Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics

Journal of the American Chemical Society

Volumn 131, Issue 7, 2009, Pages 2541-2546

  Gherghe, Costin M ^a   Leonard, Christopher W ^a   Ding, Feng ^b   Dokholyan, Nikolay V ^b   Weeks, Kevin M ^a  

^a University of North Carolina at Chapel Hill   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL INFORMATION; COARSE-GRAINED; COMPUTATIONAL ALGORITHM; COMPUTATIONAL APPROACH; FOLDING INTERMEDIATES; HELICAL MOTIFS; HIGH QUALITY; HIGHER ORDER; NEW APPROACHES; NUCLEOBASE; PSEUDOATOMS; RNA SECONDARY STRUCTURES; RNA STRUCTURES; RNA TERTIARY STRUCTURE; STRUCTURAL METHODS; TERTIARY STRUCTURES; USER INTERVENTION;

COMPUTATION THEORY; MOLECULAR DYNAMICS; RNA;

NUCLEIC ACIDS;

NUCLEIC ACID BASE; PHOSPHATE; RIBOSE; RNA; TRANSFER RNA; ASPARTIC ACID TRANSFER RNA; EDETIC ACID; FE(II)-EDTA; FE(III)-EDTA; FERRIC ION; FERROUS ION;

ALGORITHM; ARTICLE; MOLECULAR DYNAMICS; NONHUMAN; RNA ANALYSIS; RNA STRUCTURE; STRUCTURE ANALYSIS; YEAST; ANALOGS AND DERIVATIVES; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; EDETIC ACID; FERRIC COMPOUNDS; FERROUS COMPOUNDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA; RNA, TRANSFER, ASP;

EID: 67849127180     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja805460e     Document Type: Article

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