Computational approaches to the interpretation of NMR data for studying protein dynamics

Chemical Physics

Volumn 396, Issue 1, 2012, Pages 124-134

  Markwick, Phineus R L ^a   Nilges, Michael ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CNRS   (France)

Author keywords

Molecular dynamics; Motional models; Relaxation

Indexed keywords

EID: 84859530115     PISSN: 03010104     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemphys.2011.11.023     Document Type: Article

References (194)

1. H. Fraenfelder, S.G. Sligar, and P.G. Wolynes Science 254 1991 1598
2. S.J. Benkovic, and S. Hammes-Schiffer Science 301 2003 1196
3. D.S. Wishart Curr. Pharm. Biotechnol. 6 2005 105
4. H.L. Liu, and J.P. Hsu Proteomics 5 2005 2056
5. A.S. Altieri, and R.A. Byrd Curr. Opin. Struct. Biol. 14 2004 547
6. V. Tugarinov, P.M. Huang, and L.E. Kay Annu. Rev. Biochem. 73 2004 107
7. W. Rieping, M. Habeck, and M. Nilges Science 309 2005 303
8. A.D. Mackerell Jr. J. Comput. Chem. 25 2004 1584
9. V. Hornak, R. Abel, A. Okur, B. Strockbine, A. Roitberg, and C. Simmerling Proteins Struct. Funct. Bioinform. 65 2006 712
10. S.A. Showalter, and R. Bruschweiler J. Am. Chem. Soc. 129 2007 4158
11. W. Xie, L. Song, D.G. Truhlar, and J. Gao J. Chem. Phys. 128 2008 234108
12. F. Paesani, W. Zhang, D.A. Case, T.E. Cheatham, and G.A. Voth J. Chem. Phys. 125 2006 184507
13. D.L. Ensign, P.M. Kasson, and V.S. Pande J. Mol. Biol. 374 2007 806
14. J.D. Chodera, N. Singhal, V.S. Pande, K.A. Dill, and W.C. Swope J. Chem. Phys. 126 2007 155101
15. D.E. Shaw, P. Maragakis, K. Lindorff-Larsen, S. Piana, R.O. Dror, M.P. Eastwood, J.A. Bank, J.M. Jumper, J.K. Salmon, Y. Shan, and W. Wriggers Science 330 2010 341
16. R. Elber Curr. Opin. Sruct. Biol. 15 2005 151
17. B.J. Berne, and J.E. Straub Curr. Opin. Struct. Biol. 7 1997 181
18. H. Gruebmuller Phys. Rev. E 52 1995 2893
19. G.M. Torrie, and J.P. Valleau J. Comput. Phys. 23 1977 187
20. X. Wu, and S. Wang J. Chem. Phys. 110 1999 9401
21. Y. Sugita, and Y. Okamoto Chem. Phys. Lett. 314 1999 141
22. A.F. Voter Phys. Rev. Lett. 78 1997 3908
23. J. Chem. Phys. 106 1997 4665
24. D. Hamelberg, J. Mongan, and J.A. McCammon J. Chem. Phys. 120 2004 11919
25. N. Metropolis, A.W. Rosenbluth, M.N. Rosenbluth, A.H. Teller, and E. Teller J. Chem. Phys. 21 1953 1087
26. S. Kumar, D. Bouzida, R.H. Swendsen, P.A. Kollman, and J.M. Rosenberg J. Comput. Chem. 13 1992 1011
27. J.D. Chodera, W.C. Swope, J.W. Pitera, C. Seok, and K.A. Dill J. Chem. Theory Comput. 3 2007 26
28. K. Lindorff-Larsen, R.B. Best, M.A. Depristo, C.M. Dobson, and M. Vendruscolo Nature 433 2005 128
29. A.E. Torda, R.M. Scheek, and W.F. Van Gunsteren Chem. Phys. Lett. 157 1989 289
30. J. Mol. Biol. 214 1990 223
31. P. Gros, W.F. Van Gunsteren, and W.G. Hol Science 249 1990 1149
32. D.A. Pearlman, and P.A. Kollman J. Mol. Biol. 220 1991 457
33. J. Kemmick, C.P.M. Van Mierlo, R.M. Scheek, and T.E. Creighton J. Mol. Biol. 230 1993 312
34. A.M.J.J. Bonvin, R. Boelens, and R. Kaptein J. Biomol. NMR 4 1994 143
35. A.M.J.J. Bonvin, and A.T. Brunger J. Mol. Biol. 250 1995 80
36. M.W.F. Fischer, A. Majumdar, and E.R.P. Zuiderweg Prog. Nucl. Mag. Res. Spectrosc. 33 1998 207
37. D.M. Korzhnev, M. Billeter, A.S. Arseniev, and V.Y. Orekhov Prog. Nucl. Mag. Res. Spectrosc. 38 2001 197
38. A.G. Palmer III Annu. Rev. Biophys. Biomol. Struct. 30 2001 129
39. R. Bruschweiler Curr. Opin. Struct. Biol. 13 2003 175
40. L.E. Kay, D.A. Torchia, and A. Bax Biochemistry 28 1989 8972
41. G. Lipari, and A. Szabo J. Am. Chem. Soc. 104 1982 4546 and 4559
42. G.M. Clore, A. Szabo, A. Bax, L.E. Kay, P.C. Driscoll, and A.M. Gronenborn J. Am. Chem. Soc. 112 1990 4989
43. G.M. Clore, P.C. Driscoll, P.T. Wingfield, and A.M. Gronenborn Biochemistry 29 1990 7387
44. D.E. Woessner J. Chem. Phys. 42 1965 1855
45. V.A. Daragan, and K.H. Mayo Prog. Nucl. Mag. Res. Spectrosc. 31 1997 63
46. S.L. Chang, and N. Tjandra J. Am. Chem. Soc. 123 2001 11484
47. Y. Pang, M. Buck, and E.R.P. Zuiderweg Biochemistry 41 2002 2655
48. T. Bremi, and R. Bruschweiler J. Am. Chem. Soc. 119 1997 6672
49. S.F. Lienin, T. Bremi, B. Brutscher, R. Bruschweiler, and R.R. Ernst J. Am. Chem. Soc. 120 1998 9870
50. M.W.F. Fischer, L. Zeng, Y. Pang, W. Hu, A. Majumdar, and E.R.P. Zuiderweg J. Am. Chem. Soc. 119 1997 12629
51. T. Carlomagno, M. Maurer, M. Hennig, and C. Griesinger J. Am. Chem. Soc. 122 2000 5105
52. T. Wang, S. Cai, and E.R.P. Zuiderweg J. Am. Chem. Soc. 125 2003 8639
53. F. Cisnetti, K. Loth, P. Pelupessy, and G. Bodenhausen ChemPhysChem. 5 2004 807
54. P.R.L. Markwick, and M. Sattler J. Am. Chem. Soc. 126 2004 11424
55. P.R.L. Markwick, R. Sprangers, and M. Sattler Angew. Chem. Int. Ed. 44 2005 3232
56. R. Ishima, J.M. Louis, and D.A. Torchia J. Mol. Biol. 305 2001 515
57. P.J. Finerty, D.R. Muhandiram, L.E. Kay, and J.D. Foreman-Kay J. Mol. Biol. 322 2002 605
58. O. Millet, D.R. Muhandiram, N.R. Skrynnikov, and L.E. Kay J. Am. Chem. Soc. 124 2002 6439
59. R. Paquin, F. Ferrage, F.A.A. Mulder, M. Akke, and G. Bodenhausen J. Am. Chem. Soc. 130 2008 15805
60. F. Zhang, and R. Bruschweiler J. Am. Chem. Soc. 124 2002 12654
61. D. Abergel, and G. Bodenhausen J. Chem. Phys. 123 2005 204901
62. R. Bruschweiler, and D.A. Case Phys. Rev. Lett. 72 1994 940
63. A. Kitao, and G. Wagner Proc. Natl. Acad. Sci. USA 97 2000 2064
64. J.J. Prompers, and R. Bruschweiler J. Am. Chem. Soc. 124 2002 4522
65. S. Genheden, C. Diehl, M. Akke, and U. Ryde J. Chem. Theory Comput. 6 2010 2176
66. S.A. Showalter, E. Johnson, M. Rance, and R. Bruschweiler J. Am. Chem. Soc. 129 2007 14146
67. P.R.L. Markwick, G. Bouvignies, and M. Blackledge J. Am. Chem. Soc. 129 2007 4724
68. P. Maragakis, K. Lindorff-Larsen, M.P. Eastwood, R.O. Dror, J.L. Klepeis, I.T. Arkin, M.O. Jensen, H. Xu, N. Trbovic, R.A. Friesner, A.G. Palmer III, and D.E. Shaw J. Phys. Chem. B 112 2008 6155
69. D.A. Case Acc. Chem. Res. 35 2002 325
70. R. Bruschweiler J. Am. Chem. Soc. 114 1992 5341
71. D. Fushman, N. Tjandra, and D. Cowburn J. Am. Chem. Soc. 120 1998 10947
72. C.D. Kroenke, M. Rance, and A.G. Palmer III J. Am. Chem. Soc. 121 1999 10119
73. C.D. Kroenke, J.P. Loria, L.K. Lee, M. Rance, and A.G. Palmer III J. Am. Chem. Soc. 120 1998 7905
74. N.H. Pawley, C. Wang, S. Koide, and L.K. Nicholson J. Biomol. NMR 20 2001 149
75. D. Fleming Hansen, D. Yang, H. Feng, Z. Zhou, S. Wiesner, Y. Bai, and L.E. Kay J. Am. Chem. Soc. 129 2007 11468
76. V. Tugarinov, Z. Liang, Y.E. Shapiro, J.H. Freed, and E. Meirovitch J. Am. Chem. Soc. 123 2001 3055
77. V. Wong, and D.A. Case J. Phys. Chem. B 112 2008 6013
78. W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey, and M.L. Klein J. Chem. Phys. 79 1983 926
79. H.W. Horn, W.C. Swope, J.W. Pitera, J.D. Madura, T.J. Dick, G.L. Hura, and T. Head-Gordon J. Chem. Phys. 120 2004 9665
80. H.J.C. Berendsen, J.R. Grigera, and T.P. Straatsma J. Phys. Chem. 91 1987 6269
81. G. La Penna, M. Mormino, F. Pioli, A. Perico, R. Fioravanti, J.M. Gruschus, and J.A. Ferretti Biopolymers 49 1999 235
82. G. La Penna, S. Fausti, A. Perico, and J.A. Ferritti Biopolymers 54 2000 89
83. V. Wong, D.A. Case, and A. Szabo Proc. Natl. Acad. Sci. USA 106 2009 11016
84. K.A. Henzler-Wildman, M. Lei, V. Thai, S.J. Kerns, M. Karplus, and D. Kern Nature 450 2007 913
85. N. Tjandra, and A. Bax Science 278 1997 1111
86. J.H. Prestegard, H.M. Al-Hashimi, and J.R. Tolman Quart. Rev. Biophys. 33 2000 371
87. J.R. Tolman, and K. Ruan Chem. Rev. 106 2006 1720
88. M. Blackledge Prog. Nucl. Mag. Res. Spectrosc. 46 2005 23
89. J.R. Tolman, J.M. Flanagan, M.A. Kennedy, and J.H. Prestegard Nat. Struct. Biol. 4 1997 292
90. D.T. Braddock, M. Cai, J.L. Barber, Y. Huang, and G.M. Clore J. Am. Chem. Soc. 123 2001 8634
91. M.W. Fischer, J.A. Losonczi, J.L. Weaver, and J.H. Prestegard Biochemistry 38 1999 9013
92. J. Meiler, J.J. Prompers, W. Peti, C. Griesinger, and R. Bruschweiler J. Am. Chem. Soc. 123 2001 6098
93. W. Peti, J. Meiler, R. Bruschweiler, and C. Griesinger J. Am. Chem. Soc. 124 2002 5822
94. N.A. Lakomek, T. Carlomagno, S. Becker, C. Griesinger, and J. Meiler J. Biomol. NMR 34 2006 101
95. N.A. Lakomek, K.F.A. Walter, C. Fares, O.F. Lange, and B.L. De Groot J. Biomol. NMR 41 2008 139
96. J.R. Tolman, H.M. Al-Hashimi, L.E. Kay, and J.H. Prestegard J. Am. Chem. Soc. 123 2001 1416
97. J.R. Tolman J. Am. Chem. Soc. 124 2002 12020
98. P. Bernado, and M. Blackledge J. Am. Chem. Soc. 126 2004 4907 and 7760
99. G. Bouvignies, P. Bernado, S. Meier, K. Cho, S. Grzesiek, R. Bruschweiler, and M. Blackledge Proc. Natl. Acad. Sci. USA 102 2005 13885
100. G. Bouvignies, P. Markwick, R. Bruschweiler, and M. Blackledge J. Am. Chem. Soc. 128 2006 15100
101. L. Salmon, G. Bouvignies, P. Markwick, N. Lakomek, S. Showalter, D.-W. Li, K. Walter, C. Griesinger, R. Bruschweiler, and M. Blackledge Angew. Chem. Int. Ed. 48 2009 4154
102. G.M. Clore, and C.D. Schwieters Biochemistry 43 2004 10678
103. B. Hess, and R.M. Scheek J. Mag. Reson. 164 2003 19
104. O.F. Lange, N.A. Lakomek, C. Fares, G.F. Schroeder, K.F.A. Walter, S. Becker, J. Meiler, H. Grubmueller, C. Griesinger, and B.L. de Groot Science 320 2008 1471
105. P.R.L. Markwick, G. Bouvignies, L. Salmon, J.A. McCammon, M. Nilges, and M. Blackledge J. Am. Chem. Soc. 131 2009 16968
106. G. Bouvignies, P.R.L. Markwick, and M. Blackledge ChemPhysChem. 8 2007 1901
107. I. Massova, and P.A. Kollman J. Am. Chem. Soc. 121 1999 8133
108. J.A. Losonczi, M. Andrec, M.W.F. Fischer, and J.H. Prestegard J. Mag. Reson. 138 1999 334
109. C.F. Cervantes, P.R.L. Markwick, S.-C. Sue, J.A. McCammon, H.J. Dyson, and E.A. Komives Biochemistry 48 2009 8023
110. M. Karplus J. Chem. Phys. 30 1959 11
111. R. Bruschweiler, and D.A. Case J. Am. Chem. Soc. 116 1994 11199
112. D.A. Case, C. Scheurer, and R. Bruschweiler J. Am. Chem. Soc. 122 2000 10390
113. P.R.L. Markwick, S.A. Showalter, G. Bouvignies, R. Bruschweiler, and M. Blackledge J. Biomol. NMR 45 2009 17
114. D.S. Wishart, and D.A. Case Methods Enzymol. 338 2001 3
115. C.A. Hunter, M.J. Packer, and C. Zonta Prog. Nucl. Mag. Reson. Spectrosc. 47 2005 27
116. M.V. Berjanskii, and D.S. Wishart J. Am. Chem. Soc. 127 2005 14970
117. K. Osapay, Y. Theriault, P.E. Wright, and D.A. Case J. Mol. Biol. 244 1994 183
118. A. Cavalli, X. Salvateela, C.M. Dobson, and M. Vendruscolo Proc. Natl. Acad. Sci. USA 104 2007 9615
119. Y. Shen, O.F. Lange, F. Delaglio, P. Rossi, J.M. Aramini, G. Liu, A. Eletsky, Y. Wu, K.K. Singarapu, A. Lemak, A. Ignatchenko, C.H. Arrowsmith, T. Szyperski, G.T. Montelione, D. Baker, and A. Bax Proc. Natl. Acad. Sci. USA 105 2008 4685
120. X.-P. Xu, and D.A. Case J. Biomol. NMR 21 2001 321
121. S. Neal, A.M. Nip, H. Zhang, and D.S. Wishart J. Biomol. NMR 26 2003 215
122. Y. Shen, and A. Bax J. Biomol. NMR 38 2007 289
123. D.A. Case, Curr. Opin. Struct. Biol. 8 (1998) 624; 10 (2000) 97.
124. D.-W. Li, and R. Bruschweiler J. Phys. Chem. Lett. 1 2010 246
125. P.R.L. Markwick, C.F. Cervantes, B.L. Abel, A.A. Komives, M. Blackledge, and J.A. McCammon J. Am. Chem. Soc. 132 2010 1220
126. D.-W. Li, and R. Bruschweiler Angew. Chem. Int. Ed. 49 2010 6778
127. M. Akke Curr. Opin. Struct. Biol. 12 2002 642
128. A.G. Palmer, C.D. Kroenke, and J.P. Loria Methods Enzymol. 339 2001 204
129. J.P. Loria, M. Rance, A.G. Palmer, J. Am. Chem. Soc. 121 (1999) 2331.
130. S. Mangia, N.J. Traaseth, G. Veglia, M. Garwood, and S. Michaeli J. Am. Chem. Soc. 132 2010 9979
131. K. Pervushin, R. Riek, G. Wider, and K. Wuethrich Proc. Natl. Acad. Sci. 94 1997 12366
132. M.J. Osborne, J. Schnell, S.J. Benkovic, H.J. Dyson, and P.E. Wright Biochemistry 40 2001 9846
133. R. Cole, and J.P. Loria Biochemistry 41 2002 6072
134. E.Z. Eisenmesser, D.A. Bosco, M. Akke, and D. Kern Science 295 2002 1520
135. V.A. Feher, and J. Cavanagh Nature 400 1999 289
136. F.A.A. Mulder, A. Mittmaier, B. Hon, F.W. Dahlquist, and L.E. Kay Nat. Struct. Biol. 8 2001 932
137. B.F. Volkman, D. Lipson, D.E. Wemmer, and D. Kern Science 291 2001 2429
138. R. Ishima, D.I. Freedberg, Y.-X. Wang, J.M. Louis, and D.A. Torchia Structure 7 1999 1047
139. D.M. Korzhnev, X. Salvatella, M. Vendruscolo, A.A. Di Nardo, A.R. Davidson, C.M. Dobson, and L.E. Kay Nature 430 2004 586
140. M. Vendruscolo, E. Paci, C.M. Dobson, and M. Karplus Nature 409 2001 641
141. N.R. Skrynnikov, F.W. Dahlquist, and L.E. Kay J. Am. Chem. Soc. 124 2002 12352
142. H. van Ingen, G.W. Vuister, S. Wijmenga, and M. Tessari J. Am. Chem. Soc. 128 2006 3856
143. R. Auer, P. Neudecker, D.R. Muhandiram, P. Lundstrom, D.F. Hansen, R. Konrat, and L.E. Kay J. Am. Chem. Soc. 131 2009 10832
144. D.M. Korzhnev, V.Y. Orekhov, and L.E. Kay J. Am. Chem. Soc. 127 2005 713
145. P. Vallurupalli, D.F. Hansen, E. Stollar, E. Meirovich, and L.E. Kay Proc. Natl. Acad. Soc. USA 194 2007 18473
146. P. Vallurupalli, D.F. Hansen, and L.E. Kay Proc. Natl. Acad. Sci. USA 105 2008 11766
147. D.M. Korzhnev, T.L. Religa, W. Banachewicz, A.R. Fersht, and L.E. Kay Science 329 2010 1312
148. J.R. Gillespie, D. Shortle, J. Mol. Biol, 268 (1997) 158.
149. A. Ramos, G. Varani, J. Am. Chem. Soc. 120 (1998) 10992
150. J. L. Battiste, G. Wagner, Biochemistry, 39 (2000) 5355
151. L.W. Donaldson, N.R. Skrynnikov, W-Y. Choy, D.R. Uhandiram, B. Sarkar, J.D. Foreman-Kay, L.E. Kay, J. Am. Chem. Soc. 123 (2001) 9843
152. V. Gaponenko, S.P. Sarma, A.S. Altieri, D.A. Horita, J.Li, R.A. Byrd, J. Biomol. NMR 28 (2004) 205
153. J. Iwahara, D.E. Anderson, E.C. Murphy, G.M. Clore, J. Am. Chem. Soc. 125 (2003) 6634.
154. P.G. Schmidt, and I.D. Kuntz Biochemistry 23 1984 4261
155. P.A. Kosen, R.M. Scheek, H. Naderi, V.J. Basus, S. Manogaran, P.G. Schmidt, N.J. Oppenheimer, and I.D. Kuntz Biochemistry 25 1986 2356
156. J. Iwahara, C.D. Schwieters, and G.M. Clore J. Am. Chem. Soc. 126 2004 5879
157. C. Tang, C.D. Schwieters, and G.M. Clore Nature 449 2007 1078
158. D. Bucher, B.J. Grant, P.R.L. Markwick, and J.A. McCammon PLOS Comput. Biol. 7 2011 e1002034
159. C. Tang, J. Iwahara, and G.M. Clore Nature 444 2006 383
160. Y.C. Kim, C. Tang, G.M. Clore, and G. Hummer Proc. Natl. Acad. Sci. USA 105 2008 12855
161. C.B. Arrington, and A.D. Robertson Methods Enzymol. 323 2000 104
162. Y. Bai, J.S. Milne, L. Mayne, and S.W. Englander Proteins 17 1993 75
163. A.R. Fersht, in: Structure and Mechanism in Protein Science, W.H. Freedman and Co., New York, 1999.
164. I. Bahar, A. Wallqvist, D.G. Covell, and R.L. Jernigan Biochemistry 37 1998 1067
165. A.E. Garcia, and G. Hummer Proteins 36 1999 175
166. D.W. Miller, and K.A. Dill Protein Sci. 4 1995 1860
167. M. Vendruscolo, E. Paci, C.M. Dobson, and M. Karplus J. Am. Chem. Soc. 125 2003 15686
168. R.B. Best, and M. Vendruscolo Structure 14 2006 97
169. H.J. Dyson, P.E. Wright, Methods Enzymol. 339 (2001), 258
170. Adv. Prot. Chem. 62 (2002) 311.
171. M. Vendruscolo Curr. Opin. Struct. Biol. 17 2007 15
172. H.J. Dyson, and P.E. Wright Nat. Rev. Mol. Cell. Biol. 6 2005 197
173. P. Bernado, L. Blanchard, P. Timmins, D. Marion, R.W.H. Ruigrok, and M. Blackledge Proc. Natl. Acad. Sci. USA 102 2005 17002
174. P. Bernado, C.W. Bertocini, C. Griesinger, M. Zweckstetter, and M. Blackledge J. Am. Chem. Soc. 127 2005 17968
175. M.D. Mukrash, P. Markwick, J. Biernat, M. von Bergen, P. Bernado, C. Griesinger, M. Zweckstetter, and M. Blackledge J. Am. Chem. Soc. 129 2007 5235
176. M. Wells, H. Tidow, T.J. Rutherford, P. Markwick, M.R. Jensen, E. Mylonas, D.I. Svergun, M. Blackledge, and A.R. Fersht Proc. Natl. Acad. Sci. USA 105 2008 5762
177. A.K. Jha, A. Colubri, K. Freed, and T. Sosnick Proc. Natl. Acad. Sci. 102 2005 13099
178. M. Louhivuori, K. Paakkonen, K. Fredriksson, P. Permi, J. Lounila, and A. Annila J. Am. Chem. Soc. 125 2003 15647
179. R. Mohana-Borges, N.K. Goto, G.J. Kroon, H.J. Dyson, and P.E. Wright J. Mol. Biol. 340 2004 1131
180. M. Louhivuori, K. Fredriksson, K. Paakkonen, P. Permi, and A. Annila J. Biomol. NMR 29 2004 517
181. J.A. Marsh, J.M.R. Baker, M. Tollinger, and J. Foreman-Kay J. Am. Chem. Soc. 130 2008 7804
182. J.R. Gillespie, and D.J. Shortle J. Mol. Biol. 268 1997 170
183. K. Lindorff-Larsen, S. Kristjansdottir, K. Teilum, W. Fieber, C.M. Dobson, F.M. Poulson, and M. Vendruscolo J. Am. Chem. Soc. 126 2004 3291
184. M.M. Dedmon, K. Lindorff-Larsen, J. Christodoulou, M. Vendruscolo, and C.M. Dobson J. Am. Chem. Soc. 127 2005 476
185. C.W. Bertocini, Y.-S. Jung, C.O. Fernandez, W. Hoyer, C. Griesinger, T.M. Jovin, and M. Zweckstetter Proc. Natl. Acad. Sci. USA 102 2005 1430
186. S. Kristjansdottir, K. Lindorff-Larsen, W. Fieber, C.M. Dobson, M. Vendruscolo, and F.M. Poulson J. Mol. Biol. 347 2005 1053
187. J. Song, L.-W. Guo, H. Muradov, N.O. Artemyev, A.E. Ruoho, and J.L. Markley Proc. Natl. Acad. Sci. USA 105 2008 1505
188. J.R. Allison, P. Varnai, C.M. Dobson, and M. Vendruscolo J. Am. Chem. Soc. 131 2009 18314
189. D. Ganguly, and J. Chen J. Mol. Biol. 390 2009 467
190. D.J. Felitsky, M.A. Lietzow, H.J. Dyson, and P.E. Wright Proc. Natl. Acad. Sci. USA 105 2008 6278
191. Y. Xue, I.S. Podkorytov, D.K. Rao, N. Benjamin, H. Sun, and N.R. Skrynnikov Protein Sci, 18 2009 1401
192. G. Fuentes, A.J. Nederveen, R. Kaptein, R. Boelens, and A.M.J.J. Bonvin J. Biomol. NMR 33 2005 175
193. M. Vendruscolo, E. Paci, M. Karplus, and C.M. Dobson Proc. Natl. Acad. Sci. 100 2003 14817
194. M.R. Jensen, L. Salmon, G. Nodet, and M. Blackledge J. Am. Chem. Soc. 132 2010 1270