Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach

Biochemistry

Volumn 35, Issue 30, 1996, Pages 9677-9689

  Wu, Ming ^a   Turner, Douglas H ^a  

^a UNIVERSITY OF ROCHESTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY RNA; DOUBLE STRANDED DNA;

AMINO ACID SUBSTITUTION; ARTICLE; BASE PAIRING; HYDROGEN BOND; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS;

BASE SEQUENCE; HYDROGEN BONDING; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; OLIGORIBONUCLEOTIDES; RNA; SOLUTIONS;

EID: 0029744135     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi960133q     Document Type: Article

References (58)

1. Baeyens, K. J., DeBondt, H. L., & Holbrook, S. R. (1995) Nat. Struct. Biol. 2, 56-62.
2. Battiste, J. L., Tan, R., Frankel, A. D., & Williamson, J. R. (1994) Biochemistry 33, 2741-2747.
3. Been, M. D., & Perrotta, A. T. (1995) RNA 1, 1061-1070.
4. Biou, V., Yaremchuk, A., Tukalo, M., & Cusack, S. (1994) Science 263, 1404-1410.
5. Boelens, R., Koning, T. M. G., & Kaptein, R. (1988) J. Mol. Struct. 173, 229-311.
6. Cheng, J. W., Chou, S. H., & Reid, B. R. (1992) J. Mol. Biol. 228, 1037-1041.
7. Davies, D. B. (1978) Prog. NMR Spectrosc. 12, 135-225.
8. Dickerson, R. E. (1989) Nucleic Acids Res. 17, 1797-1803.
9. Dobson, C. M., Lian, L.-Y., Redfield, C., & Topping, K. D. (1986) J. Magn. Reson. 69, 201-209.
10. Ebel, S., Brown, T., & Lane, A. N. (1994) Eur. J. Biochem. 220, 703-715.
11. Friedman, R. A., & Honig, B. (1995) Biophys. J. 69, 1528-1535.
12. Gautheret, D., Konings, D., & Gutell, R. R. (1994) J. Mol. Biol. 242, 1-8.
13. Glück, A., Endo, Y., & Wool, I. G. (1994) Nucleic Acids Res. 22, 321-324.
14. Gorenstein, D. G., Meadows, R. P., Metz, J. T., Nikonowicz E., & Post, C. B. (1990) Adv. Biophys. Chem. 1, 47-124.
15. Greene, K. L., Jones, R. L., Li, Y., Robinson, H., Wang, A. H.-J., Zon, G., & Wilson, W. D. (1994) Biochemistry 33, 1053-1062.
16. Gutell, R. R., Schnare, M. N., & Gray, M. W. (1992) Nucleic Acids Res. 20 (Suppl.), 2095-2109.
17. Gutell, R. R., Gray, M. W., & Schnare, M. N. (1993) Nucleic Acids Res. 21, 3055-3074.
18. Hare, D. R., Wemmer, D. E., Chou, S. H., Drobny, G., & Reid, B. R. (1983) J. Mol. Biol. 171, 319-336.
19. Heus, H. A., & Pardi, A. (1991) Science 253, 191-194.
20. Hore, P. J. (1983) J. Magn. Reson. 55, 283-300.
21. Hosur, R. V., Govil, G., & Miles, H. J. (1988) Magn. Reson. Chem. 26, 927-944.
22. Hunter, C. A. (1993) J. Mol. Biol. 230, 1025-1054.
23. Lankhorst, P. P., Haasnoot, C. A. G., Erkelens, C., & Altona, C. J. (1984) J. Biomol. Struct. Dyn. 1, 1387-1405.
24. Leonard, G. A., McAuley-Hecht, K. E., Ebel, S., Lough, D. M., Brown, T., & Hunter, W. N. (1994) Structure 2, 483-494.
25. Li, Y., Zon, G., & Wilson, W. D. (1991a) Biochemistry 30, 7566-7572.
26. Li, Y., Zon, G., & Wilson, W. D. (1991b) Proc. Natl. Acad. Sci. U.S.A. 88, 26-30.
27. Li, Y., & Agrawal, S. (1995) Biochemistry 34, 10056-10062.
28. Michel, F., & Westhof, E. (1990) J. Mol. Biol. 216, 585-610.
29. Morse, S. E., & Draper, D. E. (1995) Nucleic Acids Res. 23, 302-306.
30. Murphy, F. L., & Cech, T. R. (1994) J. Mol. Biol. 236, 49-63.
31. Neuhaus, D., & Williamson, M. P. (1989) The Nuclear Overhauser Effect in Structural and Conformational Analysis, VCH Publishers, Inc., New York.
32. Nikonowicz, E. P., Meadows, R. P., Fagan, P., & Gorenstein, D. G. (1991) Biochemistry 30, 1323-1334.
33. Ogilvie, K. K., Theriault, N., & Sadana, K. L. (1977) J. Am. Chem. Soc. 99, 7741-7743.
34. Petersheim, M., & Turner, D. H. (1983) Biochemistry 22, 264-268.
35. Peterson, R. D., Bartel, D. P., Szostak, J. W., Horvath, S. J., & Feigon, J. (1994) Biochemistry 33, 5358-5365.
36. Pley, H. W., Flaherty, K. M., & McKay, D. B. (1994a) Nature (London) 372, 68-74.
37. Pley, H. W., Flaherty, K. M., & McKay, D. B. (1994b) Nature (London) 372, 111-113.
38. Ruffner, D. E., Stormo, G. D., & Uhlenbeck, O. C. (1990) Biochemistry 29, 10695-10702.
39. SantaLucia, J., Jr., Kierzek, R., & Turner, D. H. (1990) Biochemistry 29, 8813-8819.
40. SantaLucia, J., Jr., & Turner, D. H. (1993) Biochemistry 32, 12612-12623.
41. Scaringe, S. A., Franklyn, C., & Usman, N. (1990) Nucleic Acids Res. 18, 5433-5441.
42. Sklenar, V., & Feigon, J. (1990) Nature (London) 345, 836-838.
43. Sklenar, V., Miyashiro, H., Zon, G., Miles, H. T., & Bax, A. (1986) FEBS Lett. 208, 94-98.
44. Sklenar, V., Brooks, B. R., Zon, G., & Bax, A. (1987) FEBS Lett. 216, 249-252.
45. States, D. J., Haberkorn, R. A., & Ruben, D. J. (1982) J. Magn. Reson. 48, 286-292.
46. Szewczak, A. A., Moore, P. B., Chan, Y. L., & Wool, I. G. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 9581-9585.
47. Tinoco, I., Jr., Uhlenbeck, O. C., & Levine, M. D. (1971) Nature (London) 230, 363-367.
48. Turner, D. H., Sugimoto, N., & Freier, S. M. (1988) Annu. Rev. Biophys. Biophys. Chem. 17, 167-192.
49. Usman, N., Ogilvie, K. K., Jiang, M.-Y., & Cedergren, R. J. (1987) J. Am. Chem. Soc. 109, 7845-7854.
50. Varani, G., & Tinoco, I., Jr. (1991) Q. Rev. Biophys. 24, 479-532.
51. Walter, A. E., Turner, D. H., Kim, J., Lyttle, M. H., Muller, P., Mathews, D. H., & Zuker, M. (1994a) Proc. Natl. Acad. Sci. U.S.A. 91, 9218-9222.
52. Walter, A. E., Wu, M., & Turner, D. H. (1994b) Biochemistry 33, 11349-11354.
53. Weiner, S. J., Kollman, P. A., Nguyen, D. T., & Case, D. A. (1986) J. Comput. Chem. 7, 230-252.
54. Wimberly, B. (1994) Nat. Struct. Biol. 1, 820-827.
55. Wimberly, B., Varani, G., & Tinoco, I., Jr. (1993) Biochemistry 32, 1078-1087.
56. Wu, M., McDowell, J. A., & Turner, D. H. (1995) Biochemistry 34, 3204-3211.
57. Wuthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley Interscience, New York.
58. Zwieb, C. (1992) J. Biol. Chem. 267, 15650-15656.