-
1
-
-
0034636984
-
NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition
-
Amarasinghe G.K., De Guzman R.N., Turner R.B., Chancellor K.J., Wu Z.R., and Summers M.F. NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition. J. Mol. Biol. 301 (2000) 491-511
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 491-511
-
-
Amarasinghe, G.K.1
De Guzman, R.N.2
Turner, R.B.3
Chancellor, K.J.4
Wu, Z.R.5
Summers, M.F.6
-
2
-
-
0032766647
-
RanGTP-regulated interactions of CRM1 with nucleoporins and a shuttling DEAD-box helicase
-
Askjaer P., Bachi A., Wilm M., Bischoff F.R., Weels D.L., Ogniewski V., Ohno M., Niehrs C., Kjems J., Mattaj I.W., and Fornerod M. RanGTP-regulated interactions of CRM1 with nucleoporins and a shuttling DEAD-box helicase. Mol. Cell. Biol. 19 (1999) 6276-6285
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 6276-6285
-
-
Askjaer, P.1
Bachi, A.2
Wilm, M.3
Bischoff, F.R.4
Weels, D.L.5
Ogniewski, V.6
Ohno, M.7
Niehrs, C.8
Kjems, J.9
Mattaj, I.W.10
Fornerod, M.11
-
3
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
-
Ban N., Nissen P., Hansen J., Moore P.B., and Steitz T.A. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289 (2000) 905-920
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
4
-
-
0029784592
-
Alpha helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex
-
Battiste J.L., Mao H., Rao N.S., Tan R., Muhandiram D.R., Kay L.E., Frankel A.D., and Williamson J.R. Alpha helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex. Science 273 (1996) 1547-1551
-
(1996)
Science
, vol.273
, pp. 1547-1551
-
-
Battiste, J.L.1
Mao, H.2
Rao, N.S.3
Tan, R.4
Muhandiram, D.R.5
Kay, L.E.6
Frankel, A.D.7
Williamson, J.R.8
-
5
-
-
28344450939
-
Arginine-rich motifs present multiple interfaces for specific binding by RNA
-
Bayer T.S., Booth L.N., Knudsen S.M., and Ellington A.D. Arginine-rich motifs present multiple interfaces for specific binding by RNA. RNA 11 (2005) 1848-1857
-
(2005)
RNA
, vol.11
, pp. 1848-1857
-
-
Bayer, T.S.1
Booth, L.N.2
Knudsen, S.M.3
Ellington, A.D.4
-
6
-
-
0031567148
-
A dynamic in vivo view of the HIV-I Rev-RRE interaction
-
Charpentier B., Stutz F., and Rosbash M. A dynamic in vivo view of the HIV-I Rev-RRE interaction. J. Mol. Biol. 266 (1997) 950-962
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 950-962
-
-
Charpentier, B.1
Stutz, F.2
Rosbash, M.3
-
7
-
-
0025810027
-
Characterization of HIV-1 REV protein: binding stoichiometry and minimal RNA substrate
-
Cook K.S., Fisk G.J., Hauber J., Usman N., Daly T.J., and Rusche J.R. Characterization of HIV-1 REV protein: binding stoichiometry and minimal RNA substrate. Nucleic Acids Res. 19 (1991) 1577-1583
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 1577-1583
-
-
Cook, K.S.1
Fisk, G.J.2
Hauber, J.3
Usman, N.4
Daly, T.J.5
Rusche, J.R.6
-
8
-
-
0032581976
-
Retroviruses as model systems for the study of nuclear RNA export pathways
-
Cullen B.R. Retroviruses as model systems for the study of nuclear RNA export pathways. Virology 249 (1998) 203-210
-
(1998)
Virology
, vol.249
, pp. 203-210
-
-
Cullen, B.R.1
-
9
-
-
0042658190
-
Nuclear mRNA export: insights from virology
-
Cullen B.R. Nuclear mRNA export: insights from virology. Trends Biochem. Sci. 28 (2003) 419-424
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 419-424
-
-
Cullen, B.R.1
-
10
-
-
0029400480
-
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
-
Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., and Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6 (1995) 277-293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
11
-
-
39549100997
-
Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes
-
Edgcomb S.P., Aschrafi A., Kompfner E., Williamson J.R., Gerace L., and Hennig M. Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes. Protein Sci. 17 (2008) 420-430
-
(2008)
Protein Sci.
, vol.17
, pp. 420-430
-
-
Edgcomb, S.P.1
Aschrafi, A.2
Kompfner, E.3
Williamson, J.R.4
Gerace, L.5
Hennig, M.6
-
12
-
-
0030924190
-
CRM1 is an export receptor for leucine-rich nuclear export signals
-
Fornerod M., Ohno M., Yoshida M., and Mattaj I.W. CRM1 is an export receptor for leucine-rich nuclear export signals. Cell 90 (1997) 1051-1060
-
(1997)
Cell
, vol.90
, pp. 1051-1060
-
-
Fornerod, M.1
Ohno, M.2
Yoshida, M.3
Mattaj, I.W.4
-
13
-
-
27444442727
-
HIV-1 Rev oligomerization is not obligatory in the presence of an extra basic domain
-
Furnes C., Arnesen T., Askjaer P., Kjems J., and Szilvay A.M. HIV-1 Rev oligomerization is not obligatory in the presence of an extra basic domain. Retrovirology 2 (2005) 39
-
(2005)
Retrovirology
, vol.2
, pp. 39
-
-
Furnes, C.1
Arnesen, T.2
Askjaer, P.3
Kjems, J.4
Szilvay, A.M.5
-
14
-
-
52049116251
-
-
Goddard, T.D., and Kneller, D.G. (2007). SPARKY 3.112, University of California, San Francisco.
-
Goddard, T.D., and Kneller, D.G. (2007). SPARKY 3.112, University of California, San Francisco.
-
-
-
-
15
-
-
0037071839
-
Structure of the SRP19 RNA complex and implications for signal recognition particle assembly
-
Hainzl T., Huang S., and Sauer-Eriksson A.E. Structure of the SRP19 RNA complex and implications for signal recognition particle assembly. Nature 417 (2002) 767-771
-
(2002)
Nature
, vol.417
, pp. 767-771
-
-
Hainzl, T.1
Huang, S.2
Sauer-Eriksson, A.E.3
-
16
-
-
0141707094
-
Structural basis of a phototropin light switch
-
Harper S.M., Neil L.C., and Gardner K.H. Structural basis of a phototropin light switch. Science 301 (2003) 1541-1544
-
(2003)
Science
, vol.301
, pp. 1541-1544
-
-
Harper, S.M.1
Neil, L.C.2
Gardner, K.H.3
-
17
-
-
0001926296
-
Virus structure
-
Fields B.N. (Ed), Lippincott-Raven, Philadelphia
-
Harrison S.C., Skehel J.J., and Wiley D.C. Virus structure. In: Fields B.N. (Ed). Virology (1996), Lippincott-Raven, Philadelphia 59-99
-
(1996)
Virology
, pp. 59-99
-
-
Harrison, S.C.1
Skehel, J.J.2
Wiley, D.C.3
-
18
-
-
0025882673
-
Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich "bubble" located within the rev-responsive region of viral mRNAs
-
Heaphy S., Finch J.T., Gait M.J., Karn J., and Singh M. Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich "bubble" located within the rev-responsive region of viral mRNAs. Proc. Natl. Acad. Sci. USA 88 (1991) 7366-7370
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 7366-7370
-
-
Heaphy, S.1
Finch, J.T.2
Gait, M.J.3
Karn, J.4
Singh, M.5
-
19
-
-
0025149054
-
Mutational analysis of the human immunodeficiency virus type 1 Rev transactivator: essential residues near the amino terminus
-
Hope T.J., McDonald D., Huang X.J., Low J., and Parslow T.G. Mutational analysis of the human immunodeficiency virus type 1 Rev transactivator: essential residues near the amino terminus. J. Virol. 64 (1990) 5360-5366
-
(1990)
J. Virol.
, vol.64
, pp. 5360-5366
-
-
Hope, T.J.1
McDonald, D.2
Huang, X.J.3
Low, J.4
Parslow, T.G.5
-
20
-
-
0026089413
-
Minimal Rev-response element for Type 1 human immunodeficiency virus
-
Huang X., Hope T.J., Bond B.L., McDonald D., Grahl K., and Parslow T.G. Minimal Rev-response element for Type 1 human immunodeficiency virus. J. Virol. 65 (1991) 2131-2134
-
(1991)
J. Virol.
, vol.65
, pp. 2131-2134
-
-
Huang, X.1
Hope, T.J.2
Bond, B.L.3
McDonald, D.4
Grahl, K.5
Parslow, T.G.6
-
21
-
-
0027104999
-
Recognition of the high affinity binding site in rev-response element RNA by the human immunodeficiency virus type-1 rev protein
-
Iwai S., Pritchard C., Mann D.A., Karn J., and Gait M.J. Recognition of the high affinity binding site in rev-response element RNA by the human immunodeficiency virus type-1 rev protein. Nucleic Acids Res. 20 (1992) 6465-6472
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6465-6472
-
-
Iwai, S.1
Pritchard, C.2
Mann, D.A.3
Karn, J.4
Gait, M.J.5
-
22
-
-
0030272096
-
A structural model for the HIV-1 Rev-RRE complex deduced from altered-specificity rev variants isolated by a rapid genetic strategy
-
Jain C., and Belasco J.G. A structural model for the HIV-1 Rev-RRE complex deduced from altered-specificity rev variants isolated by a rapid genetic strategy. Cell 87 (1996) 115-125
-
(1996)
Cell
, vol.87
, pp. 115-125
-
-
Jain, C.1
Belasco, J.G.2
-
23
-
-
0035265946
-
Structural model for the cooperative assembly of HIV-1 Rev multimers on the RRE as deduced from analysis of assembly-defective mutants
-
Jain C., and Belasco J.G. Structural model for the cooperative assembly of HIV-1 Rev multimers on the RRE as deduced from analysis of assembly-defective mutants. Mol. Cell 7 (2001) 603-614
-
(2001)
Mol. Cell
, vol.7
, pp. 603-614
-
-
Jain, C.1
Belasco, J.G.2
-
24
-
-
0026034946
-
Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response element
-
Kjems J., Brown M., Chang D.D., and Sharp P.A. Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response element. Proc. Natl. Acad. Sci. USA 88 (1991) 683-687
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 683-687
-
-
Kjems, J.1
Brown, M.2
Chang, D.D.3
Sharp, P.A.4
-
25
-
-
0027283983
-
The basic domain of Rev from human immunodeficiency virus type 1 specifically blocks the entry of U4/U6.U5 small nuclear ribonucleoprotein in spliceosome assembly
-
Kjems J., and Sharp P.A. The basic domain of Rev from human immunodeficiency virus type 1 specifically blocks the entry of U4/U6.U5 small nuclear ribonucleoprotein in spliceosome assembly. J. Virol. 67 (1993) 4769-4776
-
(1993)
J. Virol.
, vol.67
, pp. 4769-4776
-
-
Kjems, J.1
Sharp, P.A.2
-
26
-
-
23644444928
-
A simple motif for protein recognition in DNA secondary structures
-
Landt S.G., Ramirez A., Daugherty M.D., and Frankel A.D. A simple motif for protein recognition in DNA secondary structures. J. Mol. Biol. 351 (2005) 982-994
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 982-994
-
-
Landt, S.G.1
Ramirez, A.2
Daugherty, M.D.3
Frankel, A.D.4
-
27
-
-
34249316905
-
RNA-binding proteins: modular design for efficient function
-
Lunde B.M., Moore C., and Varani G. RNA-binding proteins: modular design for efficient function. Nat. Rev. Mol. Cell Biol. 8 (2007) 479-490
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
28
-
-
0025818452
-
HIV-1 structural gene expression requires the binding of multiple Rev monomers to the viral RRE: implications for HIV-1 latency
-
Malim M.H., and Cullen B.R. HIV-1 structural gene expression requires the binding of multiple Rev monomers to the viral RRE: implications for HIV-1 latency. Cell 65 (1991) 241-248
-
(1991)
Cell
, vol.65
, pp. 241-248
-
-
Malim, M.H.1
Cullen, B.R.2
-
29
-
-
0024518918
-
The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA
-
Malim M.H., Hauber J., Le S.Y., Maizel J.V., and Cullen B.R. The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA. Nature 338 (1989) 254-257
-
(1989)
Nature
, vol.338
, pp. 254-257
-
-
Malim, M.H.1
Hauber, J.2
Le, S.Y.3
Maizel, J.V.4
Cullen, B.R.5
-
30
-
-
0028108364
-
A molecular rheostat: Co-operative rev binding to stem I of the Rev-response element modulates human immunodeficiency virus type-1 late gene expression
-
Mann D.A., Mikaelian I., Zemmel R.W., Green S.M., Lowe A.D., Kimura T., Singh M., Butler P.J., Gait M.J., and Karn J. A molecular rheostat: Co-operative rev binding to stem I of the Rev-response element modulates human immunodeficiency virus type-1 late gene expression. J. Mol. Biol. 241 (1994) 193-207
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 193-207
-
-
Mann, D.A.1
Mikaelian, I.2
Zemmel, R.W.3
Green, S.M.4
Lowe, A.D.5
Kimura, T.6
Singh, M.7
Butler, P.J.8
Gait, M.J.9
Karn, J.10
-
31
-
-
0037472782
-
Modulation of DNA-binding domains for sequence-specific DNA recognition
-
Marmorstein R., and Fitzgerald M.X. Modulation of DNA-binding domains for sequence-specific DNA recognition. Gene 304 (2003) 1-12
-
(2003)
Gene
, vol.304
, pp. 1-12
-
-
Marmorstein, R.1
Fitzgerald, M.X.2
-
32
-
-
0035120436
-
Exchange of the basic domain of human immunodeficiency virus type 1 Rev for a polyarginine stretch expands the RNA binding specificity, and a minimal arginine cluster is required for optimal RRE RNA binding affinity, nuclear accumulation, and trans-activation
-
Nam Y.S., Petrovic A., Jeong K.S., and Venkatesan S. Exchange of the basic domain of human immunodeficiency virus type 1 Rev for a polyarginine stretch expands the RNA binding specificity, and a minimal arginine cluster is required for optimal RRE RNA binding affinity, nuclear accumulation, and trans-activation. J. Virol. 75 (2001) 2957-2971
-
(2001)
J. Virol.
, vol.75
, pp. 2957-2971
-
-
Nam, Y.S.1
Petrovic, A.2
Jeong, K.S.3
Venkatesan, S.4
-
33
-
-
0041372953
-
Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein
-
Perez I., McAfee J.G., and Patton J.G. Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein. Biochemistry 36 (1997) 11881-11890
-
(1997)
Biochemistry
, vol.36
, pp. 11881-11890
-
-
Perez, I.1
McAfee, J.G.2
Patton, J.G.3
-
36
-
-
8644268780
-
A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly
-
Shen H., and Green M.R. A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly. Mol. Cell 16 (2004) 363-373
-
(2004)
Mol. Cell
, vol.16
, pp. 363-373
-
-
Shen, H.1
Green, M.R.2
-
38
-
-
0030738086
-
The effect of viral regulatory protein expression on gene delivery by human immunodeficiency virus type 1 vectors produced in stable packaging cell lines
-
Srinivasakumar N., Chazal N., Helga-Maria C., Prasad S., Hammarskjold M.L., and Rekosh D. The effect of viral regulatory protein expression on gene delivery by human immunodeficiency virus type 1 vectors produced in stable packaging cell lines. J. Virol. 71 (1997) 5841-5848
-
(1997)
J. Virol.
, vol.71
, pp. 5841-5848
-
-
Srinivasakumar, N.1
Chazal, N.2
Helga-Maria, C.3
Prasad, S.4
Hammarskjold, M.L.5
Rekosh, D.6
-
39
-
-
0032901069
-
Polyvalent Rev decoys act as artificial Rev-responsive elements
-
Symensma T.L., Baskerville S., Yan A., and Ellington A.D. Polyvalent Rev decoys act as artificial Rev-responsive elements. J. Virol. 73 (1999) 4341-4349
-
(1999)
J. Virol.
, vol.73
, pp. 4341-4349
-
-
Symensma, T.L.1
Baskerville, S.2
Yan, A.3
Ellington, A.D.4
-
40
-
-
0027251792
-
RNA recognition by an isolated alpha helix
-
Tan R., Chen L., Buettner J.A., Hudson D., and Frankel A.D. RNA recognition by an isolated alpha helix. Cell 73 (1993) 1031-1040
-
(1993)
Cell
, vol.73
, pp. 1031-1040
-
-
Tan, R.1
Chen, L.2
Buettner, J.A.3
Hudson, D.4
Frankel, A.D.5
-
41
-
-
0028596537
-
Costabilization of peptide and RNA structure in an HIV Rev peptide-RRE complex
-
Tan R., and Frankel A.D. Costabilization of peptide and RNA structure in an HIV Rev peptide-RRE complex. Biochemistry 33 (1994) 14579-14585
-
(1994)
Biochemistry
, vol.33
, pp. 14579-14585
-
-
Tan, R.1
Frankel, A.D.2
-
42
-
-
0026601935
-
Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type 1 Rev protein
-
Tiley L.S., Malim M.H., Tewary H.K., Stockley P.G., and Cullen B.R. Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type 1 Rev protein. Proc. Natl. Acad. Sci. USA 89 (1992) 758-762
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 758-762
-
-
Tiley, L.S.1
Malim, M.H.2
Tewary, H.K.3
Stockley, P.G.4
Cullen, B.R.5
-
43
-
-
0036129107
-
Probability-based protein secondary structure identification using combined NMR chemical-shift data
-
Wang Y., and Jardetzky O. Probability-based protein secondary structure identification using combined NMR chemical-shift data. Protein Sci. 11 (2002) 852-861
-
(2002)
Protein Sci.
, vol.11
, pp. 852-861
-
-
Wang, Y.1
Jardetzky, O.2
-
44
-
-
0029130168
-
Identification of a signal for rapid export of proteins from the nucleus
-
Wen W., Meinkoth J.L., Tsien R.Y., and Taylor S.S. Identification of a signal for rapid export of proteins from the nucleus. Cell 82 (1995) 463-473
-
(1995)
Cell
, vol.82
, pp. 463-473
-
-
Wen, W.1
Meinkoth, J.L.2
Tsien, R.Y.3
Taylor, S.S.4
-
45
-
-
0029847929
-
Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope
-
Xu W., and Ellington A.D. Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope. Proc. Natl. Acad. Sci. USA 93 (1996) 7475-7480
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7475-7480
-
-
Xu, W.1
Ellington, A.D.2
-
46
-
-
0033200399
-
RNA architecture dictates the conformations of a bound peptide
-
Ye X., Gorin A., Frederick R., Hu W., Majumdar A., Xu W., McLendon G., Ellington A., and Patel D.J. RNA architecture dictates the conformations of a bound peptide. Chem. Biol. 6 (1999) 657-669
-
(1999)
Chem. Biol.
, vol.6
, pp. 657-669
-
-
Ye, X.1
Gorin, A.2
Frederick, R.3
Hu, W.4
Majumdar, A.5
Xu, W.6
McLendon, G.7
Ellington, A.8
Patel, D.J.9
-
47
-
-
3042798454
-
Yeast telomerase RNA: a flexible scaffold for protein subunits
-
Zappulla D.C., and Cech T.R. Yeast telomerase RNA: a flexible scaffold for protein subunits. Proc. Natl. Acad. Sci. USA 101 (2004) 10024-10029
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10024-10029
-
-
Zappulla, D.C.1
Cech, T.R.2
-
48
-
-
0029933537
-
Flexible regions of RNA structure facilitate co-operative Rev assembly on the Rev-response element
-
Zemmel R.W., Kelley A.C., Karn J., and Butler P.J. Flexible regions of RNA structure facilitate co-operative Rev assembly on the Rev-response element. J. Mol. Biol. 258 (1996) 763-777
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 763-777
-
-
Zemmel, R.W.1
Kelley, A.C.2
Karn, J.3
Butler, P.J.4
|