Nguyen, C.3
Cudney, R.4
McPherson, A.5
-
43
-
-
0035424955
-
Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution
-
Lehmann M., Wyss M. Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution. Curr. Opin. Biotechnol. 2001, 12:371-375.
-
(2001)
Curr. Opin. Biotechnol.
, vol.12
, pp. 371-375
-
-
Lehmann, M.1
Wyss, M.2
-
44
-
-
34250799148
-
Protein engineering: opportunities and challenges
-
Leisola M., Turunen O. Protein engineering: opportunities and challenges. Appl. Microbiol. Biotechnol. 2007, 75:1225-1232.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.75
, pp. 1225-1232
-
-
Leisola, M.1
Turunen, O.2
-
45
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
Lockless S.W., Ranganathan R. Evolutionarily conserved pathways of energetic connectivity in protein families. Science 1999, 286:295-299.
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
46
-
-
27744445169
-
Protein flexibility using constraints from molecular dynamics simulations
-
Mamonova T., Hespenheide B., Straub R., Thorpe M.F., Kurnikova M. Protein flexibility using constraints from molecular dynamics simulations. Phys. Biol. 2005, 2:S137-S147.
-
(2005)
Phys. Biol.
, vol.2
-
-
Mamonova, T.1
Hespenheide, B.2
Straub, R.3
Thorpe, M.F.4
Kurnikova, M.5
-
47
-
-
0015955554
-
Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa
-
Oshima T., Imahori K. Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa. Int. J. Syst. Bacteriol. 1974, 24:102-112.
-
(1974)
Int. J. Syst. Bacteriol.
, vol.24
, pp. 102-112
-
-
Oshima, T.1
Imahori, K.2
-
48
-
-
34047128801
-
Stability of biocatalysts
-
Polizzi K.M., Bommarius A.S., Broering J.M., Chaparro-Riggers J.F. Stability of biocatalysts. Curr. Opin. Chem. Biol. 2007, 11:220-225.
-
(2007)
Curr. Opin. Chem. Biol.
, vol.11
, pp. 220-225
-
-
Polizzi, K.M.1
Bommarius, A.S.2
Broering, J.M.3
Chaparro-Riggers, J.F.4
-
49
-
-
0024199422
-
Stability of protein structure and hydrophobic interaction
-
Privalov P.L., Gill S.J. Stability of protein structure and hydrophobic interaction. Adv. Protein Chem. 1988, 39:191-234.
-
(1988)
Adv. Protein Chem.
, vol.39
, pp. 191-234
-
-
Privalov, P.L.1
Gill, S.J.2
-
50
-
-
0037223885
-
Aromatic stacking as a determinant of the thermal stability of CYP119 from Sulfolobus solfataricus
-
Puchkaev A.V., Koo L.S., Ortiz de Montellano P.R. Aromatic stacking as a determinant of the thermal stability of CYP119 from Sulfolobus solfataricus. Arch. Biochem. Biophys. 2003, 409:52-58.
-
(2003)
Arch. Biochem. Biophys.
, vol.409
, pp. 52-58
-
-
Puchkaev, A.V.1
Koo, L.S.2
Ortiz de Montellano, P.R.3
-
51
-
-
0346492917
-
Folding core predictions from network models of proteins
-
Rader A.J., Bahar I. Folding core predictions from network models of proteins. Polymer 2004, 45:659-668.
-
(2004)
Polymer
, vol.45
, pp. 659-668
-
-
Rader, A.J.1
Bahar, I.2
-
52
-
-
0037133552
-
Protein unfolding: rigidity lost
-
Rader A.J., Hespenheide B.M., Kuhn L.A., Thorpe M.F. Protein unfolding: rigidity lost. Proc. Natl. Acad. Sci. U. S. A. 2002, 99:3540-3545.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 3540-3545
-
-
Rader, A.J.1
Hespenheide, B.M.2
Kuhn, L.A.3
Thorpe, M.F.4
-
54
-
-
61649103550
-
Exploiting the link between protein rigidity and thermostability for data-driven protein engineering
-
Radestock S., Gohlke H. Exploiting the link between protein rigidity and thermostability for data-driven protein engineering. Eng. Life Sci. 2008, 8:507-522.
-
(2008)
Eng. Life Sci.
, vol.8
, pp. 507-522
-
-
Radestock, S.1
Gohlke, H.2
-
55
-
-
79952487469
-
Protein rigidity and thermophilic adaptation
-
Radestock S., Gohlke H. Protein rigidity and thermophilic adaptation. Proteins 2011, 79:1089-1108.
-
(2011)
Proteins
, vol.79
, pp. 1089-1108
-
-
Radestock, S.1
Gohlke, H.2
-
56
-
-
84860834274
-
Statics of biomacromolecules
-
Wiley-VCH, Weinheim, P. Comba (Ed.)
-
Rathi P.C., Pfleger C., Fulle S., Klein D.L., Gohlke H. Statics of biomacromolecules. Molecular Modeling 2011, 281-299. Wiley-VCH, Weinheim. P. Comba (Ed.).
-
(2011)
Molecular Modeling
, pp. 281-299
-
-
Rathi, P.C.1
Pfleger, C.2
Fulle, S.3
Klein, D.L.4
Gohlke, H.5
-
57
-
-
33845288649
-
Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability
-
Reetz M.T., Carballeira J.D., Vogel A. Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability. Angew. Chem. Int. Ed. Engl. 2006, 45:7745-7751.
-
(2006)
Angew. Chem. Int. Ed. Engl.
, vol.45
, pp. 7745-7751
-
-
Reetz, M.T.1
Carballeira, J.D.2
Vogel, A.3
-
58
-
-
0020483375
-
Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7Å resolution
-
Remington S., Wiegand G., Huber R. Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7Å resolution. J. Mol. Biol. 1982, 158:111-152.
-
(1982)
J. Mol. Biol.
, vol.158
, pp. 111-152
-
-
Remington, S.1
Wiegand, G.2
Huber, R.3
-
59
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
-
Ryckaert J.P., Ciccotti G., Berendsen H.J.C. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 1977, 23:327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
60
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A., Blundell T.L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 1993, 234:779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
61
-
-
0030834850
-
Temperature, stability, and the hydrophobic interaction
-
Schellman J.A. Temperature, stability, and the hydrophobic interaction. Biophys. J. 1997, 73:2960-2964.
-
(1997)
Biophys. J.
, vol.73
, pp. 2960-2964
-
-
Schellman, J.A.1
-
62
-
-
0037174385
-
All-atom structure prediction and folding simulations of a stable protein
-
Simmerling C., Strockbine B., Roitberg A.E. All-atom structure prediction and folding simulations of a stable protein. J. Am. Chem. Soc. 2002, 124:11258-11259.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 11258-11259
-
-
Simmerling, C.1
Strockbine, B.2
Roitberg, A.E.3
-
63
-
-
0002353040
-
Temperature adaptation of enzymes: biological optimization through structure-function compromises
-
Somero G.N. Temperature adaptation of enzymes: biological optimization through structure-function compromises. Annu. Rev. Ecol. Syst. 1978, 9:1-29.
-
(1978)
Annu. Rev. Ecol. Syst.
, vol.9
, pp. 1-29
-
-
Somero, G.N.1
-
64
-
-
70449727646
-
Functional metagenomics for enzyme discovery: challenges to efficient screening
-
Uchiyama T., Miyazaki K. Functional metagenomics for enzyme discovery: challenges to efficient screening. Curr. Opin. Biotechnol. 2009, 20:616-622.
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 616-622
-
-
Uchiyama, T.1
Miyazaki, K.2
-
65
-
-
0037590011
-
Extremophiles as a source for novel enzymes
-
Van den Burg B. Extremophiles as a source for novel enzymes. Curr. Opin. Microbiol. 2003, 6:213-218.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 213-218
-
-
Van den Burg, B.1
-
66
-
-
0035098779
-
Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability
-
Vieille C., Zeikus G.J. Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 2001, 65:1-43.
-
(2001)
Microbiol. Mol. Biol. Rev.
, vol.65
, pp. 1-43
-
-
Vieille, C.1
Zeikus, G.J.2
-
67
-
-
0027337482
-
Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum
-
Volkl P., Huber R., Drobner E., Rachel R., Burggraf S., Trincone A., Stetter K.O. Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum. Appl. Environ. Microbiol. 1993, 59:2918-2926.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2918-2926
-
-
Volkl, P.1
Huber, R.2
Drobner, E.3
Rachel, R.4
Burggraf, S.5
Trincone, A.6
Stetter, K.O.7
-
68
-
-
0022510144
-
Citrate synthase: structure, control, and mechanism
-
Wiegand G., Remington S.J. Citrate synthase: structure, control, and mechanism. Annu. Rev. Biophys. Biophys. Chem. 1986, 15:97-117.
-
(1986)
Annu. Rev. Biophys. Biophys. Chem.
, vol.15
, pp. 97-117
-
-
Wiegand, G.1
Remington, S.J.2
-
69
-
-
0033614004
-
Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation
-
Word J.M., Lovell S.C., Richardson J.S., Richardson D.C. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. J. Mol. Biol. 1999, 285:1735-1747.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1735-1747
-
-
Word, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
70
-
-
0018928663
-
The Sulfolobus-Caldariella group: taxonomy on the basis of the structure of DNA-dependent RNA polymerases
-
Zillig W., Stetter K.O., Wunderl S., Schulz W., Priess H., Scholz I. The Sulfolobus-Caldariella group: taxonomy on the basis of the structure of DNA-dependent RNA polymerases. Arch. Microbiol. 1980, 125:259-269.
-
(1980)
Arch. Microbiol.
, vol.125
, pp. 259-269
-
-
Zillig, W.1
Stetter, K.O.2
Wunderl, S.3
Schulz, W.4
Priess, H.5
Scholz, I.6
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