메뉴 건너뛰기




Volumn 268, Issue 1, 1997, Pages 170-184

Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures

Author keywords

Folding intermediates; Hydrophobic interactions; Protein folding; Spin labeling

Indexed keywords

AMIDE; NUCLEASE;

EID: 0031585992     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.0953     Document Type: Article
Times cited : (266)

References (25)
  • 1
    • 0027988297 scopus 로고
    • Backbone dynamics of a highly disordered 131-residue fragment of staphylococcal nuclease
    • Alexandrescu A. T., Shortle D. Backbone dynamics of a highly disordered 131-residue fragment of staphylococcal nuclease. J. Mol. Biol. 242:1994;527-546.
    • (1994) J. Mol. Biol. , vol.242 , pp. 527-546
    • Alexandrescu, A.T.1    Shortle, D.2
  • 2
    • 0028274250 scopus 로고
    • Structure and dynamics of a denatured 131-residue fragment of staphylococcal nuclease, a heteronuclear NMR study
    • Alexandrescu A. T., Abeygunawardana C., Shortle D. Structure and dynamics of a denatured 131-residue fragment of staphylococcal nuclease, a heteronuclear NMR study. Biochemistry. 33:1994;1063-1072.
    • (1994) Biochemistry , vol.33 , pp. 1063-1072
    • Alexandrescu, A.T.1    Abeygunawardana, C.2    Shortle, D.3
  • 6
    • 0028466243 scopus 로고
    • Solid evidence for molten globules
    • Dobson C. M. Solid evidence for molten globules. Curr. Opin. Struct. Biol. 4:1994;636-640.
    • (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 636-640
    • Dobson, C.M.1
  • 7
    • 0015243672 scopus 로고
    • Folding of staphylococcal nuclease: Kinetic studies of two processes in acid renaturation
    • Epstein H. F., Schecter A. N., Chen R. F., Anfinsen C. B. Folding of staphylococcal nuclease: kinetic studies of two processes in acid renaturation. J. Mol. Biol. 60:1971;499-508.
    • (1971) J. Mol. Biol. , vol.60 , pp. 499-508
    • Epstein, H.F.1    Schecter, A.N.2    Chen, R.F.3    Anfinsen, C.B.4
  • 8
    • 0030066904 scopus 로고    scopus 로고
    • Mapping the structure of a non-native state of staphylococcal nuclease
    • Ermacora M. R., Ledman D. W., Fox R. O. Mapping the structure of a non-native state of staphylococcal nuclease. Nature Struct. Biol. 3:1996;59-66.
    • (1996) Nature Struct. Biol. , vol.3 , pp. 59-66
    • ErMacOra, M.R.1    Ledman, D.W.2    Fox, R.O.3
  • 9
    • 0031585990 scopus 로고    scopus 로고
    • Characterization of long range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels
    • Gillespie J. R., Shortle D. Characterization of long range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels. J. Mol. Biol. 268:1997;158-169.
    • (1997) J. Mol. Biol. , vol.268 , pp. 158-169
    • Gillespie, J.R.1    Shortle, D.2
  • 10
    • 0039573448 scopus 로고
    • Spin-label-induced nuclear magnetic resonance relation studies of enzymes
    • New York: Academic Press
    • Krugh T. R. Spin-label-induced nuclear magnetic resonance relation studies of enzymes. Spin Labeling II: Theory and Applications. 1979;Academic Press, New York.
    • (1979) Spin Labeling II: Theory and Applications
    • Krugh, T.R.1
  • 11
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the steroechemical quality of protein structures
    • Laskowski R. A., MacArthur M. W., Moss D. S., Thornton J. M. PROCHECK: a program to check the steroechemical quality of protein structures. J. Appl. Crystallog. 26:1993;283-291.
    • (1993) J. Appl. Crystallog. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 12
    • 0015222647 scopus 로고
    • The interpretation of protein structure: Estimation of static accessibility
    • Lee B. K., Richards F. M. The interpretation of protein structure: estimation of static accessibility. J. Mol. Biol. 55:1971;379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.K.1    Richards, F.M.2
  • 13
    • 0024288388 scopus 로고
    • Protein dynamics and distance determination by NOE measurements
    • LeMaster D. M., Kay L. E., Brunger A. T., Prestegard J. H. Protein dynamics and distance determination by NOE measurements. FEBS Letters. 236:1988;71-76.
    • (1988) FEBS Letters , vol.236 , pp. 71-76
    • Lemaster, D.M.1    Kay, L.E.2    Brunger, A.T.3    Prestegard, J.H.4
  • 16
    • 0030961391 scopus 로고    scopus 로고
    • Measurement of water-amide proton exchange rates in the denatured state of staphylococcal nuclease by a magnetization transfer technique
    • Mori S., van Zijl P. C. M., Shortle D. Measurement of water-amide proton exchange rates in the denatured state of staphylococcal nuclease by a magnetization transfer technique. Proteins: Struct. Funct. Genet. 1997.
    • (1997) Proteins: Struct. Funct. Genet.
    • Mori, S.1    Van Zijl, P.C.M.2    Shortle, D.3
  • 17
    • 0024285896 scopus 로고
    • Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations
    • Nilges M., Clore G. M., Gronenborn A. M. Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations. FEBS Letters. 229:1988;317-324.
    • (1988) FEBS Letters , vol.229 , pp. 317-324
    • Nilges, M.1    Clore, G.M.2    Gronenborn, A.M.3
  • 18
    • 0026203784 scopus 로고
    • Effects of limited input distance constraints upon the distance geometry algorithm
    • Oshiro C. M., Thomason J., Kuntz I. D. Effects of limited input distance constraints upon the distance geometry algorithm. Biopolymers. 31:1991;1049-1064.
    • (1991) Biopolymers , vol.31 , pp. 1049-1064
    • Oshiro, C.M.1    Thomason, J.2    Kuntz, I.D.3
  • 19
    • 0003572889 scopus 로고
    • Published electronically on the World Wide Web. (ftp://ftp.dcs.ed.ac,uk/pub/rasmol)
    • Sayle R. RasMol V2.6, Molecular visualization program. 1995;Published electronically on the World Wide Web. (ftp://ftp.dcs.ed.ac,uk/pub/rasmol).
    • (1995) RasMol V2.6, Molecular Visualization Program
    • Sayle, R.1
  • 20
    • 0021772469 scopus 로고
    • Distance measurements in spin-labeled lysozyme
    • Schmidt P. G., Kuntz I. D. Distance measurements in spin-labeled lysozyme. Biochemistry. 23:1984;4261-4266.
    • (1984) Biochemistry , vol.23 , pp. 4261-4266
    • Schmidt, P.G.1    Kuntz, I.D.2
  • 21
    • 0030032461 scopus 로고    scopus 로고
    • The denatured state (the other half of the folding equation) and its role in protein stability
    • Shortle D. The denatured state (the other half of the folding equation) and its role in protein stability. FASEB J. 10:1996a;27-34.
    • (1996) FASEB J. , vol.10 , pp. 27-34
    • Shortle, D.1
  • 22
    • 0029900442 scopus 로고    scopus 로고
    • Protein folding for realists, a timeless phenomenon
    • Shortle D., Wang Yi, Gillespie J., Wrabl J. O. Protein folding for realists, a timeless phenomenon. Protein Sci. 5:1996;991-1000.
    • (1996) Protein Sci. , vol.5 , pp. 991-1000
    • Shortle, D.1    Wang Yi2    Gillespie, J.3    Wrabl, J.O.4
  • 23
    • 0028856228 scopus 로고
    • The equilibrium folding pathway of staphylococcal nuclease, Identification of the most stable chain-chain interactions by NMR and CD spectroscopy
    • Wang Y., Shortle D. The equilibrium folding pathway of staphylococcal nuclease, Identification of the most stable chain-chain interactions by NMR and CD spectroscopy. Biochemistry. 34:1995;15895-15905.
    • (1995) Biochemistry , vol.34 , pp. 15895-15905
    • Wang, Y.1    Shortle, D.2
  • 24
    • 0029786948 scopus 로고    scopus 로고
    • A dynamic bundle of four adjacent hydrophobic segments in the denatured state of staphylococcal nuclease
    • Wang Y., Shortle D. A dynamic bundle of four adjacent hydrophobic segments in the denatured state of staphylococcal nuclease. Protein Sci. 5:1996;1898-1906.
    • (1996) Protein Sci. , vol.5 , pp. 1898-1906
    • Wang, Y.1    Shortle, D.2
  • 25
    • 0031064317 scopus 로고    scopus 로고
    • Triple-resonance NOESY-based experiments with improved spectral resolution: Applications to structural characterization of unfolded, partially folded, and folded proteins
    • Zhang O., Forman-Kay J. D., Shortle D., Kay L. E. Triple-resonance NOESY-based experiments with improved spectral resolution: applications to structural characterization of unfolded, partially folded, and folded proteins. J. Mol. Biol. 1997.
    • (1997) J. Mol. Biol.
    • Zhang, O.1    Forman-Kay, J.D.2    Shortle, D.3    Kay, L.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.