-
1
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis T, Reed R, (2002) An extensive network of coupling among gene expression machines. Nature 416: 499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
2
-
-
60149103676
-
The centrality of RNA
-
Sharp PA, (2009) The centrality of RNA. Cell 136: 577-580.
-
(2009)
Cell
, vol.136
, pp. 577-580
-
-
Sharp, P.A.1
-
3
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, et al. (2003) Global analysis of protein expression in yeast. Nature 425: 737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
-
4
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
-
5
-
-
0022512237
-
Multiple upstream AUG codons mediate translational control of GCN4
-
Mueller PP, Hinnebusch AG, (1986) Multiple upstream AUG codons mediate translational control of GCN4. Cell 45: 201-207.
-
(1986)
Cell
, vol.45
, pp. 201-207
-
-
Mueller, P.P.1
Hinnebusch, A.G.2
-
6
-
-
0023612118
-
Identification of the iron-responsive element for the translational regulation of human ferritin mRNA
-
Hentze MW, Caughman SW, Rouault TA, Barriocanal JG, Dancis A, et al. (1987) Identification of the iron-responsive element for the translational regulation of human ferritin mRNA. Science 238: 1570-1573.
-
(1987)
Science
, vol.238
, pp. 1570-1573
-
-
Hentze, M.W.1
Caughman, S.W.2
Rouault, T.A.3
Barriocanal, J.G.4
Dancis, A.5
-
7
-
-
0037154965
-
Gene-specific regulation by general translation factors
-
Dever TE, (2002) Gene-specific regulation by general translation factors. Cell 108: 545-556.
-
(2002)
Cell
, vol.108
, pp. 545-556
-
-
Dever, T.E.1
-
8
-
-
5044229348
-
Molecular mechanisms of translational control
-
Gebauer F, Hentze MW, (2004) Molecular mechanisms of translational control. Nat Rev Mol Cell Biol 5: 827-835.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 827-835
-
-
Gebauer, F.1
Hentze, M.W.2
-
9
-
-
0026556814
-
Phosphorylation of initiation factor 2 alpha by protein kinase GCN2 mediates gene-specific translational control of GCN4 in yeast
-
Dever TE, Feng L, Wek RC, Cigan AM, Donahue TF, et al. (1992) Phosphorylation of initiation factor 2 alpha by protein kinase GCN2 mediates gene-specific translational control of GCN4 in yeast. Cell 68: 585-596.
-
(1992)
Cell
, vol.68
, pp. 585-596
-
-
Dever, T.E.1
Feng, L.2
Wek, R.C.3
Cigan, A.M.4
Donahue, T.F.5
-
10
-
-
78649375395
-
Translational regulation of gene expression during conditions of cell stress
-
Spriggs KA, Bushell M, Willis AE, (2010) Translational regulation of gene expression during conditions of cell stress. Mol Cell 40: 228-237.
-
(2010)
Mol Cell
, vol.40
, pp. 228-237
-
-
Spriggs, K.A.1
Bushell, M.2
Willis, A.E.3
-
11
-
-
77956556496
-
Control of translation initiation through integration of signals generated by hormones, nutrients, and exercise
-
Kimball SR, Jefferson LS, (2010) Control of translation initiation through integration of signals generated by hormones, nutrients, and exercise. J Biol Chem 285: 29027-29032.
-
(2010)
J Biol Chem
, vol.285
, pp. 29027-29032
-
-
Kimball, S.R.1
Jefferson, L.S.2
-
12
-
-
0242362748
-
Ribosomes rule: translation, not transcription, is the primary target of two major intercellular signaling pathways
-
Lasko P, (2003) Ribosomes rule: translation, not transcription, is the primary target of two major intercellular signaling pathways. Dev Cell 5: 671-672.
-
(2003)
Dev Cell
, vol.5
, pp. 671-672
-
-
Lasko, P.1
-
13
-
-
0033634654
-
Regulated translation initiation controls stress-induced gene expression in mammalian cells
-
Harding HP, Novoa I, Zhang Y, Zeng H, Wek R, et al. (2000) Regulated translation initiation controls stress-induced gene expression in mammalian cells. Mol Cell 6: 1099-1108.
-
(2000)
Mol Cell
, vol.6
, pp. 1099-1108
-
-
Harding, H.P.1
Novoa, I.2
Zhang, Y.3
Zeng, H.4
Wek, R.5
-
14
-
-
0032834055
-
eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation
-
Gingras AC, Raught B, Sonenberg N, (1999) eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation. Annu Rev Biochem 68: 913-963.
-
(1999)
Annu Rev Biochem
, vol.68
, pp. 913-963
-
-
Gingras, A.C.1
Raught, B.2
Sonenberg, N.3
-
15
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: mechanisms and biological targets
-
Sonenberg N, Hinnebusch AG, (2009) Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136: 731-745.
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
16
-
-
0028034233
-
Insulin-dependent stimulation of protein synthesis by phosphorylation of a regulator of 5′-cap function
-
Pause A, Belsham GJ, Gingras AC, Donze O, Lin TA, et al. (1994) Insulin-dependent stimulation of protein synthesis by phosphorylation of a regulator of 5′-cap function. Nature 371: 762-767.
-
(1994)
Nature
, vol.371
, pp. 762-767
-
-
Pause, A.1
Belsham, G.J.2
Gingras, A.C.3
Donze, O.4
Lin, T.A.5
-
17
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
18
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
-
19
-
-
72949115517
-
Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
-
Hendrickson DG, Hogan DJ, McCullough HL, Myers JW, Herschlag D, et al. (2009) Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol 7: e1000238.
-
(2009)
PLoS Biol
, vol.7
-
-
Hendrickson, D.G.1
Hogan, D.J.2
McCullough, H.L.3
Myers, J.W.4
Herschlag, D.5
-
20
-
-
0025832056
-
Translational control in mammalian cells
-
Hershey JW, (1991) Translational control in mammalian cells. Annu Rev Biochem 60: 717-755.
-
(1991)
Annu Rev Biochem
, vol.60
, pp. 717-755
-
-
Hershey, J.W.1
-
21
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson RJ, Hellen CU, Pestova TV, (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat Rev Mol Cell Biol 11: 113-127.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
22
-
-
0034711012
-
Phosphorylation of serine 51 in initiation factor 2 alpha (eIF2 alpha) promotes complex formation between eIF2 alpha(P) and eIF2B and causes inhibition in the guanine nucleotide exchange activity of eIF2B
-
Sudhakar A, Ramachandran A, Ghosh S, Hasnain SE, Kaufman RJ, et al. (2000) Phosphorylation of serine 51 in initiation factor 2 alpha (eIF2 alpha) promotes complex formation between eIF2 alpha(P) and eIF2B and causes inhibition in the guanine nucleotide exchange activity of eIF2B. Biochemistry 39: 12929-12938.
-
(2000)
Biochemistry
, vol.39
, pp. 12929-12938
-
-
Sudhakar, A.1
Ramachandran, A.2
Ghosh, S.3
Hasnain, S.E.4
Kaufman, R.J.5
-
23
-
-
0037416211
-
Stress-induced gene expression requires programmed recovery from translational repression
-
Novoa I, Zhang Y, Zeng H, Jungreis R, Harding HP, et al. (2003) Stress-induced gene expression requires programmed recovery from translational repression. Embo J 22: 1180-1187.
-
(2003)
Embo J
, vol.22
, pp. 1180-1187
-
-
Novoa, I.1
Zhang, Y.2
Zeng, H.3
Jungreis, R.4
Harding, H.P.5
-
24
-
-
0034973982
-
Translational control is required for the unfolded protein response and in vivo glucose homeostasis
-
Scheuner D, Song B, McEwen E, Liu C, Laybutt R, et al. (2001) Translational control is required for the unfolded protein response and in vivo glucose homeostasis. Mol Cell 7: 1165-1176.
-
(2001)
Mol Cell
, vol.7
, pp. 1165-1176
-
-
Scheuner, D.1
Song, B.2
McEwen, E.3
Liu, C.4
Laybutt, R.5
-
25
-
-
33644779804
-
Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48 S translation initiation complex
-
Pisarev AV, Kolupaeva VG, Pisareva VP, Merrick WC, Hellen CU, et al. (2006) Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48 S translation initiation complex. Genes Dev 20: 624-636.
-
(2006)
Genes Dev
, vol.20
, pp. 624-636
-
-
Pisarev, A.V.1
Kolupaeva, V.G.2
Pisareva, V.P.3
Merrick, W.C.4
Hellen, C.U.5
-
26
-
-
27144555357
-
Regulation of translation via mRNA structure in prokaryotes and eukaryotes
-
Kozak M, (2005) Regulation of translation via mRNA structure in prokaryotes and eukaryotes. Gene 361: 13-37.
-
(2005)
Gene
, vol.361
, pp. 13-37
-
-
Kozak, M.1
-
27
-
-
0031010944
-
Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6
-
Kozak M, (1997) Recognition of AUG and alternative initiator codons is augmented by G in position +4 but is not generally affected by the nucleotides in positions +5 and +6. Embo J 16: 2482-2492.
-
(1997)
Embo J
, vol.16
, pp. 2482-2492
-
-
Kozak, M.1
-
28
-
-
0025107694
-
Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes
-
Kozak M, (1990) Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Proc Natl Acad Sci U S A 87: 8301-8305.
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, pp. 8301-8305
-
-
Kozak, M.1
-
29
-
-
0022552131
-
Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes
-
Kozak M, (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44: 283-292.
-
(1986)
Cell
, vol.44
, pp. 283-292
-
-
Kozak, M.1
-
30
-
-
12344281782
-
The implications of structured 5′ untranslated regions on translation and disease
-
Pickering BM, Willis AE, (2005) The implications of structured 5′ untranslated regions on translation and disease. Semin Cell Dev Biol 16: 39-47.
-
(2005)
Semin Cell Dev Biol
, vol.16
, pp. 39-47
-
-
Pickering, B.M.1
Willis, A.E.2
-
31
-
-
0023720048
-
Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA
-
Pelletier J, Sonenberg N, (1988) Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA. Nature 334: 320-325.
-
(1988)
Nature
, vol.334
, pp. 320-325
-
-
Pelletier, J.1
Sonenberg, N.2
-
32
-
-
28844476749
-
Alternative mechanisms of initiating translation of mammalian mRNAs
-
Jackson RJ, (2005) Alternative mechanisms of initiating translation of mammalian mRNAs. Biochem Soc Trans 33: 1231-1241.
-
(2005)
Biochem Soc Trans
, vol.33
, pp. 1231-1241
-
-
Jackson, R.J.1
-
33
-
-
3843117589
-
Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells
-
Vattem KM, Wek RC, (2004) Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells. Proc Natl Acad Sci U S A 101: 11269-11274.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 11269-11274
-
-
Vattem, K.M.1
Wek, R.C.2
-
34
-
-
5444264022
-
Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response
-
Lu PD, Harding HP, Ron D, (2004) Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response. J Cell Biol 167: 27-33.
-
(2004)
J Cell Biol
, vol.167
, pp. 27-33
-
-
Lu, P.D.1
Harding, H.P.2
Ron, D.3
-
35
-
-
41449095062
-
Phosphorylation of eIF2 directs ATF5 translational control in response to diverse stress conditions
-
Zhou D, Palam LR, Jiang L, Narasimhan J, Staschke KA, et al. (2008) Phosphorylation of eIF2 directs ATF5 translational control in response to diverse stress conditions. J Biol Chem 283: 7064-7073.
-
(2008)
J Biol Chem
, vol.283
, pp. 7064-7073
-
-
Zhou, D.1
Palam, L.R.2
Jiang, L.3
Narasimhan, J.4
Staschke, K.A.5
-
36
-
-
65449141379
-
An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation
-
Lee YY, Cevallos RC, Jan E, (2009) An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation. J Biol Chem 284: 6661-6673.
-
(2009)
J Biol Chem
, vol.284
, pp. 6661-6673
-
-
Lee, Y.Y.1
Cevallos, R.C.2
Jan, E.3
-
37
-
-
79953224498
-
Phosphorylation of eIF2 facilitates ribosomal bypass of an inhibitory upstream ORF to enhance CHOP translation
-
Palam LR, Baird TD, Wek RC, (2011) Phosphorylation of eIF2 facilitates ribosomal bypass of an inhibitory upstream ORF to enhance CHOP translation. J Biol Chem.
-
(2011)
J Biol Chem
-
-
Palam, L.R.1
Baird, T.D.2
Wek, R.C.3
-
38
-
-
41449112857
-
Stress-induced translation of ATF5 mRNA is regulated by the 5′-untranslated region
-
Watatani Y, Ichikawa K, Nakanishi N, Fujimoto M, Takeda H, et al. (2008) Stress-induced translation of ATF5 mRNA is regulated by the 5′-untranslated region. J Biol Chem 283: 2543-2553.
-
(2008)
J Biol Chem
, vol.283
, pp. 2543-2553
-
-
Watatani, Y.1
Ichikawa, K.2
Nakanishi, N.3
Fujimoto, M.4
Takeda, H.5
-
39
-
-
41449117605
-
uORFs, reinitiation and alternative translation start sites in human mRNAs
-
Kochetov AV, Ahmad S, Ivanisenko V, Volkova OA, Kolchanov NA, et al. (2008) uORFs, reinitiation and alternative translation start sites in human mRNAs. FEBS Lett 582: 1293-1297.
-
(2008)
FEBS Lett
, vol.582
, pp. 1293-1297
-
-
Kochetov, A.V.1
Ahmad, S.2
Ivanisenko, V.3
Volkova, O.A.4
Kolchanov, N.A.5
-
40
-
-
66149118241
-
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
-
Calvo SE, Pagliarini DJ, Mootha VK, (2009) Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc Natl Acad Sci U S A 106: 7507-7512.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 7507-7512
-
-
Calvo, S.E.1
Pagliarini, D.J.2
Mootha, V.K.3
-
41
-
-
34250735674
-
RNA regulons: coordination of post-transcriptional events
-
Keene JD, (2007) RNA regulons: coordination of post-transcriptional events. Nat Rev Genet 8: 533-543.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
42
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS, (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
43
-
-
65249176527
-
Stress-Dependent Coordination of Transcriptome and Translatome in Yeast
-
Halbeisen RE, Gerber AP, (2009) Stress-Dependent Coordination of Transcriptome and Translatome in Yeast. PLoS Biol 7: e105.
-
(2009)
PLoS Biol
, vol.7
-
-
Halbeisen, R.E.1
Gerber, A.P.2
-
44
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava Y, Wang Y, Storey JD, Liu CL, Brown PO, et al. (2003) Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 100: 3889-3894.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
-
45
-
-
33646731568
-
Expression profiling reveals meiotic male germ cell mRNAs that are translationally up- and down-regulated
-
Iguchi N, Tobias JW, Hecht NB, (2006) Expression profiling reveals meiotic male germ cell mRNAs that are translationally up- and down-regulated. Proc Natl Acad Sci U S A 103: 7712-7717.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 7712-7717
-
-
Iguchi, N.1
Tobias, J.W.2
Hecht, N.B.3
-
46
-
-
34250812108
-
Identification of mRNAs that continue to associate with polysomes during hypoxia
-
Thomas JD, Johannes GJ, (2007) Identification of mRNAs that continue to associate with polysomes during hypoxia. Rna 13: 1116-1131.
-
(2007)
Rna
, vol.13
, pp. 1116-1131
-
-
Thomas, J.D.1
Johannes, G.J.2
-
47
-
-
32944460143
-
Messenger RNAs under differential translational control in Ki-ras-transformed cells
-
Spence J, Duggan BM, Eckhardt C, McClelland M, Mercola D, (2006) Messenger RNAs under differential translational control in Ki-ras-transformed cells. Mol Cancer Res 4: 47-60.
-
(2006)
Mol Cancer Res
, vol.4
, pp. 47-60
-
-
Spence, J.1
Duggan, B.M.2
Eckhardt, C.3
McClelland, M.4
Mercola, D.5
-
48
-
-
68849087185
-
eIF2alpha kinases GCN2 and PERK modulate transcription and translation of distinct sets of mRNAs in mouse liver
-
Dang Do AN, Kimball SR, Cavener DR, Jefferson LS, (2009) eIF2alpha kinases GCN2 and PERK modulate transcription and translation of distinct sets of mRNAs in mouse liver. Physiol Genomics 38: 328-341.
-
(2009)
Physiol Genomics
, vol.38
, pp. 328-341
-
-
Dang Do, A.N.1
Kimball, S.R.2
Cavener, D.R.3
Jefferson, L.S.4
-
49
-
-
2342518844
-
Diverse and specific gene expression responses to stresses in cultured human cells
-
Murray JI, Whitfield ML, Trinklein ND, Myers RM, Brown PO, et al. (2004) Diverse and specific gene expression responses to stresses in cultured human cells. Mol Biol Cell 15: 2361-2374.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 2361-2374
-
-
Murray, J.I.1
Whitfield, M.L.2
Trinklein, N.D.3
Myers, R.M.4
Brown, P.O.5
-
50
-
-
0027530567
-
Inhibition of protein synthesis and early protein processing by thapsigargin in cultured cells
-
Wong WL, Brostrom MA, Kuznetsov G, Gmitter-Yellen D, Brostrom CO, (1993) Inhibition of protein synthesis and early protein processing by thapsigargin in cultured cells. Biochem J 289 (Pt 1): 71-79.
-
(1993)
Biochem J
, vol.289
, Issue.Pt 1
, pp. 71-79
-
-
Wong, W.L.1
Brostrom, M.A.2
Kuznetsov, G.3
Gmitter-Yellen, D.4
Brostrom, C.O.5
-
51
-
-
2342639670
-
Signaling control of mRNA translation in cancer pathogenesis
-
Holland EC, Sonenberg N, Pandolfi PP, Thomas G, (2004) Signaling control of mRNA translation in cancer pathogenesis. Oncogene 23: 3138-3144.
-
(2004)
Oncogene
, vol.23
, pp. 3138-3144
-
-
Holland, E.C.1
Sonenberg, N.2
Pandolfi, P.P.3
Thomas, G.4
-
52
-
-
1642553650
-
Defective translational control facilitates vesicular stomatitis virus oncolysis
-
Balachandran S, Barber GN, (2004) Defective translational control facilitates vesicular stomatitis virus oncolysis. Cancer Cell 5: 51-65.
-
(2004)
Cancer Cell
, vol.5
, pp. 51-65
-
-
Balachandran, S.1
Barber, G.N.2
-
53
-
-
0242361561
-
Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes
-
Rajasekhar VK, Viale A, Socci ND, Wiedmann M, Hu X, et al. (2003) Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes. Mol Cell 12: 889-901.
-
(2003)
Mol Cell
, vol.12
, pp. 889-901
-
-
Rajasekhar, V.K.1
Viale, A.2
Socci, N.D.3
Wiedmann, M.4
Hu, X.5
-
54
-
-
0036591973
-
BiP is feed-back regulated by control of protein translation efficiency
-
Gulow K, Bienert D, Haas IG, (2002) BiP is feed-back regulated by control of protein translation efficiency. J Cell Sci 115: 2443-2452.
-
(2002)
J Cell Sci
, vol.115
, pp. 2443-2452
-
-
Gulow, K.1
Bienert, D.2
Haas, I.G.3
-
55
-
-
0033539681
-
Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray
-
Johannes G, Carter MS, Eisen MB, Brown PO, Sarnow P, (1999) Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray. Proc Natl Acad Sci U S A 96: 13118-13123.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 13118-13123
-
-
Johannes, G.1
Carter, M.S.2
Eisen, M.B.3
Brown, P.O.4
Sarnow, P.5
-
56
-
-
0032160381
-
IRP-1 binding to ferritin mRNA prevents the recruitment of the small ribosomal subunit by the cap-binding complex eIF4F
-
Muckenthaler M, Gray NK, Hentze MW, (1998) IRP-1 binding to ferritin mRNA prevents the recruitment of the small ribosomal subunit by the cap-binding complex eIF4F. Mol Cell 2: 383-388.
-
(1998)
Mol Cell
, vol.2
, pp. 383-388
-
-
Muckenthaler, M.1
Gray, N.K.2
Hentze, M.W.3
-
57
-
-
48449104742
-
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
-
Al-Shahrour F, Carbonell J, Minguez P, Goetz S, Conesa A, et al. (2008) Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res 36: W341-346.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Al-Shahrour, F.1
Carbonell, J.2
Minguez, P.3
Goetz, S.4
Conesa, A.5
-
58
-
-
35548935529
-
AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
-
Kochetov AV, Palyanov A, Titov II, Grigorovich D, Sarai A, et al. (2007) AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinformatics 8: 318.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 318
-
-
Kochetov, A.V.1
Palyanov, A.2
Titov, I.I.3
Grigorovich, D.4
Sarai, A.5
-
59
-
-
0026723117
-
mRNAs containing extensive secondary structure in their 5′ non-coding region translate efficiently in cells overexpressing initiation factor eIF-4E
-
Koromilas AE, Lazaris-Karatzas A, Sonenberg N, (1992) mRNAs containing extensive secondary structure in their 5′ non-coding region translate efficiently in cells overexpressing initiation factor eIF-4E. Embo J 11: 4153-4158.
-
(1992)
Embo J
, vol.11
, pp. 4153-4158
-
-
Koromilas, A.E.1
Lazaris-Karatzas, A.2
Sonenberg, N.3
-
60
-
-
77956306662
-
Genome-wide measurement of RNA secondary structure in yeast
-
Kertesz M, Wan Y, Mazor E, Rinn JL, Nutter RC, et al. (2010) Genome-wide measurement of RNA secondary structure in yeast. Nature 467: 103-107.
-
(2010)
Nature
, vol.467
, pp. 103-107
-
-
Kertesz, M.1
Wan, Y.2
Mazor, E.3
Rinn, J.L.4
Nutter, R.C.5
-
61
-
-
77958493102
-
The mRNA landscape at yeast translation initiation sites
-
Robbins-Pianka A, Rice MD, Weir MP, (2010) The mRNA landscape at yeast translation initiation sites. Bioinformatics 26: 2651-2655.
-
(2010)
Bioinformatics
, vol.26
, pp. 2651-2655
-
-
Robbins-Pianka, A.1
Rice, M.D.2
Weir, M.P.3
-
62
-
-
29944433224
-
Translational resistance of late alphavirus mRNA to eIF2alpha phosphorylation: a strategy to overcome the antiviral effect of protein kinase PKR
-
Ventoso I, Sanz MA, Molina S, Berlanga JJ, Carrasco L, et al. (2006) Translational resistance of late alphavirus mRNA to eIF2alpha phosphorylation: a strategy to overcome the antiviral effect of protein kinase PKR. Genes Dev 20: 87-100.
-
(2006)
Genes Dev
, vol.20
, pp. 87-100
-
-
Ventoso, I.1
Sanz, M.A.2
Molina, S.3
Berlanga, J.J.4
Carrasco, L.5
-
63
-
-
0035947778
-
Feedback inhibition of the unfolded protein response by GADD34-mediated dephosphorylation of eIF2alpha
-
Novoa I, Zeng H, Harding HP, Ron D, (2001) Feedback inhibition of the unfolded protein response by GADD34-mediated dephosphorylation of eIF2alpha. J Cell Biol 153: 1011-1022.
-
(2001)
J Cell Biol
, vol.153
, pp. 1011-1022
-
-
Novoa, I.1
Zeng, H.2
Harding, H.P.3
Ron, D.4
-
64
-
-
2442455643
-
Protein profile of the HeLa cell line
-
Fountoulakis M, Tsangaris G, Oh JE, Maris A, Lubec G, (2004) Protein profile of the HeLa cell line. J Chromatogr A 1038: 247-265.
-
(2004)
J Chromatogr A
, vol.1038
, pp. 247-265
-
-
Fountoulakis, M.1
Tsangaris, G.2
Oh, J.E.3
Maris, A.4
Lubec, G.5
-
65
-
-
34548459898
-
Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling
-
Wu L, Hwang SI, Rezaul K, Lu LJ, Mayya V, et al. (2007) Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling. Mol Cell Proteomics 6: 1343-1353.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1343-1353
-
-
Wu, L.1
Hwang, S.I.2
Rezaul, K.3
Lu, L.J.4
Mayya, V.5
-
66
-
-
2442553728
-
Towards a standardized human proteome database: quantitative proteome profiling of living cells
-
Traxler E, Bayer E, Stockl J, Mohr T, Lenz C, et al. (2004) Towards a standardized human proteome database: quantitative proteome profiling of living cells. Proteomics 4: 1314-1323.
-
(2004)
Proteomics
, vol.4
, pp. 1314-1323
-
-
Traxler, E.1
Bayer, E.2
Stockl, J.3
Mohr, T.4
Lenz, C.5
-
67
-
-
33745968529
-
Knowledge-based proteome profiling: considering identified proteins to evaluate separation efficiency by 2-D PAGE
-
Gundacker N, Bayer E, Traxler E, Zwickl H, Kubicek M, et al. (2006) Knowledge-based proteome profiling: considering identified proteins to evaluate separation efficiency by 2-D PAGE. Electrophoresis 27: 2712-2721.
-
(2006)
Electrophoresis
, vol.27
, pp. 2712-2721
-
-
Gundacker, N.1
Bayer, E.2
Traxler, E.3
Zwickl, H.4
Kubicek, M.5
-
68
-
-
0345602742
-
Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
-
Preiss T, Baron-Benhamou J, Ansorge W, Hentze MW, (2003) Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat Struct Biol 10: 1039-1047.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 1039-1047
-
-
Preiss, T.1
Baron-Benhamou, J.2
Ansorge, W.3
Hentze, M.W.4
-
69
-
-
0037353039
-
An integrated stress response regulates amino acid metabolism and resistance to oxidative stress
-
Harding HP, Zhang Y, Zeng H, Novoa I, Lu PD, et al. (2003) An integrated stress response regulates amino acid metabolism and resistance to oxidative stress. Mol Cell 11: 619-633.
-
(2003)
Mol Cell
, vol.11
, pp. 619-633
-
-
Harding, H.P.1
Zhang, Y.2
Zeng, H.3
Novoa, I.4
Lu, P.D.5
-
70
-
-
0030041884
-
Translation initiation of ornithine decarboxylase and nucleocytoplasmic transport of cyclin D1 mRNA are increased in cells overexpressing eukaryotic initiation factor 4E
-
Rousseau D, Kaspar R, Rosenwald I, Gehrke L, Sonenberg N, (1996) Translation initiation of ornithine decarboxylase and nucleocytoplasmic transport of cyclin D1 mRNA are increased in cells overexpressing eukaryotic initiation factor 4E. Proc Natl Acad Sci U S A 93: 1065-1070.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 1065-1070
-
-
Rousseau, D.1
Kaspar, R.2
Rosenwald, I.3
Gehrke, L.4
Sonenberg, N.5
-
71
-
-
76049108205
-
The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis
-
Parsyan A, Shahbazian D, Martineau Y, Petroulakis E, Alain T, et al. (2009) The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis. Proc Natl Acad Sci U S A 106: 22217-22222.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 22217-22222
-
-
Parsyan, A.1
Shahbazian, D.2
Martineau, Y.3
Petroulakis, E.4
Alain, T.5
-
72
-
-
2342584183
-
eIF4E-from translation to transformation
-
Mamane Y, Petroulakis E, Rong L, Yoshida K, Ler LW, et al. (2004) eIF4E-from translation to transformation. Oncogene 23: 3172-3179.
-
(2004)
Oncogene
, vol.23
, pp. 3172-3179
-
-
Mamane, Y.1
Petroulakis, E.2
Rong, L.3
Yoshida, K.4
Ler, L.W.5
-
73
-
-
26444621352
-
Why highly expressed proteins evolve slowly
-
Drummond DA, Bloom JD, Adami C, Wilke CO, Arnold FH, (2005) Why highly expressed proteins evolve slowly. Proc Natl Acad Sci U S A 102: 14338-14343.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 14338-14343
-
-
Drummond, D.A.1
Bloom, J.D.2
Adami, C.3
Wilke, C.O.4
Arnold, F.H.5
-
74
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi SP, Rochon Y, Franza BR, Aebersold R, (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
75
-
-
34250899722
-
Signal integration in the endoplasmic reticulum unfolded protein response
-
Ron D, Walter P, (2007) Signal integration in the endoplasmic reticulum unfolded protein response. Nat Rev Mol Cell Biol 8: 519-529.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 519-529
-
-
Ron, D.1
Walter, P.2
-
76
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, et al. (2010) An atlas of combinatorial transcriptional regulation in mouse and man. Cell 140: 744-752.
-
(2010)
Cell
, vol.140
, pp. 744-752
-
-
Ravasi, T.1
Suzuki, H.2
Cannistraci, C.V.3
Katayama, S.4
Bajic, V.B.5
-
77
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of Mammalian proteomes
-
Ingolia NT, Lareau LF, Weissman JS, (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of Mammalian proteomes. Cell 147: 789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
78
-
-
0037928879
-
Distinctive properties of the 5′-untranslated region of human hsp70 mRNA
-
Rubtsova MP, Sizova DV, Dmitriev SE, Ivanov DS, Prassolov VS, et al. (2003) Distinctive properties of the 5′-untranslated region of human hsp70 mRNA. J Biol Chem 278: 22350-22356.
-
(2003)
J Biol Chem
, vol.278
, pp. 22350-22356
-
-
Rubtsova, M.P.1
Sizova, D.V.2
Dmitriev, S.E.3
Ivanov, D.S.4
Prassolov, V.S.5
-
79
-
-
0031790633
-
Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites
-
Johannes G, Sarnow P, (1998) Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites. RNA 4: 1500-1513.
-
(1998)
RNA
, vol.4
, pp. 1500-1513
-
-
Johannes, G.1
Sarnow, P.2
-
80
-
-
0037166289
-
Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha
-
Fernandez J, Yaman I, Sarnow P, Snider MD, Hatzoglou M, (2002) Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha. J Biol Chem 277: 19198-19205.
-
(2002)
J Biol Chem
, vol.277
, pp. 19198-19205
-
-
Fernandez, J.1
Yaman, I.2
Sarnow, P.3
Snider, M.D.4
Hatzoglou, M.5
-
81
-
-
0034212658
-
The chicken c-Jun 5′ untranslated region directs translation by internal initiation
-
Sehgal A, Briggs J, Rinehart-Kim J, Basso J, Bos TJ, (2000) The chicken c-Jun 5′ untranslated region directs translation by internal initiation. Oncogene 19: 2836-2845.
-
(2000)
Oncogene
, vol.19
, pp. 2836-2845
-
-
Sehgal, A.1
Briggs, J.2
Rinehart-Kim, J.3
Basso, J.4
Bos, T.J.5
-
82
-
-
0032556949
-
C-Myc 5′ untranslated region contains an internal ribosome entry segment
-
Stoneley M, Paulin FE, Le Quesne JP, Chappell SA, Willis AE, (1998) C-Myc 5′ untranslated region contains an internal ribosome entry segment. Oncogene 16: 423-428.
-
(1998)
Oncogene
, vol.16
, pp. 423-428
-
-
Stoneley, M.1
Paulin, F.E.2
Le Quesne, J.P.3
Chappell, S.A.4
Willis, A.E.5
-
83
-
-
42449126726
-
Splicing mediates the activity of four putative cellular internal ribosome entry sites
-
Baranick BT, Lemp NA, Nagashima J, Hiraoka K, Kasahara N, et al. (2008) Splicing mediates the activity of four putative cellular internal ribosome entry sites. Proc Natl Acad Sci U S A 105: 4733-4738.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4733-4738
-
-
Baranick, B.T.1
Lemp, N.A.2
Nagashima, J.3
Hiraoka, K.4
Kasahara, N.5
|