Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 7, 2003, Pages 3889-3894

  Arava, Yoav ^a,b   Wang, Yulei ^a   Storey, John D ^a   Liu, Chih Long ^a   Brown, Patrick O ^a,b   Herschlag, Daniel ^a  

^a STANFORD UNIVERSITY   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; FUNGAL RNA;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; CPA1 GENE; DNA MICROARRAY; GCN4 GENE; GENE; GENE EXPRESSION REGULATION; GENOME ANALYSIS; ICY2 GENE; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RIBOSOME; RNA TRANSLATION; SACCHAROMYCES CEREVISIAE; SEDIMENTATION RATE; SUCROSE GRADIENT; GENETICS; GENOME; METABOLISM; POLYSOME; PROTEIN SYNTHESIS; ULTRASTRUCTURE;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

GENOME, FUNGAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYRIBOSOMES; PROTEIN BIOSYNTHESIS; RIBOSOMES; RNA, FUNGAL; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE;

EID: 0037388094     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0635171100     Document Type: Article

References (51)

1. Hughes, T. R., Marton, M. J., Jones, A. R., Roberts, C. J., Stoughton, R., Armour, C. D., Bennett, H. A., Coffey, E., Dai, H., He, Y. D., et al. (2000) Cell 102, 109-126.
2. Spellman, P. T., Sherlock, G., Zhang, M. Q., Iyer, V. R., Anders, K., Eisen, M. B., Brown, P. O., Botstein, D. & Futcher, B. (1998) Mol. Biol. Cell 9, 3273-3297.
3. Holstege, F. C., Jennings, E. G., Wyrick, J. J., Lee, T. I., Hengartner, C. J., Green, M. R., Golub, T. R., Lander, E. S. & Young, R. A. (1998) Cell 95, 717-728.
4. DeRisi, J. L., Iyer, V. R. & Brown, P. O. (1997) Science 278, 680-686.
5. Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., et al. (1999) Science 285, 901-906.
6. Brown, P. O., & Botstein, D. (1999) Nat. Genet. 21, 33-37.
7. Velculescu, V. E., Zhang, L., Zhou, W., Vogelstein, J., Basrai, M. A., Bassett, D. E., Jr., Hieter, P., Vogelstein, B. & Kinzler, K. W. (1997) Cell 88, 243-251.
8. Clark, T. A., Sugnet, C. W. & Ares, M., Jr. (2002) Science 296, 907-910.
9. Wang, Y., Liu, C. L., Storey, J. D., Tibshirani, R. J., Herschlag, D. & Brown, P. O. (2002) Proc. Natl. Acad. Sci. USA 99, 5860-5865.
10. Diehn, M., Eisen, M. B., Botstein, D. & Brown, P. O. (2000) Nat. Genet 25, 58-62.
11. Marc, P., Margeot, A., Devaux, F., Blugeon, C., Corral-Debrinski, M. & Jacq, C. (2002) EMBO Rep. 3. 159-164.
12. Tenenbaum, S. A., Carson, C. C., Lager, P. J. & Keene, J. D. (2000) Proc. Natl. Acad. Sci. USA 97, 14085-14090.
13. Johannes, G., Carter, M. S., Eisen, M. B., Brown, P. O., & Sarnow, P. (1999) Proc. Natl. Acad. Sci. USA 96, 13118-13123.
14. Zong, Q., Schummer, M., Hood, L. & Morris, D. R. (1999) Proc. Natl. Acad. Sci. USA 96, 10632-10636.
15. Kuhn, K. M., DeRisi, J. L., Brown, P. O. & Sarnow, P. (2001) Mol. Cell. Biol. 21, 916-927.
16. Mikulits, W., Pradet-Balade, B., Habermann, B., Beug, H., Garcia-Sanz, J. A., & Mullner, E. W. (2000) FASEB J. 14, 1641-1652.
17. Brown, V., Jin, P., Ceman, S., Darnell, J. C., O'Donnell, W. T., Tenenbaum, S. A., Jin, X., Feng, Y., Wilkinson, K. D., Keene, J. D., et al. (2001) Cell 107, 477-487.
18. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J. D., Jacq, C., Johnston, M., et al (1996) Science 274, 546-567.
19. Hershey, J. W. B. & Merrick, W. C. (2000) in Translational Control of Gene Expression, eds. Sonenberg, N., Hershey, J. W. B. & Mathews, M. B. (Cold Spring Harbor Lab. Press, Plainview. NY), pp. 33-88.
20. McCarthy, J. E. G. (1998) Microbiol. Mol. Biol Rev. 62, 1492-1553.
21. Spahn, C. M., Beckmann, R., Eswar, N., Penezek, P. A., Sali, A., Blobel, G. & Frank, J. (2001) Cell 107, 373-386.
22. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1994) Current Protocol in Molecular Biology (Greene, New York).
23. Efron, B. & Tibshirani, R. J. (1993)An Introduction to the Bootstrap (Chapman & Hall, New York).
24. Noll, H. (1967) Nature 215, 360-363.
25. Rickwood, D. (1992) Preparative Centrifugation: A Practical Approach (Oxford Univ. Press, New York).
26. Ashe, M. P., De Long, S. K. & Sachs, A. B. (2000) Mol. Biol. Cell 11, 833-848.
27. Dickson, L. M. & Brown, A. J. (1998) Mol. Gen Genet. 259, 282-293.
28. Meyuhas, O., Bibrerman, Y., Pierandrei-Amaldi, P. & Amaldi, F. (1996) in A Laboratory Guide to RNA: Isolation, Analysis and Synthesis, ed. Kreig, P. A. (Wiley-Liss, New York).
29. Mathews, M. B., Sonenberg, N. & Hershey, J. W. B. (2000) in Translational Control of Gene Expression, eds. Sonenberg, N., Hershey, J. W. B. & Mathews, M. B. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 1-32.
30. Godchaux, W., III, Adamson, S. D. & Herbert, E. (1967) J. Mol. Biol. 27, 57-72.
31. Rajalakshmi, S., Liang, H., Sarma, D. S., Kisilevsky, R. & Farber, E. (1971) Biochem. Biophys. Res. Commun. 42, 259-265.
32. Oleinick, N. L. (1977) Arch. Biochem. Biophys. 182, 171-180.
33. Tzamarias, D., Roussou, I. & Thireos, G. (1989) Cell 57, 947-954.
34. Yu, X. & Warner, J. R. (2001) J. Biol. Chem. 276, 33821-33825.
35. LaGrandeur, T. & Parker, R. (1999) RNA 5, 420-433.
36. Ruegsegger, U., Leber, J. H. & Walter, P. (2001) Cell 107, 103-114.
37. Werner, M., Feller, A., Messenguy, F. & Pierard, A. (1987) Cell 49. 805-813.
38. Wolin, S. L. & Walter, P. (1988) EMBO J. 7, 3559-3569.
39. Sachs, A. B. (2000) in Tranlational Control of Gene Expression. eds. Sonenberg, N., Hershey, J. W. B. & Mathews, M. B. (Cold Spring Harbor Lab. Press. Plainview, NY). pp. 447-466.
40. Jorgensen, F. & Kurland, C. G. (1990) J. Mol. Biol. 215, 511-521.
41. Manley, J. L. (1978) J. Mol. Biol. 125, 407-432.
42. Tsung, K., Inouye, S. & Inouye, M. (1989) J. Biol. Chem. 264, 4428-4433.
43. Yewdell, J. W., Anton, L. C. & Bennink, J. R. (1996) J. Immunol. 157, 1823-1826.
44. Cataldo, L., Mastrangelo, M. A. & Kleene, K. C. (1999) Mol. Hum. Reprod. 5, 206-213.
45. Pradet-Balade, B., Boulme, F., Beug, H., Mullner, E. W. & Garcia-Sanz, J. A. (2001) Trends Biochem. Sci. 26, 225-229.
46. Gygi, S. P., Rochon, Y., Franza, B. R. & Aebersold, R. (1999) Mol. Cell. Biol. 19, 1720-1730.
47. Futcher, B., Latter, G. I., Monardo, P., McLaughlin, C. S. & Garrels, J. I. (1999) Mol. Cell. Biol. 19, 7357-7368.
48. Pyronnet, S. & Sonenberg, N. (2001) Curr. Opin. Genet. Dev. 11. 13-18.
49. Sierra, J. M. & Zapata, J. M. (1994) Mol. Biol. Rep. 19, 211-220.
50. Meyuhas, O. (2000) Eur. J Biochem. 267, 6321-6330.
51. Sheikh, M. S. & Fornace, A. J., Jr. (1999) Oncogene 18, 6121-6128.