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Volumn 7, Issue 5, 2012, Pages

Extensive translatome remodeling during ER stress response in mammalian cells

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR 4; ADENOSINE TRIPHOSPHATASE; AMINO ACID TRANSFER RNA LIGASE; BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; BETA ACTIN; EARLY GROWTH RESPONSE FACTOR 1; EARLY GROWTH RESPONSE FACTOR 2; FERRITIN; MESSENGER RNA; POLYDEOXYRIBONUCLEOTIDE SYNTHASE;

EID: 84860539101     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0035915     Document Type: Article
Times cited : (27)

References (83)
  • 1
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • Maniatis T, Reed R, (2002) An extensive network of coupling among gene expression machines. Nature 416: 499-506.
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 2
    • 60149103676 scopus 로고    scopus 로고
    • The centrality of RNA
    • Sharp PA, (2009) The centrality of RNA. Cell 136: 577-580.
    • (2009) Cell , vol.136 , pp. 577-580
    • Sharp, P.A.1
  • 4
    • 79956322553 scopus 로고    scopus 로고
    • Global quantification of mammalian gene expression control
    • Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342.
    • (2011) Nature , vol.473 , pp. 337-342
    • Schwanhausser, B.1    Busse, D.2    Li, N.3    Dittmar, G.4    Schuchhardt, J.5
  • 5
    • 0022512237 scopus 로고
    • Multiple upstream AUG codons mediate translational control of GCN4
    • Mueller PP, Hinnebusch AG, (1986) Multiple upstream AUG codons mediate translational control of GCN4. Cell 45: 201-207.
    • (1986) Cell , vol.45 , pp. 201-207
    • Mueller, P.P.1    Hinnebusch, A.G.2
  • 6
    • 0023612118 scopus 로고
    • Identification of the iron-responsive element for the translational regulation of human ferritin mRNA
    • Hentze MW, Caughman SW, Rouault TA, Barriocanal JG, Dancis A, et al. (1987) Identification of the iron-responsive element for the translational regulation of human ferritin mRNA. Science 238: 1570-1573.
    • (1987) Science , vol.238 , pp. 1570-1573
    • Hentze, M.W.1    Caughman, S.W.2    Rouault, T.A.3    Barriocanal, J.G.4    Dancis, A.5
  • 7
    • 0037154965 scopus 로고    scopus 로고
    • Gene-specific regulation by general translation factors
    • Dever TE, (2002) Gene-specific regulation by general translation factors. Cell 108: 545-556.
    • (2002) Cell , vol.108 , pp. 545-556
    • Dever, T.E.1
  • 8
    • 5044229348 scopus 로고    scopus 로고
    • Molecular mechanisms of translational control
    • Gebauer F, Hentze MW, (2004) Molecular mechanisms of translational control. Nat Rev Mol Cell Biol 5: 827-835.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 827-835
    • Gebauer, F.1    Hentze, M.W.2
  • 9
    • 0026556814 scopus 로고
    • Phosphorylation of initiation factor 2 alpha by protein kinase GCN2 mediates gene-specific translational control of GCN4 in yeast
    • Dever TE, Feng L, Wek RC, Cigan AM, Donahue TF, et al. (1992) Phosphorylation of initiation factor 2 alpha by protein kinase GCN2 mediates gene-specific translational control of GCN4 in yeast. Cell 68: 585-596.
    • (1992) Cell , vol.68 , pp. 585-596
    • Dever, T.E.1    Feng, L.2    Wek, R.C.3    Cigan, A.M.4    Donahue, T.F.5
  • 10
    • 78649375395 scopus 로고    scopus 로고
    • Translational regulation of gene expression during conditions of cell stress
    • Spriggs KA, Bushell M, Willis AE, (2010) Translational regulation of gene expression during conditions of cell stress. Mol Cell 40: 228-237.
    • (2010) Mol Cell , vol.40 , pp. 228-237
    • Spriggs, K.A.1    Bushell, M.2    Willis, A.E.3
  • 11
    • 77956556496 scopus 로고    scopus 로고
    • Control of translation initiation through integration of signals generated by hormones, nutrients, and exercise
    • Kimball SR, Jefferson LS, (2010) Control of translation initiation through integration of signals generated by hormones, nutrients, and exercise. J Biol Chem 285: 29027-29032.
    • (2010) J Biol Chem , vol.285 , pp. 29027-29032
    • Kimball, S.R.1    Jefferson, L.S.2
  • 12
    • 0242362748 scopus 로고    scopus 로고
    • Ribosomes rule: translation, not transcription, is the primary target of two major intercellular signaling pathways
    • Lasko P, (2003) Ribosomes rule: translation, not transcription, is the primary target of two major intercellular signaling pathways. Dev Cell 5: 671-672.
    • (2003) Dev Cell , vol.5 , pp. 671-672
    • Lasko, P.1
  • 13
    • 0033634654 scopus 로고    scopus 로고
    • Regulated translation initiation controls stress-induced gene expression in mammalian cells
    • Harding HP, Novoa I, Zhang Y, Zeng H, Wek R, et al. (2000) Regulated translation initiation controls stress-induced gene expression in mammalian cells. Mol Cell 6: 1099-1108.
    • (2000) Mol Cell , vol.6 , pp. 1099-1108
    • Harding, H.P.1    Novoa, I.2    Zhang, Y.3    Zeng, H.4    Wek, R.5
  • 14
    • 0032834055 scopus 로고    scopus 로고
    • eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation
    • Gingras AC, Raught B, Sonenberg N, (1999) eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation. Annu Rev Biochem 68: 913-963.
    • (1999) Annu Rev Biochem , vol.68 , pp. 913-963
    • Gingras, A.C.1    Raught, B.2    Sonenberg, N.3
  • 15
    • 60149091189 scopus 로고    scopus 로고
    • Regulation of translation initiation in eukaryotes: mechanisms and biological targets
    • Sonenberg N, Hinnebusch AG, (2009) Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136: 731-745.
    • (2009) Cell , vol.136 , pp. 731-745
    • Sonenberg, N.1    Hinnebusch, A.G.2
  • 16
    • 0028034233 scopus 로고
    • Insulin-dependent stimulation of protein synthesis by phosphorylation of a regulator of 5′-cap function
    • Pause A, Belsham GJ, Gingras AC, Donze O, Lin TA, et al. (1994) Insulin-dependent stimulation of protein synthesis by phosphorylation of a regulator of 5′-cap function. Nature 371: 762-767.
    • (1994) Nature , vol.371 , pp. 762-767
    • Pause, A.1    Belsham, G.J.2    Gingras, A.C.3    Donze, O.4    Lin, T.A.5
  • 17
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
    • (2008) Nat Rev Genet , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 19
    • 72949115517 scopus 로고    scopus 로고
    • Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
    • Hendrickson DG, Hogan DJ, McCullough HL, Myers JW, Herschlag D, et al. (2009) Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol 7: e1000238.
    • (2009) PLoS Biol , vol.7
    • Hendrickson, D.G.1    Hogan, D.J.2    McCullough, H.L.3    Myers, J.W.4    Herschlag, D.5
  • 20
    • 0025832056 scopus 로고
    • Translational control in mammalian cells
    • Hershey JW, (1991) Translational control in mammalian cells. Annu Rev Biochem 60: 717-755.
    • (1991) Annu Rev Biochem , vol.60 , pp. 717-755
    • Hershey, J.W.1
  • 21
    • 75149196287 scopus 로고    scopus 로고
    • The mechanism of eukaryotic translation initiation and principles of its regulation
    • Jackson RJ, Hellen CU, Pestova TV, (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat Rev Mol Cell Biol 11: 113-127.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 113-127
    • Jackson, R.J.1    Hellen, C.U.2    Pestova, T.V.3
  • 22
    • 0034711012 scopus 로고    scopus 로고
    • Phosphorylation of serine 51 in initiation factor 2 alpha (eIF2 alpha) promotes complex formation between eIF2 alpha(P) and eIF2B and causes inhibition in the guanine nucleotide exchange activity of eIF2B
    • Sudhakar A, Ramachandran A, Ghosh S, Hasnain SE, Kaufman RJ, et al. (2000) Phosphorylation of serine 51 in initiation factor 2 alpha (eIF2 alpha) promotes complex formation between eIF2 alpha(P) and eIF2B and causes inhibition in the guanine nucleotide exchange activity of eIF2B. Biochemistry 39: 12929-12938.
    • (2000) Biochemistry , vol.39 , pp. 12929-12938
    • Sudhakar, A.1    Ramachandran, A.2    Ghosh, S.3    Hasnain, S.E.4    Kaufman, R.J.5
  • 23
    • 0037416211 scopus 로고    scopus 로고
    • Stress-induced gene expression requires programmed recovery from translational repression
    • Novoa I, Zhang Y, Zeng H, Jungreis R, Harding HP, et al. (2003) Stress-induced gene expression requires programmed recovery from translational repression. Embo J 22: 1180-1187.
    • (2003) Embo J , vol.22 , pp. 1180-1187
    • Novoa, I.1    Zhang, Y.2    Zeng, H.3    Jungreis, R.4    Harding, H.P.5
  • 24
    • 0034973982 scopus 로고    scopus 로고
    • Translational control is required for the unfolded protein response and in vivo glucose homeostasis
    • Scheuner D, Song B, McEwen E, Liu C, Laybutt R, et al. (2001) Translational control is required for the unfolded protein response and in vivo glucose homeostasis. Mol Cell 7: 1165-1176.
    • (2001) Mol Cell , vol.7 , pp. 1165-1176
    • Scheuner, D.1    Song, B.2    McEwen, E.3    Liu, C.4    Laybutt, R.5
  • 25
    • 33644779804 scopus 로고    scopus 로고
    • Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48 S translation initiation complex
    • Pisarev AV, Kolupaeva VG, Pisareva VP, Merrick WC, Hellen CU, et al. (2006) Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48 S translation initiation complex. Genes Dev 20: 624-636.
    • (2006) Genes Dev , vol.20 , pp. 624-636
    • Pisarev, A.V.1    Kolupaeva, V.G.2    Pisareva, V.P.3    Merrick, W.C.4    Hellen, C.U.5
  • 26
    • 27144555357 scopus 로고    scopus 로고
    • Regulation of translation via mRNA structure in prokaryotes and eukaryotes
    • Kozak M, (2005) Regulation of translation via mRNA structure in prokaryotes and eukaryotes. Gene 361: 13-37.
    • (2005) Gene , vol.361 , pp. 13-37
    • Kozak, M.1
  • 27
    • 0031010944 scopus 로고    scopus 로고
    • Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6
    • Kozak M, (1997) Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6. Embo J 16: 2482-2492.
    • (1997) Embo J , vol.16 , pp. 2482-2492
    • Kozak, M.1
  • 28
    • 0025107694 scopus 로고
    • Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes
    • Kozak M, (1990) Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Proc Natl Acad Sci U S A 87: 8301-8305.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 8301-8305
    • Kozak, M.1
  • 29
    • 0022552131 scopus 로고
    • Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
    • Kozak M, (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44: 283-292.
    • (1986) Cell , vol.44 , pp. 283-292
    • Kozak, M.1
  • 30
    • 12344281782 scopus 로고    scopus 로고
    • The implications of structured 5′ untranslated regions on translation and disease
    • Pickering BM, Willis AE, (2005) The implications of structured 5′ untranslated regions on translation and disease. Semin Cell Dev Biol 16: 39-47.
    • (2005) Semin Cell Dev Biol , vol.16 , pp. 39-47
    • Pickering, B.M.1    Willis, A.E.2
  • 31
    • 0023720048 scopus 로고
    • Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA
    • Pelletier J, Sonenberg N, (1988) Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA. Nature 334: 320-325.
    • (1988) Nature , vol.334 , pp. 320-325
    • Pelletier, J.1    Sonenberg, N.2
  • 32
    • 28844476749 scopus 로고    scopus 로고
    • Alternative mechanisms of initiating translation of mammalian mRNAs
    • Jackson RJ, (2005) Alternative mechanisms of initiating translation of mammalian mRNAs. Biochem Soc Trans 33: 1231-1241.
    • (2005) Biochem Soc Trans , vol.33 , pp. 1231-1241
    • Jackson, R.J.1
  • 33
    • 3843117589 scopus 로고    scopus 로고
    • Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells
    • Vattem KM, Wek RC, (2004) Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells. Proc Natl Acad Sci U S A 101: 11269-11274.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11269-11274
    • Vattem, K.M.1    Wek, R.C.2
  • 34
    • 5444264022 scopus 로고    scopus 로고
    • Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response
    • Lu PD, Harding HP, Ron D, (2004) Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response. J Cell Biol 167: 27-33.
    • (2004) J Cell Biol , vol.167 , pp. 27-33
    • Lu, P.D.1    Harding, H.P.2    Ron, D.3
  • 35
    • 41449095062 scopus 로고    scopus 로고
    • Phosphorylation of eIF2 directs ATF5 translational control in response to diverse stress conditions
    • Zhou D, Palam LR, Jiang L, Narasimhan J, Staschke KA, et al. (2008) Phosphorylation of eIF2 directs ATF5 translational control in response to diverse stress conditions. J Biol Chem 283: 7064-7073.
    • (2008) J Biol Chem , vol.283 , pp. 7064-7073
    • Zhou, D.1    Palam, L.R.2    Jiang, L.3    Narasimhan, J.4    Staschke, K.A.5
  • 36
    • 65449141379 scopus 로고    scopus 로고
    • An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation
    • Lee YY, Cevallos RC, Jan E, (2009) An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation. J Biol Chem 284: 6661-6673.
    • (2009) J Biol Chem , vol.284 , pp. 6661-6673
    • Lee, Y.Y.1    Cevallos, R.C.2    Jan, E.3
  • 37
    • 79953224498 scopus 로고    scopus 로고
    • Phosphorylation of eIF2 facilitates ribosomal bypass of an inhibitory upstream ORF to enhance CHOP translation
    • Palam LR, Baird TD, Wek RC, (2011) Phosphorylation of eIF2 facilitates ribosomal bypass of an inhibitory upstream ORF to enhance CHOP translation. J Biol Chem.
    • (2011) J Biol Chem
    • Palam, L.R.1    Baird, T.D.2    Wek, R.C.3
  • 38
    • 41449112857 scopus 로고    scopus 로고
    • Stress-induced translation of ATF5 mRNA is regulated by the 5′-untranslated region
    • Watatani Y, Ichikawa K, Nakanishi N, Fujimoto M, Takeda H, et al. (2008) Stress-induced translation of ATF5 mRNA is regulated by the 5′-untranslated region. J Biol Chem 283: 2543-2553.
    • (2008) J Biol Chem , vol.283 , pp. 2543-2553
    • Watatani, Y.1    Ichikawa, K.2    Nakanishi, N.3    Fujimoto, M.4    Takeda, H.5
  • 39
    • 41449117605 scopus 로고    scopus 로고
    • uORFs, reinitiation and alternative translation start sites in human mRNAs
    • Kochetov AV, Ahmad S, Ivanisenko V, Volkova OA, Kolchanov NA, et al. (2008) uORFs, reinitiation and alternative translation start sites in human mRNAs. FEBS Lett 582: 1293-1297.
    • (2008) FEBS Lett , vol.582 , pp. 1293-1297
    • Kochetov, A.V.1    Ahmad, S.2    Ivanisenko, V.3    Volkova, O.A.4    Kolchanov, N.A.5
  • 40
    • 66149118241 scopus 로고    scopus 로고
    • Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
    • Calvo SE, Pagliarini DJ, Mootha VK, (2009) Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc Natl Acad Sci U S A 106: 7507-7512.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 7507-7512
    • Calvo, S.E.1    Pagliarini, D.J.2    Mootha, V.K.3
  • 41
    • 34250735674 scopus 로고    scopus 로고
    • RNA regulons: coordination of post-transcriptional events
    • Keene JD, (2007) RNA regulons: coordination of post-transcriptional events. Nat Rev Genet 8: 533-543.
    • (2007) Nat Rev Genet , vol.8 , pp. 533-543
    • Keene, J.D.1
  • 42
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS, (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 43
    • 65249176527 scopus 로고    scopus 로고
    • Stress-Dependent Coordination of Transcriptome and Translatome in Yeast
    • Halbeisen RE, Gerber AP, (2009) Stress-Dependent Coordination of Transcriptome and Translatome in Yeast. PLoS Biol 7: e105.
    • (2009) PLoS Biol , vol.7
    • Halbeisen, R.E.1    Gerber, A.P.2
  • 44
    • 0037388094 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
    • Arava Y, Wang Y, Storey JD, Liu CL, Brown PO, et al. (2003) Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 100: 3889-3894.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 3889-3894
    • Arava, Y.1    Wang, Y.2    Storey, J.D.3    Liu, C.L.4    Brown, P.O.5
  • 45
    • 33646731568 scopus 로고    scopus 로고
    • Expression profiling reveals meiotic male germ cell mRNAs that are translationally up- and down-regulated
    • Iguchi N, Tobias JW, Hecht NB, (2006) Expression profiling reveals meiotic male germ cell mRNAs that are translationally up- and down-regulated. Proc Natl Acad Sci U S A 103: 7712-7717.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 7712-7717
    • Iguchi, N.1    Tobias, J.W.2    Hecht, N.B.3
  • 46
    • 34250812108 scopus 로고    scopus 로고
    • Identification of mRNAs that continue to associate with polysomes during hypoxia
    • Thomas JD, Johannes GJ, (2007) Identification of mRNAs that continue to associate with polysomes during hypoxia. Rna 13: 1116-1131.
    • (2007) Rna , vol.13 , pp. 1116-1131
    • Thomas, J.D.1    Johannes, G.J.2
  • 47
    • 32944460143 scopus 로고    scopus 로고
    • Messenger RNAs under differential translational control in Ki-ras-transformed cells
    • Spence J, Duggan BM, Eckhardt C, McClelland M, Mercola D, (2006) Messenger RNAs under differential translational control in Ki-ras-transformed cells. Mol Cancer Res 4: 47-60.
    • (2006) Mol Cancer Res , vol.4 , pp. 47-60
    • Spence, J.1    Duggan, B.M.2    Eckhardt, C.3    McClelland, M.4    Mercola, D.5
  • 48
    • 68849087185 scopus 로고    scopus 로고
    • eIF2alpha kinases GCN2 and PERK modulate transcription and translation of distinct sets of mRNAs in mouse liver
    • Dang Do AN, Kimball SR, Cavener DR, Jefferson LS, (2009) eIF2alpha kinases GCN2 and PERK modulate transcription and translation of distinct sets of mRNAs in mouse liver. Physiol Genomics 38: 328-341.
    • (2009) Physiol Genomics , vol.38 , pp. 328-341
    • Dang Do, A.N.1    Kimball, S.R.2    Cavener, D.R.3    Jefferson, L.S.4
  • 49
    • 2342518844 scopus 로고    scopus 로고
    • Diverse and specific gene expression responses to stresses in cultured human cells
    • Murray JI, Whitfield ML, Trinklein ND, Myers RM, Brown PO, et al. (2004) Diverse and specific gene expression responses to stresses in cultured human cells. Mol Biol Cell 15: 2361-2374.
    • (2004) Mol Biol Cell , vol.15 , pp. 2361-2374
    • Murray, J.I.1    Whitfield, M.L.2    Trinklein, N.D.3    Myers, R.M.4    Brown, P.O.5
  • 50
    • 0027530567 scopus 로고
    • Inhibition of protein synthesis and early protein processing by thapsigargin in cultured cells
    • Wong WL, Brostrom MA, Kuznetsov G, Gmitter-Yellen D, Brostrom CO, (1993) Inhibition of protein synthesis and early protein processing by thapsigargin in cultured cells. Biochem J 289 (Pt 1): 71-79.
    • (1993) Biochem J , vol.289 , Issue.Pt 1 , pp. 71-79
    • Wong, W.L.1    Brostrom, M.A.2    Kuznetsov, G.3    Gmitter-Yellen, D.4    Brostrom, C.O.5
  • 51
    • 2342639670 scopus 로고    scopus 로고
    • Signaling control of mRNA translation in cancer pathogenesis
    • Holland EC, Sonenberg N, Pandolfi PP, Thomas G, (2004) Signaling control of mRNA translation in cancer pathogenesis. Oncogene 23: 3138-3144.
    • (2004) Oncogene , vol.23 , pp. 3138-3144
    • Holland, E.C.1    Sonenberg, N.2    Pandolfi, P.P.3    Thomas, G.4
  • 52
    • 1642553650 scopus 로고    scopus 로고
    • Defective translational control facilitates vesicular stomatitis virus oncolysis
    • Balachandran S, Barber GN, (2004) Defective translational control facilitates vesicular stomatitis virus oncolysis. Cancer Cell 5: 51-65.
    • (2004) Cancer Cell , vol.5 , pp. 51-65
    • Balachandran, S.1    Barber, G.N.2
  • 53
    • 0242361561 scopus 로고    scopus 로고
    • Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes
    • Rajasekhar VK, Viale A, Socci ND, Wiedmann M, Hu X, et al. (2003) Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes. Mol Cell 12: 889-901.
    • (2003) Mol Cell , vol.12 , pp. 889-901
    • Rajasekhar, V.K.1    Viale, A.2    Socci, N.D.3    Wiedmann, M.4    Hu, X.5
  • 54
    • 0036591973 scopus 로고    scopus 로고
    • BiP is feed-back regulated by control of protein translation efficiency
    • Gulow K, Bienert D, Haas IG, (2002) BiP is feed-back regulated by control of protein translation efficiency. J Cell Sci 115: 2443-2452.
    • (2002) J Cell Sci , vol.115 , pp. 2443-2452
    • Gulow, K.1    Bienert, D.2    Haas, I.G.3
  • 55
    • 0033539681 scopus 로고    scopus 로고
    • Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray
    • Johannes G, Carter MS, Eisen MB, Brown PO, Sarnow P, (1999) Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray. Proc Natl Acad Sci U S A 96: 13118-13123.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 13118-13123
    • Johannes, G.1    Carter, M.S.2    Eisen, M.B.3    Brown, P.O.4    Sarnow, P.5
  • 56
    • 0032160381 scopus 로고    scopus 로고
    • IRP-1 binding to ferritin mRNA prevents the recruitment of the small ribosomal subunit by the cap-binding complex eIF4F
    • Muckenthaler M, Gray NK, Hentze MW, (1998) IRP-1 binding to ferritin mRNA prevents the recruitment of the small ribosomal subunit by the cap-binding complex eIF4F. Mol Cell 2: 383-388.
    • (1998) Mol Cell , vol.2 , pp. 383-388
    • Muckenthaler, M.1    Gray, N.K.2    Hentze, M.W.3
  • 57
    • 48449104742 scopus 로고    scopus 로고
    • Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
    • Al-Shahrour F, Carbonell J, Minguez P, Goetz S, Conesa A, et al. (2008) Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res 36: W341-346.
    • (2008) Nucleic Acids Res , vol.36
    • Al-Shahrour, F.1    Carbonell, J.2    Minguez, P.3    Goetz, S.4    Conesa, A.5
  • 58
    • 35548935529 scopus 로고    scopus 로고
    • AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
    • Kochetov AV, Palyanov A, Titov II, Grigorovich D, Sarai A, et al. (2007) AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinformatics 8: 318.
    • (2007) BMC Bioinformatics , vol.8 , pp. 318
    • Kochetov, A.V.1    Palyanov, A.2    Titov, I.I.3    Grigorovich, D.4    Sarai, A.5
  • 59
    • 0026723117 scopus 로고
    • mRNAs containing extensive secondary structure in their 5′ non-coding region translate efficiently in cells overexpressing initiation factor eIF-4E
    • Koromilas AE, Lazaris-Karatzas A, Sonenberg N, (1992) mRNAs containing extensive secondary structure in their 5′ non-coding region translate efficiently in cells overexpressing initiation factor eIF-4E. Embo J 11: 4153-4158.
    • (1992) Embo J , vol.11 , pp. 4153-4158
    • Koromilas, A.E.1    Lazaris-Karatzas, A.2    Sonenberg, N.3
  • 60
    • 77956306662 scopus 로고    scopus 로고
    • Genome-wide measurement of RNA secondary structure in yeast
    • Kertesz M, Wan Y, Mazor E, Rinn JL, Nutter RC, et al. (2010) Genome-wide measurement of RNA secondary structure in yeast. Nature 467: 103-107.
    • (2010) Nature , vol.467 , pp. 103-107
    • Kertesz, M.1    Wan, Y.2    Mazor, E.3    Rinn, J.L.4    Nutter, R.C.5
  • 61
    • 77958493102 scopus 로고    scopus 로고
    • The mRNA landscape at yeast translation initiation sites
    • Robbins-Pianka A, Rice MD, Weir MP, (2010) The mRNA landscape at yeast translation initiation sites. Bioinformatics 26: 2651-2655.
    • (2010) Bioinformatics , vol.26 , pp. 2651-2655
    • Robbins-Pianka, A.1    Rice, M.D.2    Weir, M.P.3
  • 62
    • 29944433224 scopus 로고    scopus 로고
    • Translational resistance of late alphavirus mRNA to eIF2alpha phosphorylation: a strategy to overcome the antiviral effect of protein kinase PKR
    • Ventoso I, Sanz MA, Molina S, Berlanga JJ, Carrasco L, et al. (2006) Translational resistance of late alphavirus mRNA to eIF2alpha phosphorylation: a strategy to overcome the antiviral effect of protein kinase PKR. Genes Dev 20: 87-100.
    • (2006) Genes Dev , vol.20 , pp. 87-100
    • Ventoso, I.1    Sanz, M.A.2    Molina, S.3    Berlanga, J.J.4    Carrasco, L.5
  • 63
    • 0035947778 scopus 로고    scopus 로고
    • Feedback inhibition of the unfolded protein response by GADD34-mediated dephosphorylation of eIF2alpha
    • Novoa I, Zeng H, Harding HP, Ron D, (2001) Feedback inhibition of the unfolded protein response by GADD34-mediated dephosphorylation of eIF2alpha. J Cell Biol 153: 1011-1022.
    • (2001) J Cell Biol , vol.153 , pp. 1011-1022
    • Novoa, I.1    Zeng, H.2    Harding, H.P.3    Ron, D.4
  • 65
    • 34548459898 scopus 로고    scopus 로고
    • Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling
    • Wu L, Hwang SI, Rezaul K, Lu LJ, Mayya V, et al. (2007) Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling. Mol Cell Proteomics 6: 1343-1353.
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1343-1353
    • Wu, L.1    Hwang, S.I.2    Rezaul, K.3    Lu, L.J.4    Mayya, V.5
  • 66
    • 2442553728 scopus 로고    scopus 로고
    • Towards a standardized human proteome database: quantitative proteome profiling of living cells
    • Traxler E, Bayer E, Stockl J, Mohr T, Lenz C, et al. (2004) Towards a standardized human proteome database: quantitative proteome profiling of living cells. Proteomics 4: 1314-1323.
    • (2004) Proteomics , vol.4 , pp. 1314-1323
    • Traxler, E.1    Bayer, E.2    Stockl, J.3    Mohr, T.4    Lenz, C.5
  • 67
    • 33745968529 scopus 로고    scopus 로고
    • Knowledge-based proteome profiling: considering identified proteins to evaluate separation efficiency by 2-D PAGE
    • Gundacker N, Bayer E, Traxler E, Zwickl H, Kubicek M, et al. (2006) Knowledge-based proteome profiling: considering identified proteins to evaluate separation efficiency by 2-D PAGE. Electrophoresis 27: 2712-2721.
    • (2006) Electrophoresis , vol.27 , pp. 2712-2721
    • Gundacker, N.1    Bayer, E.2    Traxler, E.3    Zwickl, H.4    Kubicek, M.5
  • 68
    • 0345602742 scopus 로고    scopus 로고
    • Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
    • Preiss T, Baron-Benhamou J, Ansorge W, Hentze MW, (2003) Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat Struct Biol 10: 1039-1047.
    • (2003) Nat Struct Biol , vol.10 , pp. 1039-1047
    • Preiss, T.1    Baron-Benhamou, J.2    Ansorge, W.3    Hentze, M.W.4
  • 69
    • 0037353039 scopus 로고    scopus 로고
    • An integrated stress response regulates amino acid metabolism and resistance to oxidative stress
    • Harding HP, Zhang Y, Zeng H, Novoa I, Lu PD, et al. (2003) An integrated stress response regulates amino acid metabolism and resistance to oxidative stress. Mol Cell 11: 619-633.
    • (2003) Mol Cell , vol.11 , pp. 619-633
    • Harding, H.P.1    Zhang, Y.2    Zeng, H.3    Novoa, I.4    Lu, P.D.5
  • 70
    • 0030041884 scopus 로고    scopus 로고
    • Translation initiation of ornithine decarboxylase and nucleocytoplasmic transport of cyclin D1 mRNA are increased in cells overexpressing eukaryotic initiation factor 4E
    • Rousseau D, Kaspar R, Rosenwald I, Gehrke L, Sonenberg N, (1996) Translation initiation of ornithine decarboxylase and nucleocytoplasmic transport of cyclin D1 mRNA are increased in cells overexpressing eukaryotic initiation factor 4E. Proc Natl Acad Sci U S A 93: 1065-1070.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 1065-1070
    • Rousseau, D.1    Kaspar, R.2    Rosenwald, I.3    Gehrke, L.4    Sonenberg, N.5
  • 71
    • 76049108205 scopus 로고    scopus 로고
    • The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis
    • Parsyan A, Shahbazian D, Martineau Y, Petroulakis E, Alain T, et al. (2009) The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis. Proc Natl Acad Sci U S A 106: 22217-22222.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 22217-22222
    • Parsyan, A.1    Shahbazian, D.2    Martineau, Y.3    Petroulakis, E.4    Alain, T.5
  • 74
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi SP, Rochon Y, Franza BR, Aebersold R, (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730.
    • (1999) Mol Cell Biol , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 75
    • 34250899722 scopus 로고    scopus 로고
    • Signal integration in the endoplasmic reticulum unfolded protein response
    • Ron D, Walter P, (2007) Signal integration in the endoplasmic reticulum unfolded protein response. Nat Rev Mol Cell Biol 8: 519-529.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 519-529
    • Ron, D.1    Walter, P.2
  • 76
    • 77649299348 scopus 로고    scopus 로고
    • An atlas of combinatorial transcriptional regulation in mouse and man
    • Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, et al. (2010) An atlas of combinatorial transcriptional regulation in mouse and man. Cell 140: 744-752.
    • (2010) Cell , vol.140 , pp. 744-752
    • Ravasi, T.1    Suzuki, H.2    Cannistraci, C.V.3    Katayama, S.4    Bajic, V.B.5
  • 77
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of Mammalian proteomes
    • Ingolia NT, Lareau LF, Weissman JS, (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of Mammalian proteomes. Cell 147: 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 79
    • 0031790633 scopus 로고    scopus 로고
    • Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites
    • Johannes G, Sarnow P, (1998) Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites. RNA 4: 1500-1513.
    • (1998) RNA , vol.4 , pp. 1500-1513
    • Johannes, G.1    Sarnow, P.2
  • 80
    • 0037166289 scopus 로고    scopus 로고
    • Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha
    • Fernandez J, Yaman I, Sarnow P, Snider MD, Hatzoglou M, (2002) Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha. J Biol Chem 277: 19198-19205.
    • (2002) J Biol Chem , vol.277 , pp. 19198-19205
    • Fernandez, J.1    Yaman, I.2    Sarnow, P.3    Snider, M.D.4    Hatzoglou, M.5
  • 81
    • 0034212658 scopus 로고    scopus 로고
    • The chicken c-Jun 5′ untranslated region directs translation by internal initiation
    • Sehgal A, Briggs J, Rinehart-Kim J, Basso J, Bos TJ, (2000) The chicken c-Jun 5′ untranslated region directs translation by internal initiation. Oncogene 19: 2836-2845.
    • (2000) Oncogene , vol.19 , pp. 2836-2845
    • Sehgal, A.1    Briggs, J.2    Rinehart-Kim, J.3    Basso, J.4    Bos, T.J.5
  • 83
    • 42449126726 scopus 로고    scopus 로고
    • Splicing mediates the activity of four putative cellular internal ribosome entry sites
    • Baranick BT, Lemp NA, Nagashima J, Hiraoka K, Kasahara N, et al. (2008) Splicing mediates the activity of four putative cellular internal ribosome entry sites. Proc Natl Acad Sci U S A 105: 4733-4738.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 4733-4738
    • Baranick, B.T.1    Lemp, N.A.2    Nagashima, J.3    Hiraoka, K.4    Kasahara, N.5


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