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Volumn 68, Issue 6 1, 2003, Pages 611091-6110922

Network rigidity at finite temperature: Relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMERS; COMPUTER SIMULATION; CONFORMATIONS; CONSTRAINT THEORY; DEGREES OF FREEDOM (MECHANICS); ENTROPY; GRAPH THEORY; LARGE SCALE SYSTEMS; MONTE CARLO METHODS; PARTICLES (PARTICULATE MATTER); THERMODYNAMICS;

EID: 1542285840     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (42)

References (53)
  • 27
    • 33645049995 scopus 로고    scopus 로고
    • note
    • The entropy loss from a redundant constraint is expected to be a small fraction of what would occur if the constraint was independent. Accounting for this second-order effect is possible at the expense of losing simplicity.
  • 28
    • 33645051341 scopus 로고    scopus 로고
    • note
    • The DCM explicitly neglects relaxation within constraints. Relaxation in structure can be described by incorporating more geometrical bins at the expense of losing simplicity.
  • 33
    • 33645078273 scopus 로고    scopus 로고
    • note
    • The propagation rule was applied from left to right and right to left on 200 000 chains with length of 100 000 as well as millions of chains of lengths ranging from 10 to 1000 all having random conformations. These results were compared to exact calculation using the pebble game per framework. Agreement between all three results was always obtained.
  • 34
    • 33645075324 scopus 로고    scopus 로고
    • note
    • s and the special matrices {S, R, Q} required expanding the dimension of the direct product space. The dim(T) referes to the subspace that excludes the s state.
  • 35
    • 33645071819 scopus 로고    scopus 로고
    • Donald J. Jacobs and G. G. Wood (unpublished)
    • Donald J. Jacobs and G. G. Wood (unpublished).
  • 39
    • 33645056070 scopus 로고    scopus 로고
    • note
    • The objective of finding an optimal set of parameters with available data in the literature is outside the scope of this work. The subject of obtaining an accurate DCM parametrization is deferred to future work.
  • 47
    • 33645091372 scopus 로고    scopus 로고
    • note
    • A third parameter called u in the LR model is arbitrarily set to unity, which is analogous to the arbitrary choices made in fixing some DCM parameters.
  • 53
    • 33645048066 scopus 로고    scopus 로고
    • D. Huynh, S. Dallakyan, and D. J. Jacobs (unpublished)
    • D. Huynh, S. Dallakyan, and D. J. Jacobs (unpublished).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.