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Volumn 17, Issue 9, 2011, Pages 1664-1677

NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and Comparison to MC-SYM predictions

Author keywords

Internal loop; NMR; Retrotransposon; RNA motif; RNA structure

Indexed keywords

PURINE; RNA;

EID: 84860395322     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2641911     Document Type: Article
Times cited : (22)

References (113)
  • 1
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • DOI 10.1126/science.1065659
    • Baker D., Sali A. 2001. Protein structure prediction and structural genomics. Science 294: 93-96. (Pubitemid 32952955)
    • (2001) Science , vol.294 , Issue.5540 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 2
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • DOI 10.1126/science.289.5481.905
    • Ban N., Nissen P., Hansen J., Moore P.B., Steitz T.A. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289: 905-920. (Pubitemid 30659939)
    • (2000) Science , vol.289 , Issue.5481 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 4
    • 0034681490 scopus 로고    scopus 로고
    • Crystal structure of the ribonucleoprotein core of the signal recognition particle
    • DOI 10.1126/science.287.5456.1232
    • Batey R.T., Rambo R.P., Lucast L., Rha B., Doudna J.A. 2000. Crystal structure of the ribonucleoprotein core of the signal recognition particle. Science 287: 1232-1239. (Pubitemid 30112139)
    • (2000) Science , vol.287 , Issue.5456 , pp. 1232-1239
    • Batey, R.T.1    Rambo, R.P.2    Lucast, L.3    Rha, B.4    Doudna, J.A.5
  • 5
    • 0035896023 scopus 로고    scopus 로고
    • Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle
    • DOI 10.1006/jmbi.2000.4454
    • Batey R.T., Sagar M.B., Doudna J.A. 2001. Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle. J Mol Biol 307: 229-246. (Pubitemid 33029978)
    • (2001) Journal of Molecular Biology , vol.307 , Issue.1 , pp. 229-246
    • Batey, R.T.1    Sagar, M.B.2    Doudna, J.A.3
  • 7
    • 0026347806 scopus 로고
    • Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: Evidence for ribozyme specific interactions with 29 OH groups
    • Bevilacqua P.C., Turner D.H. 1991. Comparison of binding of mixed ribose-deoxyribose analogues of CUCU to a ribozyme and to GGAGAA by equilibrium dialysis: Evidence for ribozyme specific interactions with 29 OH groups. Biochemistry 30: 10632-10640.
    • (1991) Biochemistry , vol.30 , pp. 10632-10640
    • Bevilacqua, P.C.1    Turner, D.H.2
  • 8
    • 0001606582 scopus 로고
    • Optical properties of nucleic acids, absorption and circular dichroism spectra
    • 3rd ed. (ed. GD Fasman), . CRC Press, Cleveland, OH
    • Borer P.N. 1975. Optical properties of nucleic acids, absorption and circular dichroism spectra. In Handbook of biochemistry and molecular biology: Nucleic acids, 3rd ed. (ed. GD Fasman), pp. 589-595. CRC Press, Cleveland, OH.
    • (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids , pp. 589-595
    • Borer, P.N.1
  • 11
    • 0034718521 scopus 로고    scopus 로고
    • NMR structures of r(GCAGGCGUGC)2and determinants of stability for single guanosine-guanosine base pairs
    • 2and determinants of stability for single guanosine-guanosine base pairs. Biochemistry 39: 11748-11762.
    • (2000) Biochemistry , vol.39 , pp. 11748-11762
    • Burkard, M.E.1    Turner, D.H.2
  • 12
    • 0033618268 scopus 로고    scopus 로고
    • Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs
    • DOI 10.1006/jmbi.1999.2906
    • Burkard M.E., Kierzek R., Turner D.H. 1999. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs. J Mol Biol 290: 967-982. (Pubitemid 29371733)
    • (1999) Journal of Molecular Biology , vol.290 , Issue.5 , pp. 967-982
    • Burkard, M.E.1    Kierzek, R.2    Turner, D.H.3
  • 13
    • 0033049745 scopus 로고    scopus 로고
    • Solution structure of the loop B domain from the hairpin ribozyme
    • DOI 10.1038/6651
    • Butcher S.E., Allain F.H., Feigon J. 1999. Solution structure of the loop B domain from the hairpin ribozyme. Nat Struct Biol 6: 212-216. (Pubitemid 29107222)
    • (1999) Nature Structural Biology , vol.6 , Issue.3 , pp. 212-216
    • Butcher, S.E.1    Allain, F.H.-T.2    Feigon, J.3
  • 14
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • doi: 10.1186/1471-2105-3-2
    • Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D'Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., et al. 2002. The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3: 2. doi: 10.1186/1471-2105-3-2.
    • (2002) BMC Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6    Feng, B.7    Lin, N.8    Madabusi, L.V.9    Muller, K.M.10
  • 15
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • Carter A.P., Clemons W.M., Brodersen D.E., Morgan-Warren R.J., Wimberly B.T., Ramakrishnan V. 2000. Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407: 340-348.
    • (2000) Nature , vol.407 , pp. 340-348
    • Carter, A.P.1    Clemons, W.M.2    Brodersen, D.E.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 17
    • 33645456129 scopus 로고    scopus 로고
    • Consecutive GA pairs stabilize mediumsize RNA internal loops
    • Chen G., Turner D.H. 2006. Consecutive GA pairs stabilize mediumsize RNA internal loops. Biochemistry 45: 4025-4043.
    • (2006) Biochemistry , vol.45 , pp. 4025-4043
    • Chen, G.1    Turner, D.H.2
  • 18
    • 14344256105 scopus 로고    scopus 로고
    • Solution structure of an RNA internal loop with three consecutive sheared GA pairs
    • DOI 10.1021/bi048079y
    • Chen G., Znosko B.M., Kennedy S.D., Krugh T.R., Turner D.H. 2005. Solution structure of an RNA internal loop with three consecutive sheared GA pairs. Biochemistry 44: 2845-2856. (Pubitemid 40293660)
    • (2005) Biochemistry , vol.44 , Issue.8 , pp. 2845-2856
    • Chen, G.1    Znosko, B.M.2    Kennedy, S.D.3    Krugh, T.R.4    Turner, D.H.5
  • 19
    • 33744956966 scopus 로고    scopus 로고
    • An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA
    • DOI 10.1021/bi0524464
    • Chen G., Kennedy S.D., Qiao J., Krugh T.R., Turner D.H. 2006. An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA. Biochemistry 45: 6889-6903. (Pubitemid 43856674)
    • (2006) Biochemistry , vol.45 , Issue.22 , pp. 6889-6903
    • Chen, G.1    Kennedy, S.D.2    Qiao, J.3    Krugh, T.R.4    Turner, D.H.5
  • 20
    • 34547357210 scopus 로고    scopus 로고
    • Stacking effects on local structure in RNA: Changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs
    • DOI 10.1021/jp068732m
    • Chen G., Kierzek R., Yildirim I., Krugh T.R., Turner D.H., Kennedy S.D. 2007. Stacking effects on local structure in RNA: Changes in the structure of tandem GA pairs when flanking GC pairs are replaced by isoG-isoC pairs. J Phys Chem B 111: 6718-6727. (Pubitemid 47152551)
    • (2007) Journal of Physical Chemistry B , vol.111 , Issue.24 , pp. 6718-6727
    • Chen, G.1    Kierzek, R.2    Yildirim, I.3    Krugh, T.R.4    Turner, D.H.5    Kennedy, S.D.6
  • 21
    • 67649197550 scopus 로고    scopus 로고
    • A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops
    • Chen G., Kennedy S.D., Turner D.H. 2009. A CA(+) pair adjacent to a sheared GA or AA pair stabilizes size-symmetric RNA internal loops. Biochemistry 48: 5738-5752.
    • (2009) Biochemistry , vol.48 , pp. 5738-5752
    • Chen, G.1    Kennedy, S.D.2    Turner, D.H.3
  • 22
    • 0033105857 scopus 로고    scopus 로고
    • Structure of influenza virus panhandle RNA studied by NMR spectroscopy and molecular modeling
    • DOI 10.1093/nar/27.5.1392
    • Cheong H.K., Cheong C., Lee Y.S., Seong B.L., Choi B.S. 1999. Structure of influenza virus panhandle RNA studied by NMR spectroscopy and molecular modeling. Nucleic Acids Res 27: 1392-1397. (Pubitemid 29206452)
    • (1999) Nucleic Acids Research , vol.27 , Issue.5 , pp. 1392-1397
    • Cheong, H.-K.1    Cheong, C.2    Lee, Y.-S.3    Seong, B.L.4    Choi, B.-S.5
  • 24
    • 0034786589 scopus 로고    scopus 로고
    • Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation
    • Cromsigt J.A., Hilbers C.W., Wijmenga S.S. 2001. Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. J Biolmol NMR 21: 11-29.
    • (2001) J Biolmol NMR , vol.21 , pp. 11-29
    • Cromsigt, J.A.1    Hilbers, C.W.2    Wijmenga, S.S.3
  • 25
    • 0036849108 scopus 로고    scopus 로고
    • HnRNP A1 controls HIV-1 mRNA splicing through cooperative binding to intron and exon splicing silencers in the context of a conserved secondary structure
    • DOI 10.1017/S1355838202023075
    • Damgaard C.K., Tange T.O., Kjems J. 2002. hnRNP A1 controls HIV-1 mRNA splicing through cooperative binding to intron and exon splicing silencers in the context of a conserved secondary structure. RNA 8: 1401-1415. (Pubitemid 35332964)
    • (2002) RNA , vol.8 , Issue.11 , pp. 1401-1415
    • Damgaard, C.K.1    Tange, T.O.2    Kjems, J.3
  • 28
    • 77951643739 scopus 로고    scopus 로고
    • Atomic accuracy in predicting and designing noncanonical RNA structure
    • Das R., Karanicolas J., Baker D. 2010. Atomic accuracy in predicting and designing noncanonical RNA structure. Nat Methods 7: 291-294.
    • (2010) Nat Methods , vol.7 , pp. 291-294
    • Das, R.1    Karanicolas, J.2    Baker, D.3
  • 29
    • 52049106911 scopus 로고    scopus 로고
    • A solution to limited genomic capacity: Using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA
    • Daugherty M.D., D'Orso I., Frankel A.D. 2008. A solution to limited genomic capacity: Using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA. Mol Cell 31: 824-834.
    • (2008) Mol Cell , vol.31 , pp. 824-834
    • Daugherty, M.D.1    D'Orso, I.2    Frankel, A.D.3
  • 31
    • 0029400480 scopus 로고
    • Nmrpipe - A multidimensional spectral processing system based on Unix Pipes
    • Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., Bax A. 1995. Nmrpipe - a multidimensional spectral processing system based on Unix Pipes. J Biol NMR 6: 277-293.
    • (1995) J Biol NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 34
    • 44149101971 scopus 로고    scopus 로고
    • Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
    • DOI 10.1261/rna.894608
    • Ding F., Sharma S., Chalasani P., Demidov V.V., Broude N.E., Dokholyan N.V. 2008. Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms. RNA 14: 1164-1173. (Pubitemid 351717496)
    • (2008) RNA , vol.14 , Issue.6 , pp. 1164-1173
    • Ding, F.1    Sharma, S.2    Chalasani, P.3    Demidov, V.V.4    Broude, N.E.5    Dokholyan, N.V.6
  • 36
    • 77956026060 scopus 로고    scopus 로고
    • Turning limited experimental information into 3D models of RNA
    • Flores S.C., Altman R.B. 2010. Turning limited experimental information into 3D models of RNA. RNA 16: 1769-1778.
    • (2010) RNA , vol.16 , pp. 1769-1778
    • Flores, S.C.1    Altman, R.B.2
  • 37
    • 0019879374 scopus 로고
    • Proton nuclear magneticresonance study on uridine imido proton-exchange
    • Fritzsche H., Kan L.S., Tso P.O.P. 1981. Proton nuclear magneticresonance study on uridine imido proton-exchange. Biochemistry 20: 6118-6122.
    • (1981) Biochemistry , vol.20 , pp. 6118-6122
    • Fritzsche, H.1    Kan, L.S.2    Tso, P.O.P.3
  • 38
    • 0027956537 scopus 로고
    • A major family of motifs involving G . A mismatches in ribosomal RNA
    • DOI 10.1006/jmbi.1994.1552
    • Gautheret D., Konings D., Gutell R.R. 1994. A major family of motifs involving G.A mismatches in ribosomal RNA. J Mol Biol 242: 1-8. (Pubitemid 24285434)
    • (1994) Journal of Molecular Biology , vol.242 , Issue.1 , pp. 1-8
    • Gautheret, D.1    Konings, D.2    Gutell, R.R.3
  • 39
    • 0035906639 scopus 로고    scopus 로고
    • Quantitative analysis of nucleic acid three-dimensional structures
    • DOI 10.1006/jmbi.2001.4626
    • Gendron P., Lemieux S., Major F. 2001. Quantitative analysis of nucleic acid three-dimensional structures. J Mol Biol 308: 919-936. (Pubitemid 32574369)
    • (2001) Journal of Molecular Biology , vol.308 , Issue.5 , pp. 919-936
    • Gendron, P.1    Lemieux, S.2    Major, F.3
  • 40
    • 67849127180 scopus 로고    scopus 로고
    • Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics
    • Gherghe C.M., Leonard C.W., Ding F., Dokholyan N.V., Weeks K.M. 2009. Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics. J Am Chem Soc 131: 2541-2546.
    • (2009) J Am Chem Soc , vol.131 , pp. 2541-2546
    • Gherghe, C.M.1    Leonard, C.W.2    Ding, F.3    Dokholyan, N.V.4    Weeks, K.M.5
  • 42
    • 0015800196 scopus 로고
    • Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches
    • Gralla J., Crothers D.M. 1973. Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches. J Mol Biol 78: 301-319.
    • (1973) J Mol Biol , vol.78 , pp. 301-319
    • Gralla, J.1    Crothers, D.M.2
  • 43
    • 77954701916 scopus 로고    scopus 로고
    • RNA internal loops with tandem AG pairs: The structure of the 5′GAGU/3′UGAG loop can be dramatically different from others, including 5′AAGU/3′UGAA
    • Hammond N.B., Tolbert B.S., Kierzek R., Turner D.H., Kennedy S.D. 2010. RNA internal loops with tandem AG pairs: The structure of the 5′GAGU/3′UGAG loop can be dramatically different from others, including 5′AAGU/3′UGAA. Biochemistry 49: 5817-5827.
    • (2010) Biochemistry , vol.49 , pp. 5817-5827
    • Hammond, N.B.1    Tolbert, B.S.2    Kierzek, R.3    Turner, D.H.4    Kennedy, S.D.5
  • 44
    • 0035977093 scopus 로고    scopus 로고
    • High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
    • DOI 10.1016/S0092-8674(01)00546-3
    • Harms J., Schluenzen F., Zarivach R., Bashan A., Gat S., Agmon I., Bartels H., Franceschi F., Yonath A. 2001. High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell 107: 679-688. (Pubitemid 34014868)
    • (2001) Cell , vol.107 , Issue.5 , pp. 679-688
    • Harms, J.1    Schluenzen, F.2    Zarivach, R.3    Bashan, A.4    Gat, S.5    Agmon, I.6    Bartels, H.7    Franceschi, F.8    Yonath, A.9
  • 45
    • 41549163979 scopus 로고    scopus 로고
    • Translational Regulation via L11: Molecular Switches on the Ribosome Turned On and Off by Thiostrepton and Micrococcin
    • DOI 10.1016/j.molcel.2008.01.009, PII S1097276508000440
    • Harms J.M., Wilson D.N., Schluenzen F., Connell S.R., Stachelhaus T., Zaborowska Z., Spahn C.M., Fucini P. 2008. Translational regulation via L11: Molecular switches on the ribosome turned on and off by thiostrepton and micrococcin. Mol Cell 30: 26-38. (Pubitemid 351470144)
    • (2008) Molecular Cell , vol.30 , Issue.1 , pp. 26-38
    • Harms, J.M.1    Wilson, D.N.2    Schluenzen, F.3    Connell, S.R.4    Stachelhaus, T.5    Zaborowska, Z.6    Spahn, C.M.T.7    Fucini, P.8
  • 46
    • 48749083055 scopus 로고    scopus 로고
    • NMR-assisted prediction of RNA secondary structure: Identification of a probable pseudoknot in the coding region of an R2 retrotransposon
    • Hart J.M., Kennedy S.D., Mathews D.H., Turner D.H. 2008. NMR-assisted prediction of RNA secondary structure: Identification of a probable pseudoknot in the coding region of an R2 retrotransposon. J Am Chem Soc 130: 10233-10239.
    • (2008) J Am Chem Soc , vol.130 , pp. 10233-10239
    • Hart, J.M.1    Kennedy, S.D.2    Mathews, D.H.3    Turner, D.H.4
  • 47
    • 0001308921 scopus 로고
    • A rapid approximation to the solvent-accessible surface area of atoms
    • Hasel W., Hendrickson T.F., Still W.C. 1988. A rapid approximation to the solvent-accessible surface area of atoms. Tetrahedron Comput Meth 1: 103-116.
    • (1988) Tetrahedron Comput Meth , vol.1 , pp. 103-116
    • Hasel, W.1    Hendrickson, T.F.2    Still, W.C.3
  • 48
    • 16344363338 scopus 로고    scopus 로고
    • Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
    • DOI 10.1093/bioinformatics/bti279
    • Havgaard J.H., Lyngso R.B., Stormo G.D., Gorodkin J. 2005. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics 21: 1815-1824. (Pubitemid 40668016)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 1815-1824
    • Havgaard, J.H.1    Lyngso, R.B.2    Stormo, G.D.3    Gorodkin, J.4
  • 49
    • 0031559569 scopus 로고    scopus 로고
    • The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent
    • DOI 10.1006/jmbi.1997.1158
    • Heus H.A., Wijmenga S.S., Hoppe H., Hilbers C.W. 1997. The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent. J Mol Biol 271: 147-158. (Pubitemid 27338773)
    • (1997) Journal of Molecular Biology , vol.271 , Issue.1 , pp. 147-158
    • Heus, H.A.1    Wijmenga, S.S.2    Hoppe, H.3    Hilbers, C.W.4
  • 50
    • 0036301332 scopus 로고    scopus 로고
    • Secondary structure prediction for aligned RNA sequences
    • DOI 10.1016/S0022-2836(02)00308-X
    • Hofacker I.L., Fekete M., Stadler P.F. 2002. Secondary structure prediction for aligned RNA sequences. J Mol Biol 319: 1059-1066. (Pubitemid 34729418)
    • (2002) Journal of Molecular Biology , vol.319 , Issue.5 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 51
    • 58249111738 scopus 로고    scopus 로고
    • Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters
    • Jonikas M.A., Radmer R.J., Laederach A., Das R., Pearlman S., Herschlag D., Altman R.B. 2009. Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters. RNA 15: 189-199.
    • (2009) RNA , vol.15 , pp. 189-199
    • Jonikas, M.A.1    Radmer, R.J.2    Laederach, A.3    Das, R.4    Pearlman, S.5    Herschlag, D.6    Altman, R.B.7
  • 52
    • 0025374556 scopus 로고
    • Structure of the archaebacterial 7S RNA molecule
    • Kaine B.P. 1990. Structure of the archaebacterial 7S RNA molecule. Mol Gen Genet 221: 315-321. (Pubitemid 20195848)
    • (1990) Molecular and General Genetics , vol.221 , Issue.3 , pp. 315-321
    • Kaine, B.P.1
  • 54
    • 38849104099 scopus 로고    scopus 로고
    • Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function
    • DOI 10.1093/nar/gkm1085
    • Kierzek E., Kierzek R., Moss W.N., Christensen S.M., Eickbush T.H., Turner D.H. 2008. Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function. Nucleic Acids Res 36: 1770-1782. (Pubitemid 351494224)
    • (2008) Nucleic Acids Research , vol.36 , Issue.6 , pp. 1770-1782
    • Kierzek, E.1    Kierzek, R.2    Moss, W.N.3    Christensen, S.M.4    Eickbush, T.H.5    Turner, D.H.6
  • 55
    • 67549143784 scopus 로고    scopus 로고
    • Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints
    • Kierzek E., Christensen S.M., Eickbush T.H., Kierzek R., Turner D.H., Moss W.N. 2009. Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints. J Mol Biol 390: 428-442.
    • (2009) J Mol Biol , vol.390 , pp. 428-442
    • Kierzek, E.1    Christensen, S.M.2    Eickbush, T.H.3    Kierzek, R.4    Turner, D.H.5    Moss, W.N.6
  • 56
    • 0035423087 scopus 로고    scopus 로고
    • The kink-turn: A new RNA secondary structure motif
    • DOI 10.1093/emboj/20.15.4214
    • Klein D.J., Schmeing T.M., Moore P.B., Steitz T.A. 2001. The kink-turn: A new RNA secondary structure motif. EMBO J 20: 4214-4221. (Pubitemid 32751837)
    • (2001) EMBO Journal , vol.20 , Issue.15 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 57
    • 33748582906 scopus 로고    scopus 로고
    • Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements
    • DOI 10.1016/j.cell.2006.08.032, PII S0092867406011469
    • Korostelev A., Trakhanov S., Laurberg M., Noller H.F. 2006. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126: 1065-1077. (Pubitemid 44380300)
    • (2006) Cell , vol.126 , Issue.6 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 58
    • 33745951899 scopus 로고    scopus 로고
    • The UAA/GAN Internal Loop Motif: A New RNA Structural Element that Forms a Cross-strand AAA Stack and Long-range Tertiary Interactions
    • DOI 10.1016/j.jmb.2006.05.066, PII S0022283606006838
    • Lee J.C., Gutell R.R., Russell R. 2006. The UAA/GAN internal loop motif: A new RNA structural element that forms a cross-strand AAA stack and long-range tertiary interactions. J Mol Biol 360: 978-988. (Pubitemid 44062516)
    • (2006) Journal of Molecular Biology , vol.360 , Issue.5 , pp. 978-988
    • Lee, J.C.1    Gutell, R.R.2    Russell, R.3
  • 59
    • 0030747007 scopus 로고    scopus 로고
    • Unusual dynamics and pK(a) shift at the active site of a lead-dependent ribozyme
    • DOI 10.1021/ja9640051, PII S000278639604005X
    • Legault P., Pardi A. 1997. Unusual dynamics and pKa shift at the active site of a lead-dependent ribozyme. J Am Chem Soc 119: 6621-6628. (Pubitemid 27322340)
    • (1997) Journal of the American Chemical Society , vol.119 , Issue.28 , pp. 6621-6628
    • Legault, P.1    Pardi, A.2
  • 60
    • 0037102491 scopus 로고    scopus 로고
    • The non-Watson-Crick base pairs and their associated isostericity matrices
    • Leontis N.B., Stombaugh J., Westhof E. 2002. The non-Watson-Crick base pairs and their associated isostericity matrices. Nucleic Acids Res 30: 3497-3531. (Pubitemid 34919207)
    • (2002) Nucleic Acids Research , vol.30 , Issue.16 , pp. 3497-3531
    • Leontis, N.B.1    Stombaugh, J.2    Westhof, E.3
  • 61
    • 33750214512 scopus 로고    scopus 로고
    • A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation
    • DOI 10.1093/nar/gkl472
    • Lu Z.J., Turner D.H., Mathews D.H. 2006. A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation. Nucleic Acids Res 34: 4912-4924. (Pubitemid 44605634)
    • (2006) Nucleic Acids Research , vol.34 , Issue.17 , pp. 4912-4924
    • Lu, Z.J.1    Turner, D.H.2    Mathews, D.H.3
  • 62
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • DOI 10.1016/0092-8674(93)90078-5
    • Luan D.D., Korman M.H., Jakubczak J.L., Eickbush T.H. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition. Cell 72: 595-605. (Pubitemid 23077747)
    • (1993) Cell , vol.72 , Issue.4 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 63
    • 0039161225 scopus 로고    scopus 로고
    • Thermodynamic prediction of conserved secondary structure: Application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein
    • DOI 10.1006/jmbi.1996.0289
    • Luck R., Steger G., Riesner D. 1996. Thermodynamic prediction of conserved secondary structure: Application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein. J Mol Biol 258: 813-826. (Pubitemid 26150882)
    • (1996) Journal of Molecular Biology , vol.258 , Issue.5 , pp. 813-826
    • Luck, R.1    Steger, G.2    Riesner, D.3
  • 64
    • 0035720187 scopus 로고    scopus 로고
    • RNAPack: An integrated NMR approach to RNA structure determination
    • DOI 10.1006/meth.2001.1244
    • Lukavsky P.J., Puglisi J.D. 2001. RNAPack: An integrated NMR approach to RNA structure determination. Methods 25: 316-332. (Pubitemid 34183556)
    • (2001) Methods , vol.25 , Issue.3 , pp. 316-332
    • Lukavsky, P.J.1    Puglisi, J.D.2
  • 65
    • 0028094855 scopus 로고
    • A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit
    • DOI 10.1006/jmbi.1994.1448
    • Malhotra A., Harvey S.C. 1994. A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit. J Mol Biol 240: 308-340. (Pubitemid 24236641)
    • (1994) Journal of Molecular Biology , vol.240 , Issue.4 , pp. 308-340
    • Malhotra, A.1    Harvey, S.C.2
  • 66
    • 0036974666 scopus 로고    scopus 로고
    • A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding
    • DOI 10.1016/S0022-2836(02)00967-1
    • Marchand V., Mereau A., Jacquenet S., Thomas D., Mougin A., Gattoni R., Stevenin J., Branlant C. 2002. A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding. J Mol Biol 323: 629-652. (Pubitemid 36160221)
    • (2002) Journal of Molecular Biology , vol.323 , Issue.4 , pp. 629-652
    • Marchand, V.1    Mereau, A.2    Jacquenet, S.3    Thomas, D.4    Mougin, A.5    Gattoni, R.6    Stevenin, J.7    Branlant, C.8
  • 68
    • 0036295198 scopus 로고    scopus 로고
    • Dynalign: An algorithm for finding the secondary structure common to two RNA sequences
    • DOI 10.1006/jmbi.2001.5351
    • Mathews D.H., Turner D.H. 2002. Dynalign: An algorithm for finding the secondary structure common to two RNA sequences. J Mol Biol 317: 191-203. (Pubitemid 34722187)
    • (2002) Journal of Molecular Biology , vol.317 , Issue.2 , pp. 191-203
    • Mathews, D.H.1    Turner, D.H.2
  • 71
    • 0029805937 scopus 로고    scopus 로고
    • 2 by two-dimensional NMR and simulated annealing
    • DOI 10.1021/bi9615710
    • McDowell J.A., Turner D.H. 1996. Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: Solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing. Biochemistry 35: 14077-14089. (Pubitemid 26384403)
    • (1996) Biochemistry , vol.35 , Issue.45 , pp. 14077-14089
    • McDowell, J.A.1    Turner, D.H.2
  • 72
    • 0032870204 scopus 로고    scopus 로고
    • Structural motifs in RNA
    • DOI 10.1146/annurev.biochem.68.1.287
    • Moore P.B. 1999. Structural motifs in RNA. Annu Rev Biochem 68: 287-300. (Pubitemid 29449194)
    • (1999) Annual Review of Biochemistry , vol.68 , pp. 287-300
    • Moore, P.B.1
  • 73
    • 0033081413 scopus 로고    scopus 로고
    • The crystal structure of Cys-tRNA(Cys)-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA
    • DOI 10.1016/S0969-2126(99)80021-5
    • Nissen P., Thirup S., Kjeldgaard M., Nyborg J. 1999. The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA. Structure 7: 143-156. (Pubitemid 29159700)
    • (1999) Structure , vol.7 , Issue.2 , pp. 143-156
    • Nissen, P.1    Thirup, S.2    Kjeldgaard, M.3    Nyborg, J.4
  • 74
    • 40449139010 scopus 로고    scopus 로고
    • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    • DOI 10.1038/nature06684, PII NATURE06684
    • Parisien M., Major F. 2008. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature 452: 51-55. (Pubitemid 351355097)
    • (2008) Nature , vol.452 , Issue.7183 , pp. 51-55
    • Parisien, M.1    Major, F.2
  • 75
    • 70349149051 scopus 로고    scopus 로고
    • New metrics for comparing and assessing discrepancies between RNA 3D structures and models
    • Parisien M., Cruz J.A., Westhof E., Major F. 2009. New metrics for comparing and assessing discrepancies between RNA 3D structures and models. RNA 15: 1875-1885.
    • (2009) RNA , vol.15 , pp. 1875-1885
    • Parisien, M.1    Cruz, J.A.2    Westhof, E.3    Major, F.4
  • 76
    • 77956746033 scopus 로고    scopus 로고
    • HiRE-RNA: A high resolution coarse-grained energy model for RNA
    • Pasquali S., Derreumaux P. 2010. HiRE-RNA: A high resolution coarse-grained energy model for RNA. J Phys Chem B 114: 11957-11966.
    • (2010) J Phys Chem B , vol.114 , pp. 11957-11966
    • Pasquali, S.1    Derreumaux, P.2
  • 78
    • 0028277664 scopus 로고
    • A convenient procedure for the deprotection of silylated nucleosides and nucleotides using triethylamine trihydrofluoride
    • DOI 10.1016/S0960-894X(01)80358-9
    • Pirrung M.C., Shuey S.W., Lever D.C., Fallon L. 1994. A convenient procedure for the deprotection of silylated nucleosides and nucleotides using triethylamine trihydrofluoride. Bioorg Med Chem Lett 4: 1345-1346. (Pubitemid 24205611)
    • (1994) Bioorganic and Medicinal Chemistry Letters , vol.4 , Issue.11 , pp. 1345-1346
    • Pirrung, M.C.1    Shuey, S.W.2    Lever, D.C.3    Fallon, L.4
  • 79
    • 0026427239 scopus 로고
    • Ribozyme recognition of RNA by tertiary interactions with specific ribose 2′-OH groups
    • Pyle A.M., Cech T.R. 1991. Ribozyme recognition of RNA by tertiary interactions with specific ribose 2′-OH groups. Nature 350: 628-631. (Pubitemid 21912288)
    • (1991) Nature , vol.350 , Issue.6319 , pp. 628-631
    • Pyle, A.M.1    Cech, T.R.2
  • 80
    • 0034719109 scopus 로고    scopus 로고
    • Adenine protonation in domain B of the hairpin ribozyme
    • DOI 10.1021/bi001976r
    • Ravindranathan S., Butcher S.E., Feigon J. 2000. Adenine protonation in domain B of the hairpin ribozyme. Biochemistry 39: 16026-16032. (Pubitemid 32038265)
    • (2000) Biochemistry , vol.39 , Issue.51 , pp. 16026-16032
    • Ravindranathan, S.1    Butcher, S.E.2    Feigon, J.3
  • 81
    • 24144497144 scopus 로고    scopus 로고
    • Consensus shapes: An alternative to the Sankoff algorithm for RNA consensus structure prediction
    • DOI 10.1093/bioinformatics/bti577
    • Reeder J., Giegerich R. 2005. Consensus shapes: An alternative to the Sankoff algorithm for RNA consensus structure prediction. Bioinformatics 21: 3516-3523. (Pubitemid 41235995)
    • (2005) Bioinformatics , vol.21 , Issue.17 , pp. 3516-3523
    • Reeder, J.1    Giegerich, R.2
  • 82
    • 0037899660 scopus 로고    scopus 로고
    • Polarizable atomic multipole water model for molecular mechanics simulation
    • Ren P.Y., Ponder J.W. 2003. Polarizable atomic multipole water model for molecular mechanics simulation. J Phys Chem B 107: 5933-5947.
    • (2003) J Phys Chem B , vol.107 , pp. 5933-5947
    • Ren, P.Y.1    Ponder, J.W.2
  • 83
    • 0000186216 scopus 로고
    • Use of tables in calculation of absorption, optical rotatory dispersion and circular dichroism of polyribonucleotides
    • 3rd ed. (ed. GD Fasman) CRC Press, Cleveland, OH
    • Richards E.G. 1975. Use of tables in calculation of absorption, optical rotatory dispersion and circular dichroism of polyribonucleotides. In Handbook of biochemistry and molecular biology: Nucleic acids, 3rd ed. (ed. GD Fasman), pp. 596-603. CRC Press, Cleveland, OH.
    • (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids , pp. 596-603
    • Richards, E.G.1
  • 85
    • 0027146665 scopus 로고
    • Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics
    • 2 in solution from NMR and restrained molecular dynamics. Biochemistry 32: 12612-12623.
    • (1993) Biochemistry , vol.32 , pp. 12612-12623
    • SantaLucia Jr., J.1    Turner, D.H.2
  • 86
    • 0032709518 scopus 로고    scopus 로고
    • Structure of the phylogenetically most conserved domain of SRP RNA
    • DOI 10.1017/S1355838299991458
    • Schmitz U., Behrens S., Freymann D.M., Keenan R.J., Lukavsky P., Walter P., James T.L. 1999a. Structure of the phylogenetically most conserved domain of SRP RNA. RNA 5: 1419-1429. (Pubitemid 29530486)
    • (1999) RNA , vol.5 , Issue.11 , pp. 1419-1429
    • Schmitz, U.1    Behrens, S.2    Freymann, D.M.3    Keenan, R.J.4    Lukavsky, P.5    Walter, P.6    James, T.L.7
  • 87
    • 0032984289 scopus 로고    scopus 로고
    • Structure of the most conserved internal loop in SRP RNA
    • DOI 10.1038/10683
    • Schmitz U., James T.L., Lukavsky P., Walter P. 1999b. Structure of the most conserved internal loop in SRP RNA. Nat Struct Biol 6: 634-638. (Pubitemid 29318951)
    • (1999) Nature Structural Biology , vol.6 , Issue.7 , pp. 634-638
    • Schmitz, U.1    James, T.L.2    Lukavsky, P.3    Walter, P.4
  • 88
    • 79952075900 scopus 로고    scopus 로고
    • Optical melting measurements of nucleic acid thermodynamics
    • Schroeder S.J., Turner D.H. 2009. Optical melting measurements of nucleic acid thermodynamics. Methods Enzymol 468: 371-387.
    • (2009) Methods Enzymol , vol.468 , pp. 371-387
    • Schroeder, S.J.1    Turner, D.H.2
  • 90
    • 79958201834 scopus 로고    scopus 로고
    • Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints
    • Seetin M.G., Mathews D.H. 2011. Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints. J Comput Chem 32: 2232-2244.
    • (2011) J Comput Chem , vol.32 , pp. 2232-2244
    • Seetin, M.G.1    Mathews, D.H.2
  • 91
    • 33749341539 scopus 로고    scopus 로고
    • The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50S ribosomal subunits
    • DOI 10.1021/bi0605787
    • Shankar N., Kennedy S.D., Chen G., Krugh T.R., Turner D.H. 2006. The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits. Biochemistry 45: 11776-11789. (Pubitemid 44497805)
    • (2006) Biochemistry , vol.45 , Issue.39 , pp. 11776-11789
    • Shankar, N.1    Kennedy, S.D.2    Chen, G.3    Krugh, T.R.4    Turner, D.H.5
  • 92
    • 35848966148 scopus 로고    scopus 로고
    • NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA
    • DOI 10.1021/bi700802s
    • Shankar N., Xia T., Kennedy S.D., Krugh T.R., Mathews D.H., Turner D.H. 2007. NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA. Biochemistry 46: 12665-12678. (Pubitemid 350060091)
    • (2007) Biochemistry , vol.46 , Issue.44 , pp. 12665-12678
    • Shankar, N.1    Xia, T.2    Kennedy, S.D.3    Krugh, T.R.4    Mathews, D.H.5    Turner, D.H.6
  • 93
    • 77951032586 scopus 로고    scopus 로고
    • Role of unsatisfied hydrogen bond acceptors in RNA energetics and specificity
    • Siegfried N.A., Kierzek R., Bevilacqua P.C. 2010. Role of unsatisfied hydrogen bond acceptors in RNA energetics and specificity. J Am Chem Soc 132: 5342-5344.
    • (2010) J Am Chem Soc , vol.132 , pp. 5342-5344
    • Siegfried, N.A.1    Kierzek, R.2    Bevilacqua, P.C.3
  • 94
    • 12044251259 scopus 로고
    • Solvent suppression with symmetrically-shifted pulses
    • Smallcombe S.H. 1993. Solvent suppression with symmetrically-shifted pulses. J Am Chem Soc 115: 4776-4785.
    • (1993) J Am Chem Soc , vol.115 , pp. 4776-4785
    • Smallcombe, S.H.1
  • 95
    • 0024284629 scopus 로고
    • Studies on the t-butyldimethylsilyl group as 2′-O-protection in oligoribonucleotide synthesis via the H-phosphonate approach
    • Stawinski J., Strömberg R., Thelin M., Westman E. 1988. Studies on the t-butyldimethylsilyl group as 2′-O-protection in oligoribonucleotide synthesis via the H-phosphonate approach. Nucleic Acids Res 16: 9285-9298.
    • (1988) Nucleic Acids Res , vol.16 , pp. 9285-9298
    • Stawinski, J.1    Strömberg, R.2    Thelin, M.3    Westman, E.4
  • 97
    • 33846103677 scopus 로고    scopus 로고
    • YUP: A molecular simulation program for coarse-grained and multiscaled models
    • Tan R.K.Z., Petrov A.S., Harvey S.C. 2006. YUP: A molecular simulation program for coarse-grained and multiscaled models. J Chem Theory Comput 2: 529-540.
    • (2006) J Chem Theory Comput , vol.2 , pp. 529-540
    • Tan, R.K.Z.1    Petrov, A.S.2    Harvey, S.C.3
  • 99
    • 0002635816 scopus 로고    scopus 로고
    • Conformational changes
    • ed. VA Bloomfield et al.. University Science Press, Sausalito, CA
    • Turner D.H. 2000. Conformational changes. In Nucleic acids: Structures, properties and functions (ed. VA Bloomfield et al.). University Science Press, Sausalito, CA.
    • (2000) Nucleic Acids: Structures, Properties and Functions
    • Turner, D.H.1
  • 100
    • 0023518718 scopus 로고
    • Automated chemical synthesis of long oligoribonucleotides using 2'-O-silylated ribonucleoside 3'-O-phosphoramidites on a controlled-pore glass support: Synthesis of a 43-nucleotide sequence similar to the 3'-half molecule of an Escherichia coli formylmethionine tRNA
    • DOI 10.1021/ja00259a037
    • Usman N., Ogilvie K.K., Jiang M.Y., Cedergren R.J. 1987. Automated chemical synthesis of long oligoribonucleotides using 2′-O-silylated ribonucleoside 3′-O-phosphoramidites on a controlled-pore glass support: Synthesis of a 43-nucleotide sequence similar to the 3′-half molecule of an Escherichia coli formylmethionine tRNA. J Am Chem Soc 109: 7845-7854. (Pubitemid 18011363)
    • (1987) Journal of the American Chemical Society , vol.109 , Issue.25 , pp. 7845-7854
    • Usman, N.1    Ogilvie, K.K.2    Jiang, M.-Y.3    Cedergren, R.J.4
  • 105
    • 0000321069 scopus 로고    scopus 로고
    • 1H chemical shift calculations for use in structure refinement
    • Wijmenga S.S., Kruithof M., Hilbers C.W. 1997. Analysis of (1)H chemical shifts in DNA: Assessment of the reliability of (1)H chemical shift calculations for use in structure refinement. J Biol NMR 10: 337-350. (Pubitemid 127505374)
    • (1997) Journal of Biomolecular NMR , vol.10 , Issue.4 , pp. 337-350
    • Wijmenga, S.S.1    Kruithof, M.2    Hilbers, C.W.3
  • 106
    • 34548518530 scopus 로고    scopus 로고
    • The 2 Å structure of helix 6 of the human signal recognition particle RNA
    • DOI 10.1016/S0969-2126(00)80024-6
    • Wild K., Weichenrieder O., Leonard G.A., Cusack S. 1999. The 2 A ̊ structure of helix 6 of the human signal recognition particle RNA. Structure 7: 1345-1352. (Pubitemid 29529875)
    • (1999) Structure , vol.7 , Issue.11 , pp. 1345-1352
    • Wild, K.1    Weichenrieder, O.2    Leonard, G.A.3    Cusack, S.4
  • 108
    • 0029744135 scopus 로고    scopus 로고
    • Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach
    • 2 by two-dimensional NMR and the iterative relaxation matrix approach. Biochemistry 35: 9677-9689.
    • (1996) Biochemistry , vol.35 , pp. 9677-9689
    • Wu, M.1    Turner, D.H.2
  • 109
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson - Crick base pairs
    • DOI 10.1021/bi9809425
    • Xia T., SantaLucia J. Jr, Burkard M.E., Kierzek R., Schroeder S.J., Jiao X., Cox C., Turner D.H. 1998. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37: 14719-14735. (Pubitemid 28487580)
    • (1998) Biochemistry , vol.37 , Issue.42 , pp. 14719-14735
    • Xia, T.1    SantaLucia Jr., J.2    Burkard, M.E.3    Kierzek, R.4    Schroeder, S.J.5    Jiao, X.6    Cox, C.7    Turner, D.H.8
  • 110
  • 111
    • 77955336463 scopus 로고    scopus 로고
    • RNA structure determination using SAXS data
    • Yang S., Parisien M., Major F., Roux B. 2010. RNA structure determination using SAXS data. J Phys Chem1 B 114: 10039-10048.
    • (2010) J Phys Chem1 B , vol.114 , pp. 10039-10048
    • Yang, S.1    Parisien, M.2    Major, F.3    Roux, B.4
  • 112
    • 77952368283 scopus 로고    scopus 로고
    • Reparameterization of RNA chi torsion parameters for the AMBER force field and comparison to NMR spectra for cytidine and uridine
    • Yildirim I., Stern H.A., Kennedy S.D., Tubbs J.D., Turner D.H. 2010. Reparameterization of RNA chi torsion parameters for the AMBER force field and comparison to NMR spectra for cytidine and uridine. J Chem Theory Comput 6: 1520-1531.
    • (2010) J Chem Theory Comput , vol.6 , pp. 1520-1531
    • Yildirim, I.1    Stern, H.A.2    Kennedy, S.D.3    Tubbs, J.D.4    Turner, D.H.5


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