-
1
-
-
0025370815
-
Dominant forces in protein folding
-
Dill K.A. Dominant forces in protein folding. Biochemistry. 29:1990;7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
2
-
-
0027256739
-
Hydrogen bonding, hydrophobicity, packing and protein folding
-
Rose G.D., Wolfenden R. Hydrogen bonding, hydrophobicity, packing and protein folding. Ann. Rev. Biophys. Biomol. Str. 22:1993;381-415.
-
(1993)
Ann. Rev. Biophys. Biomol. Str.
, vol.22
, pp. 381-415
-
-
Rose, G.D.1
Wolfenden, R.2
-
3
-
-
0028325958
-
On the conformational stability of folded proteins
-
Ponnuswamy P.K., Gromiha M.M. On the conformational stability of folded proteins. J. Theor. Biol. 166:1994;63-74.
-
(1994)
J. Theor. Biol.
, vol.166
, pp. 63-74
-
-
Ponnuswamy, P.K.1
Gromiha, M.M.2
-
4
-
-
0030059689
-
Forces contributing to the conformational stability of proteins
-
Pace C.N., Shirely B.A., McNutt M., Gajiwala K. Forces contributing to the conformational stability of proteins. FASEB J. 10:1996;75-83.
-
(1996)
FASEB J.
, vol.10
, pp. 75-83
-
-
Pace, C.N.1
Shirely, B.A.2
McNutt, M.3
Gajiwala, K.4
-
5
-
-
0018788367
-
Thermal stability and protein structure
-
Argos P., Rossman M.G., Grau U.M., Zuber H., Frank G., Tratschin J.D. Thermal stability and protein structure. Biochemistry. 18:1979;5698-5703.
-
(1979)
Biochemistry
, vol.18
, pp. 5698-5703
-
-
Argos, P.1
Rossman, M.G.2
Grau, U.M.3
Zuber, H.4
Frank, G.5
Tratschin, J.D.6
-
7
-
-
0027349239
-
Hydration and heat stability effects on protein unfolding
-
Oobatake M., Ooi T. Hydration and heat stability effects on protein unfolding. Prog. Biophys. Mol. Biol. 59:1993;237-284.
-
(1993)
Prog. Biophys. Mol. Biol.
, vol.59
, pp. 237-284
-
-
Oobatake, M.1
Ooi, T.2
-
8
-
-
0023038088
-
A new way of enhancing the thermostability of proteases
-
Imanaka T., Shibazaki M., Takagi M. A new way of enhancing the thermostability of proteases. Nature. 324:1986;695-697.
-
(1986)
Nature
, vol.324
, pp. 695-697
-
-
Imanaka, T.1
Shibazaki, M.2
Takagi, M.3
-
9
-
-
0024974452
-
Engineering protein thermal stability. Sequence statistics point to residue substitutions in alpha helices
-
Menendez-Arias L., Argos P. Engineering protein thermal stability. Sequence statistics point to residue substitutions in alpha helices. J. Mol. Biol. 206:1989;397-406.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 397-406
-
-
Menendez-Arias, L.1
Argos, P.2
-
10
-
-
0026210241
-
Analysis and modulation of protein stability
-
Fontana A. Analysis and modulation of protein stability. Curr. Opin. Biotech. 2:1991;551-560.
-
(1991)
Curr. Opin. Biotech.
, vol.2
, pp. 551-560
-
-
Fontana, A.1
-
11
-
-
0029932580
-
Analysis of protein conformational characteristics related to thermostability
-
Querol E., Perez-Pons J.A., Mozo-Villarias A. Analysis of protein conformational characteristics related to thermostability. Protein Eng. 9:1996;265-271.
-
(1996)
Protein Eng.
, vol.9
, pp. 265-271
-
-
Querol, E.1
Perez-Pons, J.A.2
Mozo-Villarias, A.3
-
12
-
-
0011186093
-
Protein thermal stability: Hydrogen bonds or internal packing?
-
Vogt G., Argos P. Protein thermal stability: hydrogen bonds or internal packing? Fold. Des. 2:1997;S40-S46.
-
(1997)
Fold. Des.
, vol.2
-
-
Vogt, G.1
Argos, P.2
-
13
-
-
0031580199
-
Protein thermal stability, hydrogen bonds, and ion pairs
-
Vogt G., Woell S., Argos P. Protein thermal stability, hydrogen bonds, and ion pairs. J. Mol. Biol. 269:1997;631-643.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 631-643
-
-
Vogt, G.1
Woell, S.2
Argos, P.3
-
14
-
-
0032773941
-
Role of structural and sequence information in the prediction of protein stability changes: Comparison between buried and partially buried mutations
-
Gromiha M.M., Oobatake M., Kono H., Uedaira H., Sarai A. Role of structural and sequence information in the prediction of protein stability changes: comparison between buried and partially buried mutations. Protein Eng. 12:1999;549-555.
-
(1999)
Protein Eng.
, vol.12
, pp. 549-555
-
-
Gromiha, M.M.1
Oobatake, M.2
Kono, H.3
Uedaira, H.4
Sarai, A.5
-
15
-
-
0032863182
-
Relationship between amino acid properties and protein stability: Buried mutations
-
Gromiha M.M., Oobatake M., Kono H., Uedaira H., Sarai A. Relationship between amino acid properties and protein stability: buried mutations. J. Protein Chem. 18:1999;565-578.
-
(1999)
J. Protein Chem.
, vol.18
, pp. 565-578
-
-
Gromiha, M.M.1
Oobatake, M.2
Kono, H.3
Uedaira, H.4
Sarai, A.5
-
19
-
-
0027251599
-
The effect of cations on the thermophilic character of alkaline phosphatase from Thermoactinomyces vulgaris
-
Iny D., Pinsky A., Malovani H. The effect of cations on the thermophilic character of alkaline phosphatase from Thermoactinomyces vulgaris. Biochem. Mol. Biol. Int. 29:1993;729-737.
-
(1993)
Biochem. Mol. Biol. Int.
, vol.29
, pp. 729-737
-
-
Iny, D.1
Pinsky, A.2
Malovani, H.3
-
20
-
-
0029099960
-
Engineering thermostability: Lessons from thermophilic proteins
-
Russell R.J.M., Taylor G.L. Engineering thermostability: lessons from thermophilic proteins. Curr. Opin. Biotech. 6:1995;370-374.
-
(1995)
Curr. Opin. Biotech.
, vol.6
, pp. 370-374
-
-
Russell, R.J.M.1
Taylor, G.L.2
-
21
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein F.C., Koetzle T.F., Williams G.J. et al. The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
-
22
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometric features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometric features. Biopolymers. 22:1983;2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
23
-
-
0018635651
-
The spatial distribution of physical, chemical, energetic and conformational properties of amino acid residues in globular proteins
-
Prabhakaran M., Ponnuswamy P.K. The spatial distribution of physical, chemical, energetic and conformational properties of amino acid residues in globular proteins. J. Theor. Biol. 80:1979;485-504.
-
(1979)
J. Theor. Biol.
, vol.80
, pp. 485-504
-
-
Prabhakaran, M.1
Ponnuswamy, P.K.2
-
24
-
-
0029922443
-
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins
-
Tomii K., Kanehisa M. Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins. Protein Eng. 9:1996;27-36.
-
(1996)
Protein Eng.
, vol.9
, pp. 27-36
-
-
Tomii, K.1
Kanehisa, M.2
-
25
-
-
0027377540
-
Relationship between amino acid properties and protein compressibility
-
Gromiha M.M., Ponnuswamy P.K. Relationship between amino acid properties and protein compressibility. J. Theor. Biol. 165:1993;87-100.
-
(1993)
J. Theor. Biol.
, vol.165
, pp. 87-100
-
-
Gromiha, M.M.1
Ponnuswamy, P.K.2
-
26
-
-
0026669807
-
Prediction of the activity and stability effects of site directed mutagenesis on a protein core
-
van Gunsteren W.F., Mark A.E. Prediction of the activity and stability effects of site directed mutagenesis on a protein core. J. Mol. Biol. 227:1992;389-395.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 389-395
-
-
Van Gunsteren, W.F.1
Mark, A.E.2
-
27
-
-
0001614001
-
Influence of medium and long range interactions in different structural classes of globular proteins
-
Gromiha M.M., Selvaraj S. Influence of medium and long range interactions in different structural classes of globular proteins. J. Biol. Phys. 23:1997;151-162.
-
(1997)
J. Biol. Phys.
, vol.23
, pp. 151-162
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
28
-
-
0031800191
-
Protein secondary structure prediction in different structural classes
-
Gromiha M.M., Selvaraj S. Protein secondary structure prediction in different structural classes. Protein Eng. 11:1998;249-251.
-
(1998)
Protein Eng.
, vol.11
, pp. 249-251
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
29
-
-
0032979568
-
Importance of long-range interactions in protein folding
-
Gromiha M.M., Selvaraj S. Importance of long-range interactions in protein folding. Biophys. Chem. 77:1999;49-68.
-
(1999)
Biophys. Chem.
, vol.77
, pp. 49-68
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
31
-
-
0025287103
-
Heat capacity of proteins. II. Partial molar heat capacity of the unfolded polypeptide chain of proteins: Protein unfolding effects
-
Privalov P.L., Makhatadze G.I. Heat capacity of proteins. II. Partial molar heat capacity of the unfolded polypeptide chain of proteins: protein unfolding effects. J. Mol. Biol. 213:1990;385-391.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 385-391
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
32
-
-
0026803109
-
Stabilization of Escherichia coli Ribonuclease HI by strategic replacement of amino acid residues with those from the thermophilic counterpart
-
Kimura S., Nakamura H., Hashimoto T., Oobatake M., Kanaya S. Stabilization of Escherichia coli Ribonuclease HI by strategic replacement of amino acid residues with those from the thermophilic counterpart. J. Biol. Chem. 267:1992;21535-21542.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 21535-21542
-
-
Kimura, S.1
Nakamura, H.2
Hashimoto, T.3
Oobatake, M.4
Kanaya, S.5
-
33
-
-
0027354210
-
Hydrophobic characteristics of folded proteins
-
Ponnuswamy P.K. Hydrophobic characteristics of folded proteins. Prog. Biophys. Mol. Biol. 59:1993;57-103.
-
(1993)
Prog. Biophys. Mol. Biol.
, vol.59
, pp. 57-103
-
-
Ponnuswamy, P.K.1
-
34
-
-
0024296532
-
Implications of protein folding. Additivity schemes for volumes and compressibilities
-
Iqbal M., Verrall R.E. Implications of protein folding. Additivity schemes for volumes and compressibilities. J. Biol. Chem. 263:1988;4159-4165.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 4159-4165
-
-
Iqbal, M.1
Verrall, R.E.2
-
35
-
-
0016708277
-
Amino acid properties and side-chain orientation in proteins: A cross correlation approach
-
Jones D.D. Amino acid properties and side-chain orientation in proteins: a cross correlation approach. J. Theor. Biol. 50:1975;167-183.
-
(1975)
J. Theor. Biol.
, vol.50
, pp. 167-183
-
-
Jones, D.D.1
-
36
-
-
0014349825
-
The characterization of amino acid sequences in proteins by statistical methods
-
Zimmerman J.M., Eliezer N., Simha R. The characterization of amino acid sequences in proteins by statistical methods. J. Theor. Biol. 21:1968;170-201.
-
(1968)
J. Theor. Biol.
, vol.21
, pp. 170-201
-
-
Zimmerman, J.M.1
Eliezer, N.2
Simha, R.3
-
37
-
-
0004023135
-
-
The Chemical Rubber Co., Cleveland, Ohio
-
H.A. Sober, Handbook of Biochemistry, Selected Data for Molecular Biology, 2nd ed., The Chemical Rubber Co., Cleveland, Ohio, 1970.
-
(1970)
Handbook of Biochemistry, Selected Data for Molecular Biology, 2nd Ed.
-
-
Sober, H.A.1
-
39
-
-
0017689283
-
An analysis of non-bonded energy of proteins
-
Oobatake M., Ooi T. An analysis of non-bonded energy of proteins. J. Theor. Biol. 67:1977;567-584.
-
(1977)
J. Theor. Biol.
, vol.67
, pp. 567-584
-
-
Oobatake, M.1
Ooi, T.2
-
40
-
-
0018110116
-
Prediction of the secondary structure of proteins from their amino acid sequence
-
Chou P.Y., Fasman G.D. Prediction of the secondary structure of proteins from their amino acid sequence. Adv. Enzymol. 47:1978;45-148.
-
(1978)
Adv. Enzymol.
, vol.47
, pp. 45-148
-
-
Chou, P.Y.1
Fasman, G.D.2
-
41
-
-
0017876485
-
Packing of alpha-helices: Geometrical constraints and contact areas
-
Richmond T.J., Richards F.M. Packing of alpha-helices: geometrical constraints and contact areas. J. Mol. Biol. 119:1978;537-555.
-
(1978)
J. Mol. Biol.
, vol.119
, pp. 537-555
-
-
Richmond, T.J.1
Richards, F.M.2
-
43
-
-
0017187836
-
The nature of the accessible and buried surfaces in proteins
-
Chothia C. The nature of the accessible and buried surfaces in proteins. J. Mol. Biol. 105:1976;1-12.
-
(1976)
J. Mol. Biol.
, vol.105
, pp. 1-12
-
-
Chothia, C.1
-
44
-
-
0022412192
-
Hydrophobicity of amino acid residues in globular proteins
-
Rose G.D., Geselowitz A.R., Lesser G.J., Lee R.H., Zehfus M.H. Hydrophobicity of amino acid residues in globular proteins. Science. 229:1985;834-838.
-
(1985)
Science
, vol.229
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
Lee, R.H.4
Zehfus, M.H.5
-
45
-
-
0018077908
-
Hydrophobic character of amino acid residues in globular proteins
-
Manavalan P., Ponnuswamy P.K. Hydrophobic character of amino acid residues in globular proteins. Nature. 275:1978;673-674.
-
(1978)
Nature
, vol.275
, pp. 673-674
-
-
Manavalan, P.1
Ponnuswamy, P.K.2
-
46
-
-
0027382240
-
Prediction of transmembrane helices from hydrophobic characteristics of proteins
-
Ponnuswamy P.K., Gromiha M.M. Prediction of transmembrane helices from hydrophobic characteristics of proteins. Int. J. Pept. Protein Res. 42:1993;326-341.
-
(1993)
Int. J. Pept. Protein Res.
, vol.42
, pp. 326-341
-
-
Ponnuswamy, P.K.1
Gromiha, M.M.2
|